F259904

General Info

Members Datasets Scaffolds Average Seq Length
172 134 142 647

Family's Representative Sequence

Representative Sequence 3300003316|rootH1_10041819|rootH1_100418192
Length 664
Sequence MNRVYNNILRLSVLTMFTMTGCKKILDEKPRAIFTPDYFKTQAGVVGGITSCYGHMRYMYGNGYFLNSNEISTDEATWGQNSDGNVKNLDFSGVGTIDPASSNTGILWGAAFPNINTASGVIENGAAVGVSDALIAEARFFRAFDYFLLVQTFGGVPLDLGAGELKFNTSTVRTSKRNTVPEVYTKAVFPDLLTAIDKLPTSGRVVGGVTQTVARLFLAKAYLTYGWWLQNPNGIPTYPDAQRTDPAGHNAAWYFQAAYDTATAAIQSPGPFGLQPTFYDVSLATNDRNNETLLYADHTQSSSIYNGGDLSYSGGGFGTDSFAAWFEQWNYTNIKSSTSTTAWAAVSSVQRAAVQSLGRPWTMLAPPQAIFKNTFADKTNDSRYDGTFVTRYRTNFVEAAVKVNGAVPAFLYNANFLPVAENDPVLSFLNADVGGVDYSNAKFNSTVGAGVLPGRADFVIEPSAFSRICYPGTWKLGPYRTDNNGGLGSPNASLTRPFPVAKFSELFFIAAEAAVKGATTKAVSGTYANDGTARGLINVIRARAGKWRFDNGNNVTKIEDNSAAMIAATPGTIDINYILAERTREYFGEGYRWFDLVRTQKWTELSSSFQIAGATNPNDWKDHTVSTVSRTITPAYYLRPIPQSQLDGMDMSAADKKAYQNPGY

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2162886011 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v2 (version 2) Metagenome Rhizosphere
3 2513020052 Flavobacterium sp. CF136 Isolate Rhizosphere
4 2585428187 Chryseobacterium sp. YR460 Isolate Rhizosphere
5 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
6 2738541279 Flavobacterium sp. GV069 Isolate Unclassified
7 2738541283 Pedobacter sp. OK701 Isolate Unclassified
8 2738541285 Flavobacterium sp. GV030 Isolate Unclassified
9 2738543007 Flavobacterium sp. GV063 Isolate Unclassified
10 2739367857 Flavobacterium sp. GV029 Isolate Unclassified
11 2739367858 Flavobacterium sp. GV028 Isolate Unclassified
12 2775506739 Chryseobacterium sp. 1335 Isolate Unclassified
13 2818991444 Filimonas endophytica 3197 Isolate Unclassified
14 2842083920 Chryseobacterium lathyri KCTC 22544 Isolate Rhizosphere
15 2842903701 Olivibacter sp. R-72191 Isolate Unclassified
16 2857613821 Flavobacterium sp. R-72247 Isolate Unclassified
17 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
18 2896317667 Sphingobacterium sp. SGR-19 Isolate Rhizosphere
19 2896344016 Sphingobacterium sp. SGL-16 Isolate Rhizosphere
20 2904419702 Flavobacterium sp. 1355 Isolate Rhizosphere
21 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
22 2905999023 Chryseobacterium elymi KCTC 22547 Isolate Rhizosphere
23 2919097161 Chryseobacterium ginsenosidimutans 1394 Isolate Rhizosphere
24 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
25 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
26 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
27 2945924605 Chryseobacterium ginsenosidimutans W1I9 Isolate Rhizosphere
28 2946019816 Chryseobacterium sp. W4I1 Isolate Rhizosphere
29 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified
30 2977243572 Chryseobacterium sp. SORGH_AS 447 Isolate Unclassified
31 3003233435 Sphingobacterium shayense CrR18 Isolate Unclassified
32 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
33 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
34 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
35 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
36 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
37 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
38 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
39 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
40 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
41 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
42 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
43 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
44 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
45 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
46 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
47 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
48 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
49 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
50 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
51 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
52 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
53 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
54 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
55 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
56 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
57 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
58 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
59 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
60 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
61 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
62 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
63 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
75 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
76 3300030731 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 3 Metagenome Rhizosphere
77 3300030732 Rhizosphere soil microbial communities in infected wheat plant from Wellcamp field in Toowoomba, Australia - sample 1 Metagenome Rhizosphere
78 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
79 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
80 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
81 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
82 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
83 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
84 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
85 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
86 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
87 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
88 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
89 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
90 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
91 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
92 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
93 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
94 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
95 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
96 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
97 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
98 3300041407 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z080117_5416 Metagenome Rhizosphere
99 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
100 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
101 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
102 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
103 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
104 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
105 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
106 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
107 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
108 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
109 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
110 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
111 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
112 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
113 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
114 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
115 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
116 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
117 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
118 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
119 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
120 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
121 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
122 3300049671 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H12_A_3_drought Metagenome Rhizosphere
123 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
124 3300049681 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_B_3_drought Metagenome Rhizosphere
125 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
126 3300049758 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D15_A_3_drought Metagenome Rhizosphere
127 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
128 3300049766 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_B_4_drought Metagenome Rhizosphere
129 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
130 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
131 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
132 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
133 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
134 8056440228 Flavobacterium hibisci THG-HG1.4 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 82.56
Metatranscriptomes 0
Isolates 17.44

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.91
Nodule 0
Rhizoplane 0
Rhizosphere 81.98
Stem 0
Stem Tuber 0
Unclassified 15.12

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_186650 2162886007 Bacteria 2006
2 MRS1b_contig_6265894 2162886011 Bacteria 2874
3 rootH1_10041819 3300003316 Bacteria 14445
4 rootH1_10141136 3300003316 Bacteria 2756
5 rootH2_10003481 3300003320 Bacteria 17349
6 rootH1_10002972 3300003316 Bacteria 19140
7 rootH1_10002972 3300003323 Bacteria 60440
8 Ga0065714_10003938 3300005288 Bacteria 6636
9 Ga0065714_10004903 3300005288 Bacteria 11433
10 Ga0065704_10071906 3300005289 Bacteria 9632
11 Ga0065715_10094546 3300005293 Bacteria 4263
12 Ga0070658_10036112 3300005327 Bacteria 3982
13 Ga0070658_10046113 3300005327 Unclassified 3527
14 Ga0070683_100000416 3300005329 Bacteria 29488
15 Ga0070683_100119318 3300005329 Bacteria 2491
16 Ga0070670_100003716 3300005331 Bacteria 12706
17 Ga0070680_100123594 3300005336 Bacteria 2161
18 Ga0070660_100003713 3300005339 Bacteria 10544
19 Ga0070660_100058491 3300005339 Bacteria 2988
20 Ga0070691_10044594 3300005341 Unclassified 2103
21 Ga0070659_100020544 3300005366 Bacteria 5019
22 Ga0070679_100000287 3300005530 Bacteria 42861
23 Ga0070679_100004901 3300005530 Bacteria 12344
24 Ga0068855_100006106 3300005563 Bacteria 14690
25 Ga0068855_100107797 3300005563 Bacteria 3200
26 Ga0068852_100003326 3300005616 Bacteria 11223
27 Ga0081540_1004517 3300005983 Bacteria 10561
28 Ga0105244_10000120 3300009036 Bacteria 82283
29 Ga0105240_10001517 3300009093 Bacteria 39516
30 Ga0105237_10003274 3300009545 Bacteria 19336
31 Ga0105239_10002351 3300010375 Bacteria 24112
32 Ga0157373_10027571 3300013100 Bacteria 4098
33 Ga0157373_10030628 3300013100 Bacteria 3871
34 Ga0157371_10000037 3300013102 Bacteria 214866
35 Ga0157371_10006668 3300013102 Bacteria 9447
36 Ga0157371_10007425 3300013102 Bacteria 8877
37 Ga0157371_10030604 3300013102 Bacteria 3882
38 Ga0157371_10035616 3300013102 Bacteria 3567
39 Ga0157370_10000410 3300013104 Bacteria 54091
40 Ga0157370_10003206 3300013104 Bacteria 19346
41 Ga0157370_10003481 3300013104 Bacteria 18469
42 Ga0157370_10039091 3300013104 Bacteria 4586
43 Ga0157369_10004679 3300013105 Bacteria 16088
44 Ga0157369_10040720 3300013105 Bacteria 5071
45 Ga0157369_10044619 3300013105 Bacteria 4824
46 Ga0157372_10000001 3300013307 Bacteria 791349
47 Ga0157372_10075100 3300013307 Bacteria 3813
48 Ga0157372_10084637 3300013307 Bacteria 3595
49 Ga0163163_10003924 3300014325 Bacteria 12683
50 Ga0182008_10000341 3300014497 Bacteria 36348
51 Ga0182006_1010874 3300015261 Bacteria 4026
52 Ga0182007_10026506 3300015262 Bacteria 2007
53 Ga0163161_10000023 3300017792 Bacteria 205048
54 Ga0207655_1000266 3300025728 Bacteria 82011
55 Ga0207705_10037250 3300025909 Bacteria 3480
56 Ga0207707_10098206 3300025912 Bacteria 2560
57 Ga0207695_10000110 3300025913 Bacteria 250079
58 Ga0207660_10065322 3300025917 Bacteria 2629
59 Ga0207660_10070226 3300025917 Bacteria 2545
60 Ga0207657_10013460 3300025919 Bacteria 8024
61 Ga0207657_10033859 3300025919 Bacteria 4600
62 Ga0207657_10042167 3300025919 Bacteria 4028
63 Ga0207652_10000045 3300025921 Bacteria 125343
64 Ga0207652_10000891 3300025921 Bacteria 28277
65 Ga0207652_10018322 3300025921 Bacteria 5742
66 Ga0207650_10002837 3300025925 Bacteria 11975
67 Ga0207690_10007861 3300025932 Bacteria 6333
68 Ga0207661_10014966 3300025944 Bacteria 5696
69 Ga0207674_10057237 3300026116 Bacteria 3952
70 Ga0265334_10026614 3300028573 Bacteria 2335
71 Ga0307511_10001181 3300030521 Bacteria 27727
72 Ga0316177_1152729 3300030731 Bacteria 7429
73 Ga0316176_1002041 3300030732 Bacteria 7401
74 Ga0316183_1099321 3300030742 Bacteria 18877
75 Ga0316576_10037226 3300031727 Bacteria 3482
76 Ga0316578_10001038 3300031728 Bacteria 10685
77 Ga0307413_10000057 3300031824 Bacteria 29059
78 Ga0307410_10000029 3300031852 Bacteria 50877
79 Ga0307406_10000012 3300031901 Bacteria 111189
80 Ga0307407_10004304 3300031903 Bacteria 6015
81 Ga0307412_10000028 3300031911 Bacteria 213966
82 Ga0307416_100000052 3300032002 Bacteria 114516
83 Ga0307414_10000001 3300032004 Bacteria 1352954
84 Ga0307411_10000011 3300032005 Bacteria 204666
85 Ga0316580_10004513 3300032139 Bacteria 4043
86 Ga0307510_10000905 3300033180 Bacteria 31345
87 Ga0316582_0003442 3300036647 Bacteria 7767
88 Ga0316584_0064639 3300036712 Bacteria 2740
89 Ga0395899_0000150 3300037312 Bacteria 105946
90 Ga0395899_0000785 3300037312 Bacteria 31067
91 Ga0395900_0001073 3300037418 Bacteria 34821
92 Ga0395900_0001955 3300037418 Bacteria 23285
93 Ga0395900_0014435 3300037418 Bacteria 8061
94 Ga0395898_0019392 3300037466 Bacteria 6922
95 Ga0395901_0022059 3300038443 Bacteria 6526
96 Ga0439436_0002229 3300041404 Bacteria 5798
97 Ga0439447_000129 3300041407 Bacteria 25821
98 Ga0439466_0001353 3300041411 Bacteria 9519
99 Ga0439465_0000863 3300041413 Bacteria 9570
100 Ga0439445_0000018 3300042004 Bacteria 22044
101 Ga0439457_001146 3300042014 Bacteria 7994
102 Ga0451577_0141411 3300042876 Bacteria 2163
103 Ga0466969_0000038 3300044656 Bacteria 74610
104 Ga0466969_0000083 3300044656 Bacteria 49836
105 Ga0466972_0000086 3300044658 Bacteria 85000
106 Ga0466972_0003658 3300044658 Bacteria 7639
107 Ga0466966_0012120 3300044684 Bacteria 5711
108 Ga0453684_0007116 3300044712 Bacteria 20852
109 Ga0453684_0009381 3300044712 Bacteria 17140
110 Ga0453684_0037568 3300044712 Bacteria 6645
111 Ga0453684_0047808 3300044712 Bacteria 5668
112 Ga0466957_0001569 3300044842 Bacteria 12035
113 Ga0466957_0002268 3300044842 Bacteria 10304
114 Ga0466959_0000008 3300045049 Bacteria 179537
115 Ga0466959_0005442 3300045049 Bacteria 8719
116 Ga0495585_0000017 3300046492 Bacteria 164054
117 Ga0495606_0004264 3300046507 Bacteria 14431
118 Ga0495610_0000001 3300046512 Bacteria 1620061
119 Ga0495632_0041964 3300046519 Bacteria 2295
120 Ga0495625_0004011 3300046660 Bacteria 14092
121 Ga0495686_0000061 3300047472 Bacteria 236734
122 Ga0496122_0000577 3300048925 Bacteria 75200
123 Ga0496122_0035482 3300048925 Bacteria 4055
124 Ga0496123_0007392 3300048926 Bacteria 10373
125 Ga0496125_0036747 3300048928 Bacteria 4270
126 Ga0501033_0076967 3300049570 Bacteria 2449
127 Ga0501034_0021318 3300049571 Bacteria 6607
128 Ga0501047_0005445 3300049581 Bacteria 11977
129 Ga0501238_000092 3300049671 Bacteria 14400
130 Ga0501249_000006 3300049679 Bacteria 224148
131 Ga0501249_003103 3300049679 Bacteria 3344
132 Ga0501251_000446 3300049681 Bacteria 3710
133 Ga0501225_0000109 3300049705 Bacteria 25558
134 Ga0501241_006263 3300049758 Bacteria 2191
135 Ga0501266_000006 3300049763 Bacteria 312183
136 Ga0501269_000131 3300049766 Bacteria 23477
137 Ga0501044_0007654 3300049823 Bacteria 11876
138 Ga0500578_0020926 3300053086 Bacteria 4206
139 Ga0500641_0000003 3300053096 Bacteria 284831
140 Ga0500641_0000064 3300053096 Bacteria 42920
141 Ga0500608_015220 3300053122 Bacteria 3451
142 Ga0500658_0000007 3300053134 Bacteria 284115

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300015262 Ga0182007_10026506 Ga0182007_100265062 577
2 3300046519 Ga0495632_0041964 Ga0495632_0041964_84_1832 582
3 3300005329 Ga0070683_100000416 Ga0070683_1000004165 593
4 3300005341 Ga0070691_10044594 Ga0070691_100445941 593
5 3300030521 Ga0307511_10001181 Ga0307511_1000118122 597
6 3300033180 Ga0307510_10000905 Ga0307510_100009052 600
7 3300044842 Ga0466957_0002268 Ga0466957_0002268_4664_6643 600
8 3300005288 Ga0065714_10004903 Ga0065714_100049032 610
9 3300044656 Ga0466969_0000083 Ga0466969_0000083_19626_21512 620
10 3300049681 Ga0501251_000446 Ga0501251_000446_1818_3695 621
11 3300053096 Ga0500641_0000064 Ga0500641_0000064_3448_5409 625
12 3300047472 Ga0495686_0000061 Ga0495686_0000061_169753_171681 630
13 iso_pu_bacteria 2643221667 2644370740 631
14 iso_pu_bacteria 2929150217 2929154595 631
15 iso_pu_bacteria 2977232053 2977233156 631
16 3300049823 Ga0501044_0007654 Ga0501044_0007654_2486_4396 632
17 3300025909 Ga0207705_10037250 Ga0207705_100372501 634
18 3300005288 Ga0065714_10003938 Ga0065714_100039382 635
19 3300005293 Ga0065715_10094546 Ga0065715_100945462 635
20 3300013102 Ga0157371_10007425 Ga0157371_100074252 635
21 3300013307 Ga0157372_10000001 Ga0157372_10000001534 635
22 3300037312 Ga0395899_0000150 Ga0395899_0000150_40104_42026 635
23 3300044712 Ga0453684_0007116 Ga0453684_0007116_18117_20039 635
24 3300053096 Ga0500641_0000003 Ga0500641_0000003_36156_38075 635
25 3300044712 Ga0453684_0009381 Ga0453684_0009381_13722_15689 636
26 3300046507 Ga0495606_0004264 Ga0495606_0004264_7350_9299 637
27 iso_pu_bacteria 2857613821 2857613850 638
28 iso_pu_bacteria 2904419702 2904423776 638
29 iso_pu_bacteria 2738541279 2738734330 639
30 iso_pu_bacteria 2738541285 2738767088 639
31 iso_pu_bacteria 2738543007 2739215911 639
32 iso_pu_bacteria 2739367857 2740001499 639
33 iso_pu_bacteria 2739367858 2740006315 639
34 iso_pu_bacteria 2857618242 2857620631 639
35 iso_pu_bacteria 2919191525 2919196196 639
36 iso_pu_bacteria 8056440228 8056443769 639
37 iso_pu_bacteria 2513020052 2513235477 640
38 iso_pu_bacteria 2738541283 2738754543 640
39 3300028573 Ga0265334_10026614 Ga0265334_100266142 641
40 iso_pu_bacteria 2818991444 2819587278 641
41 iso_pu_bacteria 2896317667 2896319721 641
42 iso_pu_bacteria 2896344016 2896344101 641
43 iso_pu_bacteria 2904780799 2904781313 641
44 iso_pu_bacteria 2919177583 2919178918 641
45 iso_pu_bacteria 3003233435 3003234144 641
46 3300031852 Ga0307410_10000029 Ga0307410_1000002927 642
47 3300031901 Ga0307406_10000012 Ga0307406_1000001257 642
48 3300031903 Ga0307407_10004304 Ga0307407_100043044 642
49 3300032004 Ga0307414_10000001 Ga0307414_1000000132 642
50 3300036712 Ga0316584_0064639 Ga0316584_0064639_628_2565 642
51 3300041411 Ga0439466_0001353 Ga0439466_0001353_6231_8174 642
52 3300049671 Ga0501238_000092 Ga0501238_000092_6681_8624 642
53 iso_pu_bacteria 2775506739 2775673629 642
54 iso_pu_bacteria 2842083920 2842083924 642
55 iso_pu_bacteria 2842903701 2842908803 642
56 iso_pu_bacteria 2905999023 2906000650 642
57 iso_pu_bacteria 2919097161 2919097735 642
58 iso_pu_bacteria 2946019816 2946022253 642
59 iso_pu_bacteria 2977243572 2977246542 642
60 2162886011 MRS1b_contig_6265894 MRS1b_0492.00002890 643
61 3300005331 Ga0070670_100003716 Ga0070670_1000037167 643
62 3300009036 Ga0105244_10000120 Ga0105244_1000012023 643
63 3300013104 Ga0157370_10000410 Ga0157370_100004104 643
64 3300014325 Ga0163163_10003924 Ga0163163_100039242 643
65 3300017792 Ga0163161_10000023 Ga0163161_10000023110 643
66 3300025728 Ga0207655_1000266 Ga0207655_100026623 643
67 3300025925 Ga0207650_10002837 Ga0207650_100028373 643
68 3300031824 Ga0307413_10000057 Ga0307413_1000005714 643
69 3300032005 Ga0307411_10000011 Ga0307411_1000001162 643
70 3300041407 Ga0439447_000129 Ga0439447_000129_19913_21859 643
71 3300049679 Ga0501249_000006 Ga0501249_000006_43759_45705 643
72 3300049679 Ga0501249_003103 Ga0501249_003103_554_2500 643
73 3300049758 Ga0501241_006263 Ga0501241_006263_66_2012 643
74 3300049763 Ga0501266_000006 Ga0501266_000006_66571_68517 643
75 3300053134 Ga0500658_0000007 Ga0500658_0000007_231477_233423 643
76 iso_pu_bacteria 2585428187 2588234356 643
77 iso_pu_bacteria 2945924605 2945927362 643
78 3300003316 rootH1_10041819 rootH1_100418192 644
79 3300003320 rootH2_10003481 rootH2_100034815 644
80 3300005563 Ga0068855_100006106 Ga0068855_10000610610 644
81 3300005983 Ga0081540_1004517 Ga0081540_10045174 644
82 3300009093 Ga0105240_10001517 Ga0105240_1000151724 644
83 3300009545 Ga0105237_10003274 Ga0105237_100032746 644
84 3300010375 Ga0105239_10002351 Ga0105239_1000235114 644
85 3300013102 Ga0157371_10006668 Ga0157371_100066683 644
86 3300013104 Ga0157370_10003206 Ga0157370_1000320612 644
87 3300013104 Ga0157370_10039091 Ga0157370_100390911 644
88 3300013105 Ga0157369_10040720 Ga0157369_100407202 644
89 3300013307 Ga0157372_10084637 Ga0157372_100846372 644
90 3300014497 Ga0182008_10000341 Ga0182008_1000034111 644
91 3300015261 Ga0182006_1010874 Ga0182006_10108742 644
92 3300025913 Ga0207695_10000110 Ga0207695_10000110163 644
93 3300025944 Ga0207661_10014966 Ga0207661_100149662 644
94 3300037418 Ga0395900_0001073 Ga0395900_0001073_1212_3206 644
95 3300042876 Ga0451577_0141411 Ga0451577_0141411_90_2036 644
96 3300044656 Ga0466969_0000038 Ga0466969_0000038_15927_17915 644
97 3300044684 Ga0466966_0012120 Ga0466966_0012120_1429_3417 644
98 3300044712 Ga0453684_0037568 Ga0453684_0037568_2274_4220 644
99 3300045049 Ga0466959_0000008 Ga0466959_0000008_25945_27933 644
100 3300045049 Ga0466959_0005442 Ga0466959_0005442_3146_5113 644
101 3300046492 Ga0495585_0000017 Ga0495585_0000017_85738_87732 644
102 3300048925 Ga0496122_0000577 Ga0496122_0000577_34176_36170 644
103 3300048926 Ga0496123_0007392 Ga0496123_0007392_3106_5100 644
104 3300048928 Ga0496125_0036747 Ga0496125_0036747_1775_3769 644
105 3300053122 Ga0500608_015220 Ga0500608_015220_1017_3011 644
106 3300003316 rootH1_10141136 rootH1_101411362 645
107 3300003323 rootH1_10002972 rootH1_1000297232 645
108 3300005327 Ga0070658_10036112 Ga0070658_100361122 645
109 3300005327 Ga0070658_10046113 Ga0070658_100461133 645
110 3300005329 Ga0070683_100119318 Ga0070683_1001193182 645
111 3300005336 Ga0070680_100123594 Ga0070680_1001235941 645
112 3300005339 Ga0070660_100003713 Ga0070660_1000037136 645
113 3300005339 Ga0070660_100058491 Ga0070660_1000584912 645
114 3300005366 Ga0070659_100020544 Ga0070659_1000205442 645
115 3300005530 Ga0070679_100000287 Ga0070679_10000028735 645
116 3300005530 Ga0070679_100004901 Ga0070679_1000049012 645
117 3300005563 Ga0068855_100107797 Ga0068855_1001077974 645
118 3300005616 Ga0068852_100003326 Ga0068852_1000033262 645
119 3300013100 Ga0157373_10027571 Ga0157373_100275712 645
120 3300013100 Ga0157373_10030628 Ga0157373_100306282 645
121 3300013102 Ga0157371_10030604 Ga0157371_100306041 645
122 3300013102 Ga0157371_10035616 Ga0157371_100356162 645
123 3300013105 Ga0157369_10044619 Ga0157369_100446192 645
124 3300013307 Ga0157372_10075100 Ga0157372_100751002 645
125 3300025912 Ga0207707_10098206 Ga0207707_100982062 645
126 3300025917 Ga0207660_10065322 Ga0207660_100653222 645
127 3300025917 Ga0207660_10070226 Ga0207660_100702261 645
128 3300025919 Ga0207657_10013460 Ga0207657_100134602 645
129 3300025919 Ga0207657_10033859 Ga0207657_100338592 645
130 3300025919 Ga0207657_10042167 Ga0207657_100421672 645
131 3300025921 Ga0207652_10000045 Ga0207652_1000004523 645
132 3300025921 Ga0207652_10000891 Ga0207652_1000089118 645
133 3300025921 Ga0207652_10018322 Ga0207652_100183222 645
134 3300025932 Ga0207690_10007861 Ga0207690_100078612 645
135 3300026116 Ga0207674_10057237 Ga0207674_100572372 645
136 3300030731 Ga0316177_1152729 Ga0316177_11527296 645
137 3300030732 Ga0316176_1002041 Ga0316176_10020412 645
138 3300030742 Ga0316183_1099321 Ga0316183_109932115 645
139 3300031727 Ga0316576_10037226 Ga0316576_100372262 645
140 3300031728 Ga0316578_10001038 Ga0316578_100010388 645
141 3300032139 Ga0316580_10004513 Ga0316580_100045132 645
142 3300036647 Ga0316582_0003442 Ga0316582_0003442_1290_3242 645
143 3300037312 Ga0395899_0000785 Ga0395899_0000785_19976_21928 645
144 3300037418 Ga0395900_0001955 Ga0395900_0001955_19992_21944 645
145 3300037418 Ga0395900_0014435 Ga0395900_0014435_3324_5276 645
146 3300037466 Ga0395898_0019392 Ga0395898_0019392_2234_4186 645
147 3300038443 Ga0395901_0022059 Ga0395901_0022059_877_2829 645
148 3300041404 Ga0439436_0002229 Ga0439436_0002229_3815_5764 645
149 3300042014 Ga0439457_001146 Ga0439457_001146_5521_7470 645
150 3300044658 Ga0466972_0000086 Ga0466972_0000086_13710_15659 645
151 3300044658 Ga0466972_0003658 Ga0466972_0003658_2401_4350 645
152 3300044712 Ga0453684_0047808 Ga0453684_0047808_167_2155 645
153 3300044842 Ga0466957_0001569 Ga0466957_0001569_3838_5787 645
154 3300045049 Ga0466959_0000008 Ga0466959_0000008_167699_169660 645
155 3300049570 Ga0501033_0076967 Ga0501033_0076967_380_2338 645
156 3300049571 Ga0501034_0021318 Ga0501034_0021318_2296_4248 645
157 3300049581 Ga0501047_0005445 Ga0501047_0005445_4680_6644 645
158 3300049705 Ga0501225_0000109 Ga0501225_0000109_11872_13821 645
159 3300053086 Ga0500578_0020926 Ga0500578_0020926_906_2855 645
160 3300013102 Ga0157371_10000037 Ga0157371_100000377 646
161 3300013104 Ga0157370_10003481 Ga0157370_100034817 646
162 3300013105 Ga0157369_10004679 Ga0157369_100046795 646
163 3300031911 Ga0307412_10000028 Ga0307412_10000028181 646
164 3300032002 Ga0307416_100000052 Ga0307416_10000005257 646
165 3300041413 Ga0439465_0000863 Ga0439465_0000863_1629_3581 646
166 3300042004 Ga0439445_0000018 Ga0439445_0000018_12970_14919 646
167 3300046512 Ga0495610_0000001 Ga0495610_0000001_1162778_1164727 646
168 3300048925 Ga0496122_0035482 Ga0496122_0035482_342_2303 646
169 3300049766 Ga0501269_000131 Ga0501269_000131_14839_16791 646
170 2162886007 SwRhRL2b_contig_186650 SwRhRL2b_0902.00007430 647
171 3300005289 Ga0065704_10071906 Ga0065704_100719062 647
172 3300046660 Ga0495625_0004011 Ga0495625_0004011_6745_8688 647

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF14322

SusD-like_3

Starch-binding associating with outer membrane

26

223

0.73

PF07980

SusD_RagB

SusD family

303

664

0.69

Structural Annotation

Top 5 Hits

ID Description Score Start End
7nek-assembly1.cif.gz_A susd protein from human gut uncultured bacteroides 0.9435 25 647
7nek-assembly1.cif.gz_A susd protein from human gut uncultured bacteroides 0.939 25 647
3fwv-assembly2.cif.gz_B crystal structure of a redesigned tpr protein, t-mod(vmy), in complex with meevf peptide 0.8268 106 148
3l22-assembly1.cif.gz_A crystal structure of a susd superfamily protein (bf_0597) from bacteroides fragilis at 2.05 a resolution 0.7486 37 630
3myv-assembly2.cif.gz_B crystal structure of a susd superfamily protein (bvu_0732) from bacteroides vulgatus atcc 8482 at 1.80 a resolution 0.7405 41 647
ID Description Score Start End Superfamily
af_Q54DA8_242_370_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.8279 106 148 1.25.40.10
3ck9B01 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat; 0.814 63 198 1.25.40.390
af_Q5VMW9_14_153_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.8127 108 221 1.25.40.10
af_Q6NNB2_501_653_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.7844 108 263 1.25.40.10
af_A0A1D8PN90_262_393_1.25.40.10 Mainly Alpha;Alpha Horseshoe;Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat;Tetratricopeptide repeat domain 0.7699 105 198 1.25.40.10
ID Description Score Start End GO Terms
AF-A0A5J4P5R5-F1-model_v4 SusD-like N-terminal domain-containing protein 0.9746 95 273
AF-A0A359FZE4-F1-model_v4 RagB/SusD family nutrient uptake outer membrane protein 0.966 85 647 GO:0009279
AF-A0A4Q5ZM40-F1-model_v4 RagB/SusD family nutrient uptake outer membrane protein 0.9605 57 569
AF-A0A5J4P5R5-F1-model_v4 SusD-like N-terminal domain-containing protein 0.9589 95 273
AF-A0A1V5NF60-F1-model_v4 SusD family protein 0.9494 313 647 GO:0009279

Feature Viewer

pLDDT pTM Quality
84.67 0.88 High
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Predicted Structure (AlphaFold2)

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