F261016

General Info

Members Datasets Scaffolds Average Seq Length
172 123 344 289

Family's Representative Sequence

Representative Sequence 3300031824|Ga0307413_10084410|Ga0307413_100844103
Length 333
Sequence VGRRAARPGAPLTVRHGCAVHVSGGRPRDEGTPIGMWVRILGSAAGGGFPQWNCACPSCRAVRDGSRPARARTQSSVAVSPDRRRWFLLNASPDVHAQLAAFPALHPADGSRSVPLEAVLLTDAELDHTLGLLLLREARGLVIHATEATHDTLYQGTGLLRTLDAYCPVTWRPVVLGVDVPLGGGLSYRAFDVPTTKRARFGTGEEKGRVVGYRLTDERSGRALVCLPAVQELTAGVCEQLDGCACLLVDGTCWDDDELIRLGMGTRTAREMGHLPIGGPGGSLEQLARLDVERTVYVHVNNTNPILLEDAAERRLVEQHGMEVAVDGLELRI

Samples

Sample ID Description Type Environment
1 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
2 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
3 3300003373 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
4 3300003577 Grassland soil microbial communities from Hopland, California, USA - Sample H2_Rhizo_32 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
5 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
8 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
9 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
10 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
11 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
12 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
13 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
14 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
15 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
16 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
17 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
18 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
19 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
20 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
21 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
22 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
23 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
24 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
25 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
26 3300020077 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
27 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
28 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
29 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
30 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
31 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
42 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
43 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
44 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
45 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
46 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
47 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
48 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
49 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
50 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
51 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
52 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
53 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
54 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
55 3300036459 Metatranscriptome of spruce roots microbial communities from Maridalen valley, Oslo, Norway - NRE5 (Metagenome Metatranscriptome) Metatranscriptome Unclassified
56 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
57 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
58 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
59 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
60 3300042124 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627W_E14_082716_2423 Metagenome Rhizosphere
61 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
62 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
63 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
64 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
65 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
66 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
67 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
68 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
69 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
70 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
71 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
72 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
73 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
74 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
75 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
76 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
77 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
78 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
79 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
80 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
81 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
82 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
83 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
84 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
85 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
86 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
87 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
88 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
89 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
90 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
95 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
98 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
99 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
100 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
101 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
102 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
103 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
104 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
105 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
106 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
107 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
110 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
111 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
112 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
113 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
114 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
115 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
116 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
117 3300059421 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 6_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
118 3300059426 Rhizosphere soil microbial communities from sorghum plant in University of Arizona Maricopa Agricultural Center, AZ, USA - 11_0-15_MAC_RHIZO_20210810 Metagenome Rhizosphere
119 3300059646 Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 42R_SW_T1_R3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
120 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
121 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
122 2622736605 Geodermatophilus ruber DSM 45317 Isolate Rhizosphere
123 2870782633 Pseudonocardia eucalypti DSM 45351 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 93.02
Metatranscriptomes 5.81
Isolates 1.16

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.16
Nodule 0
Rhizoplane 4.07
Rhizosphere 88.37
Stem 0
Stem Tuber 0
Unclassified 0.58

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0307413_10084410 3300031824 Bacteria 2047
2 JGI25406J46586_10001748 3300003203 Bacteria 10218
3 JGI25407J50210_10000469 3300003373 Bacteria 7956
4 Ga0007416J51690_1011229 3300003577 Bacteria 2199
5 Ga0070658_10094498 3300005327 Bacteria 2467
6 Ga0070680_100158861 3300005336 Bacteria 1899
7 Ga0070714_100037175 3300005435 Bacteria 4090
8 Ga0070714_100248051 3300005435 Bacteria 1645
9 Ga0070714_100483065 3300005435 Bacteria 1180
10 Ga0070713_100095632 3300005436 Bacteria 2563
11 Ga0070713_100239036 3300005436 Bacteria 1653
12 Ga0070681_10098484 3300005458 Bacteria 2870
13 Ga0070679_100028649 3300005530 Bacteria 5492
14 Ga0068861_100030631 3300005719 Bacteria 3945
15 Ga0081455_10001544 3300005937 Bacteria 28365
16 Ga0081538_10001212 3300005981 Bacteria 27078
17 Ga0081539_10000834 3300005985 Bacteria 59270
18 Ga0070716_100098257 3300006173 Bacteria 1788
19 Ga0075434_100249563 3300006871 Bacteria 1794
20 Ga0111539_10078774 3300009094 Bacteria 3876
21 Ga0105245_10254259 3300009098 Bacteria 1708
22 Ga0105241_10047505 3300009174 Bacteria 3264
23 Ga0105249_10187919 3300009553 Bacteria 2014
24 Ga0163163_10183619 3300014325 Bacteria 2139
25 Ga0163163_10520761 3300014325 Bacteria 1251
26 Ga0163163_10818596 3300014325 Bacteria 995
27 Ga0157380_10147108 3300014326 Unclassified 2032
28 Ga0157379_10289242 3300014968 Bacteria 1492
29 Ga0163161_10054187 3300017792 Bacteria 2910
30 Ga0197907_11201908 3300020069 Bacteria 2012
31 Ga0197907_11410531 3300020069 Bacteria 1621
32 Ga0206351_10531023 3300020077 Bacteria 1344
33 Ga0206351_10568519 3300020077 Bacteria 1362
34 Ga0206350_10388726 3300020080 Bacteria 2526
35 Ga0206354_10424194 3300020081 Bacteria 3828
36 Ga0213875_10000225 3300021388 Bacteria 57756
37 Ga0213875_10001346 3300021388 Bacteria 16188
38 Ga0213875_10060532 3300021388 Bacteria 1771
39 Ga0224712_10022983 3300022467 Bacteria 2158
40 Ga0207647_10047837 3300025904 Bacteria 2658
41 Ga0207705_10120623 3300025909 Bacteria 1945
42 Ga0207654_10277889 3300025911 Bacteria 1132
43 Ga0207693_10042636 3300025915 Bacteria 3572
44 Ga0207663_10140785 3300025916 Bacteria 1680
45 Ga0207660_10057976 3300025917 Bacteria 2775
46 Ga0207652_10004965 3300025921 Bacteria 10772
47 Ga0207700_10011239 3300025928 Bacteria 5699
48 Ga0207700_10354823 3300025928 Bacteria 1277
49 Ga0207700_10472705 3300025928 Bacteria 1107
50 Ga0207664_10029439 3300025929 Bacteria 4182
51 Ga0207664_10475442 3300025929 Bacteria 1117
52 Ga0207665_10002140 3300025939 Bacteria 13357
53 Ga0307413_10036437 3300031824 Bacteria 2831
54 Ga0307413_10045017 3300031824 Bacteria 2612
55 Ga0307413_10082612 3300031824 Bacteria 2064
56 Ga0307410_10032086 3300031852 Bacteria 3376
57 Ga0307410_10094203 3300031852 Bacteria 2132
58 Ga0307406_10026069 3300031901 Bacteria 3506
59 Ga0307406_10090946 3300031901 Bacteria 2055
60 Ga0307407_10035410 3300031903 Bacteria 2742
61 Ga0307412_10182825 3300031911 Bacteria 1578
62 Ga0307412_10445418 3300031911 Bacteria 1065
63 Ga0307409_100021941 3300031995 Bacteria 4391
64 Ga0307416_100187179 3300032002 Bacteria 1948
65 Ga0307416_100510346 3300032002 Bacteria 1268
66 Ga0307414_10048158 3300032004 Bacteria 2939
67 Ga0307414_10210392 3300032004 Bacteria 1589
68 Ga0307414_10416741 3300032004 Bacteria 1170
69 Ga0307411_10024262 3300032005 Bacteria 3611
70 Ga0307415_100043077 3300032126 Bacteria 3009
71 Ga0307415_100145417 3300032126 Bacteria 1816
72 Ga0307415_100586609 3300032126 Bacteria 989
73 Ga0373936_0008285 3300035113 Bacteria 3908
74 Ga0373946_0000452 3300035171 Bacteria 13505
75 Ga0373935_0023280 3300035692 Bacteria 3805
76 Ga0373927_0144876 3300035695 Bacteria 1554
77 Ga0373947_0139382 3300035725 Bacteria 1554
78 Ga0372808_009887 3300036459 Bacteria 1336
79 Ga0395900_0038166 3300037418 Bacteria 4952
80 Ga0395900_0067460 3300037418 Bacteria 3675
81 Ga0395898_0029492 3300037466 Bacteria 5495
82 Ga0395898_0143556 3300037466 Bacteria 2285
83 Ga0436364_0420889 3300037853 Bacteria 36146
84 Ga0436364_0455306 3300037853 Bacteria 18481
85 Ga0436364_0691136 3300037853 Bacteria 1097
86 Ga0395901_0018649 3300038443 Bacteria 7086
87 Ga0395901_0777288 3300038443 Bacteria 948
88 Ga0450922_002019 3300042124 Bacteria 1936
89 Ga0439460_0056970 3300042461 Bacteria 1185
90 Ga0466965_0060571 3300044683 Bacteria 1891
91 Ga0466963_0063602 3300044694 Bacteria 2470
92 Ga0466963_0178511 3300044694 Bacteria 1482
93 Ga0466960_0189100 3300044901 Bacteria 1120
94 Ga0466959_0366092 3300045049 Bacteria 982
95 Ga0466967_0000787 3300045976 Bacteria 16532
96 Ga0495641_0006750 3300046461 Bacteria 7365
97 Ga0495653_0028476 3300046463 Bacteria 4466
98 Ga0495650_0020225 3300046471 Bacteria 3251
99 Ga0495582_0035481 3300046473 Bacteria 2743
100 Ga0495664_0000449 3300046477 Bacteria 20198
101 Ga0495652_0053748 3300046529 Bacteria 3432
102 Ga0495597_0000964 3300046542 Bacteria 22215
103 Ga0495635_0023681 3300046663 Bacteria 4277
104 Ga0495657_0056031 3300046675 Bacteria 2627
105 Ga0495646_0092696 3300046680 Bacteria 1742
106 Ga0495604_0246469 3300047317 Bacteria 1220
107 Ga0495676_0005502 3300047321 Bacteria 11617
108 Ga0495684_0002060 3300047471 Bacteria 16163
109 Ga0496102_0004666 3300048905 Bacteria 11593
110 Ga0496103_0151139 3300048906 Bacteria 1487
111 Ga0496106_0314641 3300048909 Bacteria 1256
112 Ga0496109_0201005 3300048912 Bacteria 1873
113 Ga0496110_0030458 3300048913 Bacteria 4652
114 Ga0496113_0345226 3300048916 Bacteria 1194
115 Ga0496115_0175157 3300048918 Bacteria 1774
116 Ga0496126_0026567 3300048929 Bacteria 5548
117 Ga0496126_0102479 3300048929 Bacteria 2502
118 Ga0496126_0294028 3300048929 Bacteria 1342
119 Ga0501033_0091291 3300049570 Bacteria 2228
120 Ga0501036_0059089 3300049572 Bacteria 3249
121 Ga0501039_0051677 3300049575 Bacteria 3180
122 Ga0501040_0012350 3300049576 Bacteria 5596
123 Ga0501040_0072239 3300049576 Bacteria 2383
124 Ga0501041_0028387 3300049577 Bacteria 3375
125 Ga0501041_0073659 3300049577 Bacteria 2098
126 Ga0501042_0032856 3300049578 Bacteria 3676
127 Ga0501042_0057039 3300049578 Bacteria 2787
128 Ga0501042_0224471 3300049578 Bacteria 1355
129 Ga0501043_0104399 3300049579 Bacteria 2227
130 Ga0501046_0033864 3300049580 Bacteria 4126
131 Ga0501048_0093494 3300049582 Bacteria 2121
132 Ga0501048_0130411 3300049582 Bacteria 1777
133 Ga0501071_0013047 3300049587 Bacteria 5654
134 Ga0501072_0112509 3300049588 Bacteria 2167
135 Ga0501074_0102177 3300049590 Bacteria 2052
136 Ga0501075_0049613 3300049591 Bacteria 3155
137 Ga0501075_0087661 3300049591 Bacteria 2359
138 Ga0501076_0003572 3300049592 Bacteria 10922
139 Ga0501076_0019754 3300049592 Bacteria 5153
140 Ga0501077_0003507 3300049593 Bacteria 9414
141 Ga0501077_0003834 3300049593 Bacteria 9057
142 Ga0501077_0041542 3300049593 Bacteria 2927
143 Ga0501079_0228662 3300049741 Bacteria 1453
144 Ga0501080_0014985 3300049742 Bacteria 7139
145 Ga0501080_0265547 3300049742 Bacteria 1563
146 Ga0501081_0017588 3300049743 Bacteria 4736
147 Ga0501081_0028164 3300049743 Bacteria 3790
148 Ga0501081_0098274 3300049743 Bacteria 2067
149 Ga0501083_0040759 3300049744 Bacteria 3152
150 Ga0501035_0166362 3300049822 Bacteria 1907
151 Ga0501044_0434337 3300049823 Bacteria 1222
152 Ga0501045_0086524 3300049824 Bacteria 2313
153 nmdc:mga05p37_269025_c1 3300050507 Bacteria 2037
154 nmdc:mga05p37_486770_c1 3300050507 Bacteria 1419
155 nmdc:mga08y16_97084_c1 3300050511 Bacteria 3068
156 nmdc:mga08x19_147208_c1 3300050514 Bacteria 1593
157 Ga0495601_0102245 3300053077 Bacteria 1852
158 Ga0500559_0007497 3300053136 Bacteria 4826
159 Ga0500588_0028011 3300053146 Bacteria 1593
160 Ga0501084_0008409 3300054114 Bacteria 8527
161 Ga0501084_0093447 3300054114 Bacteria 2525
162 Ga0501084_0344367 3300054114 Bacteria 1259
163 Ga0590071_004337 3300059421 Bacteria 3450
164 Ga0590077_029582 3300059426 Bacteria 1192
165 Ga0587078_002919 3300059646 Bacteria 1689
166 Ga0501082_0029948 3300060353 Bacteria 4690
167 Ga0501082_0032870 3300060353 Bacteria 4474
168 Ga0501082_0371505 3300060353 Bacteria 1247
169 Ga0530510_0112686 3300061734 Bacteria 1993
170 Ga0530510_0285644 3300061734 Bacteria 1233
171 2623501376 2622736605 Bacteria 4992138
172 2870784539 2870782633 Bacteria 9624083
173 Ga0307413_10084410
174 JGI25406J46586_10001748
175 JGI25407J50210_10000469
176 Ga0007416J51690_1011229
177 Ga0070658_10094498
178 Ga0070680_100158861
179 Ga0070714_100037175
180 Ga0070714_100248051
181 Ga0070714_100483065
182 Ga0070713_100095632
183 Ga0070713_100239036
184 Ga0070681_10098484
185 Ga0070679_100028649
186 Ga0068861_100030631
187 Ga0081455_10001544
188 Ga0081538_10001212
189 Ga0081539_10000834
190 Ga0070716_100098257
191 Ga0075434_100249563
192 Ga0111539_10078774
193 Ga0105245_10254259
194 Ga0105241_10047505
195 Ga0105249_10187919
196 Ga0163163_10183619
197 Ga0163163_10520761
198 Ga0163163_10818596
199 Ga0157380_10147108
200 Ga0157379_10289242
201 Ga0163161_10054187
202 Ga0197907_11201908
203 Ga0197907_11410531
204 Ga0206351_10531023
205 Ga0206351_10568519
206 Ga0206350_10388726
207 Ga0206354_10424194
208 Ga0213875_10000225
209 Ga0213875_10001346
210 Ga0213875_10060532
211 Ga0224712_10022983
212 Ga0207647_10047837
213 Ga0207705_10120623
214 Ga0207654_10277889
215 Ga0207693_10042636
216 Ga0207663_10140785
217 Ga0207660_10057976
218 Ga0207652_10004965
219 Ga0207700_10011239
220 Ga0207700_10354823
221 Ga0207700_10472705
222 Ga0207664_10029439
223 Ga0207664_10475442
224 Ga0207665_10002140
225 Ga0307413_10036437
226 Ga0307413_10045017
227 Ga0307413_10082612
228 Ga0307410_10032086
229 Ga0307410_10094203
230 Ga0307406_10026069
231 Ga0307406_10090946
232 Ga0307407_10035410
233 Ga0307412_10182825
234 Ga0307412_10445418
235 Ga0307409_100021941
236 Ga0307416_100187179
237 Ga0307416_100510346
238 Ga0307414_10048158
239 Ga0307414_10210392
240 Ga0307414_10416741
241 Ga0307411_10024262
242 Ga0307415_100043077
243 Ga0307415_100145417
244 Ga0307415_100586609
245 Ga0373936_0008285
246 Ga0373946_0000452
247 Ga0373935_0023280
248 Ga0373927_0144876
249 Ga0373947_0139382
250 Ga0372808_009887
251 Ga0395900_0038166
252 Ga0395900_0067460
253 Ga0395898_0029492
254 Ga0395898_0143556
255 Ga0436364_0420889
256 Ga0436364_0455306
257 Ga0436364_0691136
258 Ga0395901_0018649
259 Ga0395901_0777288
260 Ga0450922_002019
261 Ga0439460_0056970
262 Ga0466965_0060571
263 Ga0466963_0063602
264 Ga0466963_0178511
265 Ga0466960_0189100
266 Ga0466959_0366092
267 Ga0466967_0000787
268 Ga0495641_0006750
269 Ga0495653_0028476
270 Ga0495650_0020225
271 Ga0495582_0035481
272 Ga0495664_0000449
273 Ga0495652_0053748
274 Ga0495597_0000964
275 Ga0495635_0023681
276 Ga0495657_0056031
277 Ga0495646_0092696
278 Ga0495604_0246469
279 Ga0495676_0005502
280 Ga0495684_0002060
281 Ga0496102_0004666
282 Ga0496103_0151139
283 Ga0496106_0314641
284 Ga0496109_0201005
285 Ga0496110_0030458
286 Ga0496113_0345226
287 Ga0496115_0175157
288 Ga0496126_0026567
289 Ga0496126_0102479
290 Ga0496126_0294028
291 Ga0501033_0091291
292 Ga0501036_0059089
293 Ga0501039_0051677
294 Ga0501040_0012350
295 Ga0501040_0072239
296 Ga0501041_0028387
297 Ga0501041_0073659
298 Ga0501042_0032856
299 Ga0501042_0057039
300 Ga0501042_0224471
301 Ga0501043_0104399
302 Ga0501046_0033864
303 Ga0501048_0093494
304 Ga0501048_0130411
305 Ga0501071_0013047
306 Ga0501072_0112509
307 Ga0501074_0102177
308 Ga0501075_0049613
309 Ga0501075_0087661
310 Ga0501076_0003572
311 Ga0501076_0019754
312 Ga0501077_0003507
313 Ga0501077_0003834
314 Ga0501077_0041542
315 Ga0501079_0228662
316 Ga0501080_0014985
317 Ga0501080_0265547
318 Ga0501081_0017588
319 Ga0501081_0028164
320 Ga0501081_0098274
321 Ga0501083_0040759
322 Ga0501035_0166362
323 Ga0501044_0434337
324 Ga0501045_0086524
325 nmdc:mga05p37_269025_c1
326 nmdc:mga05p37_486770_c1
327 nmdc:mga08y16_97084_c1
328 nmdc:mga08x19_147208_c1
329 Ga0495601_0102245
330 Ga0500559_0007497
331 Ga0500588_0028011
332 Ga0501084_0008409
333 Ga0501084_0093447
334 Ga0501084_0344367
335 Ga0590071_004337
336 Ga0590077_029582
337 Ga0587078_002919
338 Ga0501082_0029948
339 Ga0501082_0032870
340 Ga0501082_0371505
341 Ga0530510_0112686
342 Ga0530510_0285644
343 2623501376
344 2870784539

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF12706

Lactamase_B_2

Beta-lactamase superfamily domain

85

300

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
4z67-assembly1.cif.gz_A the 1.5-angstrom crystal structure of mn(2+)-bound pqqb from pseudomonas putida 0.9546 2 292
6e13-assembly1.cif.gz_A-2 pseudomonas putida pqqb with a non-physiological zinc at the active site binds the substrate mimic, 5-cysteinyl-3,4-dihydroxyphenylalanine (5-cys-dopa), non-specifically but supports the proposed function of the enzyme in pyrroloquinoline quinone biosynthesis. 0.9528 2 292
4z67-assembly1.cif.gz_A the 1.5-angstrom crystal structure of mn(2+)-bound pqqb from pseudomonas putida 0.9483 2 292
6e13-assembly1.cif.gz_A-2 pseudomonas putida pqqb with a non-physiological zinc at the active site binds the substrate mimic, 5-cysteinyl-3,4-dihydroxyphenylalanine (5-cys-dopa), non-specifically but supports the proposed function of the enzyme in pyrroloquinoline quinone biosynthesis. 0.9465 2 292
1xto-assembly1.cif.gz_A-2 crystal structure of the coenzyme pqq synthesis protein (pqqb) from pseudomonas putida, northeast structural genomics target ppr6 0.9445 1 292
ID Description Score Start End Superfamily
6e13A00 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.9528 2 292 3.60.15.10
6e13A00 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.9465 2 292 3.60.15.10
4z7rA00 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.9139 1 292 3.60.15.10
4z7rA00 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.9109 1 292 3.60.15.10
af_P16692_1_251_3.60.15.10 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.7836 2 290 3.60.15.10
ID Description Score Start End GO Terms
AF-A0A7V8JR08-F1-model_v4 Coenzyme PQQ synthesis protein B 0.9872 203 292
AF-A0A2N2SAG2-F1-model_v4 Pyrroloquinoline quinone biosynthesis protein B 0.985 207 292
AF-A0A7V9T4R8-F1-model_v4 Coenzyme PQQ synthesis protein B 0.9817 35 292 GO:0018189
AF-A0A524Q1R6-F1-model_v4 Coenzyme PQQ synthesis protein B (Pyrroloquinoline quinone biosynthesis protein B) 0.979 173 292 GO:0018189
AF-A0A2V6UKZ1-F1-model_v4 Pyrroloquinoline quinone biosynthesis protein PqqB 0.979 173 292

Map