F259090
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 171 | 109 | 342 | 457 |
Family's Representative Sequence
| Representative Sequence | 3300033179|Ga0307507_10000064|Ga0307507_1000006414 |
| Length | 529 |
| Sequence | MAKYQLLLPKMGESVAEATVIKWNKNPGDRVDADEAVMEIATDKVDSDVPSPVAGRLVEQLYQENDIVQVGAIIAIIETDEPEQVTAEPGVSSAPEVETTIPAIEVPHIAESAPVEENQAEFKEYTPFNEVKYDAKPPVADDLEVAEFQPDVAAPVDIPGISQLEPQTLSLYDQSFKGEGRFYSPLVRNIASQENISIDELDRIPGTGSEGRLTKDDLLSYIQYRNLPPAAQKTEVPVENNTQSIVQPVNAVLPEESTGNKPDALNEVITAGEPATAIPEPKPVKEPEISSVSGADEIIEMDRMRRLIADHMVMSKQTSPHVTSFVEADVTGLVLWREKVKGSFEKRENEKITFTPIFIEAVAKAIKDFPMINVTVNGTQIIKKAAINIGMATALPNGNLIVPVIKKADELNLLGITKAVNDLVGRARVGKLLPDDVREGTFTITNVGSFGNVMGTPIINQPQVAILAVGAIKKKPAVIETPQGDVIAIRHMMFLSLSYDHRVVDGALGGSFVRRVADYLEKWDANREI |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300033179 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM | Metagenome | Unclassified |
| 2 | 3300001990 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 | Metagenome | Rhizosphere |
| 3 | 3300002067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 | Metagenome | Rhizosphere |
| 4 | 3300002737 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA | Metagenome | Endosphere |
| 5 | 3300003320 | Sugarcane root Sample H2 | Metagenome | Unclassified |
| 6 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 7 | 3300003794 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 | Metagenome | Endosphere |
| 8 | 3300004803 | Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - soil CB-2 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 9 | 3300005288 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) | Metagenome | Rhizosphere |
| 10 | 3300005327 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG | Metagenome | Rhizosphere |
| 11 | 3300005328 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG | Metagenome | Rhizosphere |
| 12 | 3300005336 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG | Metagenome | Rhizosphere |
| 13 | 3300005339 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG | Metagenome | Rhizosphere |
| 14 | 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Metagenome | Rhizosphere |
| 15 | 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Metagenome | Rhizosphere |
| 16 | 3300005456 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG | Metagenome | Rhizosphere |
| 17 | 3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Metagenome | Rhizosphere |
| 18 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 19 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 20 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 21 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 22 | 3300005563 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 | Metagenome | Rhizosphere |
| 23 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 24 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 25 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 26 | 3300005718 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 | Metagenome | Rhizosphere |
| 27 | 3300006195 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 | Metagenome | Endosphere |
| 28 | 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 29 | 3300006358 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 | Metagenome | Rhizosphere |
| 30 | 3300006881 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 | Metagenome | Rhizosphere |
| 31 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 32 | 3300009174 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG | Metagenome | Rhizosphere |
| 33 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 34 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 35 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 36 | 3300013100 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG | Metagenome | Rhizosphere |
| 37 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 38 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 39 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 40 | 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Metagenome | Rhizosphere |
| 41 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 42 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 43 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 44 | 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Metagenome | Rhizosphere |
| 45 | 3300025233 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mTSA (SPAdes) (version 2) | Metagenome | Endosphere |
| 46 | 3300025250 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) | Metagenome | Unclassified |
| 47 | 3300025272 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 48 | 3300025899 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 49 | 3300025904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 50 | 3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 51 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 52 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 53 | 3300025917 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 54 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 55 | 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 56 | 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 57 | 3300025938 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 58 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 59 | 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 60 | 3300026089 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 61 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 62 | 3300026121 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 63 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 64 | 3300028794 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM | Metagenome | Unclassified |
| 65 | 3300031911 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 | Metagenome | Rhizosphere |
| 66 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 67 | 3300033180 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM | Metagenome | Unclassified |
| 68 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 69 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 70 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 71 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 72 | 3300039447 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 | Metagenome | Rhizosphere |
| 73 | 3300044684 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R | Metagenome | Rhizosphere |
| 74 | 3300044693 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R | Metagenome | Rhizosphere |
| 75 | 3300046471 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere | Metagenome | Rhizosphere |
| 76 | 3300046492 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere | Metagenome | Rhizosphere |
| 77 | 3300046506 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere | Metagenome | Rhizosphere |
| 78 | 3300046507 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere | Metagenome | Rhizosphere |
| 79 | 3300046512 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere | Metagenome | Rhizosphere |
| 80 | 3300046513 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere | Metagenome | Rhizosphere |
| 81 | 3300046524 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere | Metagenome | Rhizosphere |
| 82 | 3300046529 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere | Metagenome | Rhizosphere |
| 83 | 3300046530 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere | Metagenome | Rhizosphere |
| 84 | 3300046538 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere | Metagenome | Rhizosphere |
| 85 | 3300046558 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere | Metagenome | Rhizosphere |
| 86 | 3300046616 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere | Metagenome | Rhizosphere |
| 87 | 3300046660 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere | Metagenome | Rhizosphere |
| 88 | 3300046665 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere | Metagenome | Rhizosphere |
| 89 | 3300046683 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere | Metagenome | Rhizosphere |
| 90 | 3300046694 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere | Metagenome | Rhizosphere |
| 91 | 3300047443 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere | Metagenome | Rhizosphere |
| 92 | 3300047472 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere | Metagenome | Rhizosphere |
| 93 | 3300049459 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere | Metagenome | Rhizosphere |
| 94 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 95 | 3300050493 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation | Metagenome | Endosphere |
| 96 | 3300053125 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere | Metagenome | Endosphere |
| 97 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 98 | 3300053157 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere | Metagenome | Endosphere |
| 99 | 2599185184 | Mucilaginibacter sp. NFR10 | Isolate | Rhizoplane |
| 100 | 2738543023 | Pedobacter sp. OK628 | Isolate | Unclassified |
| 101 | 2852623160 | Mucilaginibacter sp. AK015 | Isolate | Rhizosphere |
| 102 | 2852627209 | Pedobacter sp. AK017 | Isolate | Rhizosphere |
| 103 | 2884933994 | Mucilaginibacter sp. 14171R-50 | Isolate | Rhizosphere |
| 104 | 2919186247 | Pedobacter africanus 2697 | Isolate | Rhizosphere |
| 105 | 2919437846 | Mucilaginibacter pocheonensis 3262 | Isolate | Rhizosphere |
| 106 | 2928078545 | Mucilaginibacter rubeus 1215 | Isolate | Unclassified |
| 107 | 2928147474 | Mucilaginibacter rubeus 2025 | Isolate | Unclassified |
| 108 | 2932082852 | Mucilaginibacter sp. 3215 | Isolate | Rhizosphere |
| 109 | 2939664404 | Pedobacter africanus 2990 | Isolate | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 92.98 |
| Metatranscriptomes | 0.58 |
| Isolates | 6.43 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 6.43 |
| Nodule | 0 |
| Rhizoplane | 0.58 |
| Rhizosphere | 84.8 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0307507_10000064 | 3300033179 | Bacteria | 161226 |
| 2 | JGI24737J22298_10001721 | 3300001990 | Bacteria | 7796 |
| 3 | JGI24737J22298_10002797 | 3300001990 | Bacteria | 6179 |
| 4 | JGI24735J21928_10000002 | 3300002067 | Bacteria | 624895 |
| 5 | JGI24735J21928_10008015 | 3300002067 | Bacteria | 3430 |
| 6 | JGI25162J39368_1000024 | 3300002737 | Bacteria | 229507 |
| 7 | rootH2_10002858 | 3300003320 | Bacteria | 54174 |
| 8 | rootH2_10035181 | 3300003320 | Bacteria | 29518 |
| 9 | rootH2_10178236 | 3300003320 | Bacteria | 2894 |
| 10 | rootH1_10128484 | 3300003323 | Bacteria | 4079 |
| 11 | Ga0055531_10000491 | 3300003794 | Bacteria | 36227 |
| 12 | Ga0058862_12743218 | 3300004803 | Bacteria | 1799 |
| 13 | Ga0065714_10003176 | 3300005288 | Bacteria | 9707 |
| 14 | Ga0065714_10010197 | 3300005288 | Bacteria | 4211 |
| 15 | Ga0070658_10076573 | 3300005327 | Bacteria | 2743 |
| 16 | Ga0070676_10002156 | 3300005328 | Bacteria | 10028 |
| 17 | Ga0070680_100004089 | 3300005336 | Bacteria | 10926 |
| 18 | Ga0070660_100087973 | 3300005339 | Bacteria | 2446 |
| 19 | Ga0070671_100052758 | 3300005355 | Bacteria | 3381 |
| 20 | Ga0070673_100006796 | 3300005364 | Bacteria | 7470 |
| 21 | Ga0070678_100236413 | 3300005456 | Bacteria | 1525 |
| 22 | Ga0070662_100002169 | 3300005457 | Bacteria | 12029 |
| 23 | Ga0070681_10018151 | 3300005458 | Bacteria | 7033 |
| 24 | Ga0070679_100014017 | 3300005530 | Bacteria | 7685 |
| 25 | Ga0068853_100014314 | 3300005539 | Bacteria | 6492 |
| 26 | Ga0070665_100000003 | 3300005548 | Bacteria | 811857 |
| 27 | Ga0068855_100008317 | 3300005563 | Bacteria | 12540 |
| 28 | Ga0068855_100017455 | 3300005563 | Bacteria | 8631 |
| 29 | Ga0068855_100061815 | 3300005563 | Bacteria | 4375 |
| 30 | Ga0068857_100014551 | 3300005577 | Bacteria | 6864 |
| 31 | Ga0068856_100026340 | 3300005614 | Bacteria | 5671 |
| 32 | Ga0068856_100111624 | 3300005614 | Bacteria | 2731 |
| 33 | Ga0068852_100000264 | 3300005616 | Bacteria | 35179 |
| 34 | Ga0068866_10055727 | 3300005718 | Bacteria | 2031 |
| 35 | Ga0075366_10001161 | 3300006195 | Bacteria | 13031 |
| 36 | Ga0097621_100000033 | 3300006237 | Bacteria | 69289 |
| 37 | Ga0068871_100000020 | 3300006358 | Bacteria | 84930 |
| 38 | Ga0068865_100000138 | 3300006881 | Bacteria | 38207 |
| 39 | Ga0105240_10001584 | 3300009093 | Bacteria | 38608 |
| 40 | Ga0105240_10004790 | 3300009093 | Bacteria | 20399 |
| 41 | Ga0105240_10106970 | 3300009093 | Bacteria | 3392 |
| 42 | Ga0105240_10116478 | 3300009093 | Bacteria | 3223 |
| 43 | Ga0105241_10004109 | 3300009174 | Bacteria | 10745 |
| 44 | Ga0105241_10005868 | 3300009174 | Bacteria | 9063 |
| 45 | Ga0105241_10025369 | 3300009174 | Bacteria | 4404 |
| 46 | Ga0105241_10168718 | 3300009174 | Bacteria | 1806 |
| 47 | Ga0105237_10000803 | 3300009545 | Bacteria | 42892 |
| 48 | Ga0105237_10001449 | 3300009545 | Bacteria | 31348 |
| 49 | Ga0105237_10004465 | 3300009545 | Bacteria | 16170 |
| 50 | Ga0105238_10002195 | 3300009551 | Bacteria | 19712 |
| 51 | Ga0105239_10000005 | 3300010375 | Bacteria | 496066 |
| 52 | Ga0105239_10000013 | 3300010375 | Bacteria | 327371 |
| 53 | Ga0105239_10001207 | 3300010375 | Bacteria | 35283 |
| 54 | Ga0105239_10005491 | 3300010375 | Bacteria | 14869 |
| 55 | Ga0105239_10016008 | 3300010375 | Bacteria | 8300 |
| 56 | Ga0157373_10000069 | 3300013100 | Bacteria | 91687 |
| 57 | Ga0157373_10003455 | 3300013100 | Bacteria | 11955 |
| 58 | Ga0157371_10006726 | 3300013102 | Bacteria | 9400 |
| 59 | Ga0157371_10007674 | 3300013102 | Bacteria | 8687 |
| 60 | Ga0157369_10004541 | 3300013105 | Bacteria | 16330 |
| 61 | Ga0157369_10101113 | 3300013105 | Bacteria | 3073 |
| 62 | Ga0157374_10000349 | 3300013296 | Bacteria | 42687 |
| 63 | Ga0157374_10005211 | 3300013296 | Bacteria | 10898 |
| 64 | Ga0157378_10145743 | 3300013297 | Bacteria | 2202 |
| 65 | Ga0163162_10000066 | 3300013306 | Bacteria | 100009 |
| 66 | Ga0163162_10004715 | 3300013306 | Bacteria | 13147 |
| 67 | Ga0163162_10013388 | 3300013306 | Bacteria | 8010 |
| 68 | Ga0157372_10000001 | 3300013307 | Bacteria | 791349 |
| 69 | Ga0157372_10000730 | 3300013307 | Bacteria | 35818 |
| 70 | Ga0157372_10002042 | 3300013307 | Bacteria | 21955 |
| 71 | Ga0157372_10002233 | 3300013307 | Bacteria | 21015 |
| 72 | Ga0157372_10035037 | 3300013307 | Bacteria | 5523 |
| 73 | Ga0157375_10023116 | 3300013308 | Bacteria | 5731 |
| 74 | Ga0157375_10048775 | 3300013308 | Bacteria | 4144 |
| 75 | Ga0163161_10000908 | 3300017792 | Bacteria | 22914 |
| 76 | Ga0209437_100017 | 3300025233 | Bacteria | 694471 |
| 77 | Ga0209026_1001037 | 3300025250 | Bacteria | 13605 |
| 78 | Ga0209026_1003703 | 3300025250 | Bacteria | 4885 |
| 79 | Ga0209455_1005284 | 3300025272 | Bacteria | 4026 |
| 80 | Ga0207642_10018952 | 3300025899 | Bacteria | 2653 |
| 81 | Ga0207647_10000665 | 3300025904 | Bacteria | 26867 |
| 82 | Ga0207647_10003255 | 3300025904 | Bacteria | 12193 |
| 83 | Ga0207645_10000131 | 3300025907 | Bacteria | 56813 |
| 84 | Ga0207695_10000916 | 3300025913 | Bacteria | 52837 |
| 85 | Ga0207695_10011968 | 3300025913 | Bacteria | 10442 |
| 86 | Ga0207695_10038997 | 3300025913 | Bacteria | 5109 |
| 87 | Ga0207671_10001653 | 3300025914 | Bacteria | 25337 |
| 88 | Ga0207671_10005774 | 3300025914 | Bacteria | 11271 |
| 89 | Ga0207671_10006081 | 3300025914 | Bacteria | 10868 |
| 90 | Ga0207671_10010447 | 3300025914 | Bacteria | 7659 |
| 91 | Ga0207660_10117108 | 3300025917 | Bacteria | 2013 |
| 92 | Ga0207657_10122012 | 3300025919 | Bacteria | 2143 |
| 93 | Ga0207644_10033077 | 3300025931 | Bacteria | 3611 |
| 94 | Ga0207706_10000126 | 3300025933 | Bacteria | 82630 |
| 95 | Ga0207704_10000109 | 3300025938 | Bacteria | 45314 |
| 96 | Ga0207667_10005980 | 3300025949 | Bacteria | 14801 |
| 97 | Ga0207667_10013436 | 3300025949 | Bacteria | 9369 |
| 98 | Ga0207667_10030884 | 3300025949 | Bacteria | 5790 |
| 99 | Ga0207667_10050620 | 3300025949 | Bacteria | 4382 |
| 100 | Ga0207667_10196955 | 3300025949 | Bacteria | 2067 |
| 101 | Ga0207639_10039099 | 3300026041 | Bacteria | 3533 |
| 102 | Ga0207648_10000155 | 3300026089 | Bacteria | 69524 |
| 103 | Ga0207674_10134812 | 3300026116 | Bacteria | 2431 |
| 104 | Ga0207683_10014449 | 3300026121 | Bacteria | 6723 |
| 105 | Ga0268266_10000052 | 3300028379 | Bacteria | 296230 |
| 106 | Ga0307515_10000927 | 3300028794 | Bacteria | 67260 |
| 107 | Ga0307515_10001771 | 3300028794 | Bacteria | 48123 |
| 108 | Ga0307515_10058560 | 3300028794 | Bacteria | 5546 |
| 109 | Ga0307412_10072323 | 3300031911 | Bacteria | 2356 |
| 110 | Ga0307414_10025423 | 3300032004 | Bacteria | 3793 |
| 111 | Ga0307414_10030391 | 3300032004 | Bacteria | 3528 |
| 112 | Ga0307414_10053776 | 3300032004 | Bacteria | 2810 |
| 113 | Ga0307510_10005874 | 3300033180 | Bacteria | 14639 |
| 114 | Ga0395899_0000435 | 3300037312 | Bacteria | 47985 |
| 115 | Ga0395899_0007851 | 3300037312 | Bacteria | 8222 |
| 116 | Ga0395900_0000014 | 3300037418 | Bacteria | 386513 |
| 117 | Ga0395900_0000873 | 3300037418 | Bacteria | 39536 |
| 118 | Ga0395900_0022815 | 3300037418 | Bacteria | 6404 |
| 119 | Ga0395905_0000037 | 3300037471 | Bacteria | 261808 |
| 120 | Ga0395905_0000516 | 3300037471 | Bacteria | 52868 |
| 121 | Ga0395901_0000166 | 3300038443 | Bacteria | 86352 |
| 122 | Ga0436361_0539750 | 3300039447 | Bacteria | 15869 |
| 123 | Ga0466966_0004998 | 3300044684 | Bacteria | 8718 |
| 124 | Ga0466961_0039589 | 3300044693 | Bacteria | 3022 |
| 125 | Ga0495650_0000003 | 3300046471 | Bacteria | 900730 |
| 126 | Ga0495585_0000079 | 3300046492 | Bacteria | 100159 |
| 127 | Ga0495583_0020104 | 3300046506 | Bacteria | 3468 |
| 128 | Ga0495583_0071214 | 3300046506 | Bacteria | 1528 |
| 129 | Ga0495606_0000163 | 3300046507 | Bacteria | 117268 |
| 130 | Ga0495606_0006092 | 3300046507 | Bacteria | 11260 |
| 131 | Ga0495610_0001980 | 3300046512 | Bacteria | 17490 |
| 132 | Ga0495616_0011968 | 3300046513 | Bacteria | 4940 |
| 133 | Ga0495648_0016561 | 3300046524 | Bacteria | 5309 |
| 134 | Ga0495648_0035894 | 3300046524 | Bacteria | 3208 |
| 135 | Ga0495652_0089795 | 3300046529 | Bacteria | 2515 |
| 136 | Ga0495654_0039666 | 3300046530 | Bacteria | 2350 |
| 137 | Ga0495609_0011980 | 3300046538 | Bacteria | 4118 |
| 138 | Ga0495633_0000056 | 3300046558 | Bacteria | 149334 |
| 139 | Ga0495633_0031164 | 3300046558 | Bacteria | 2587 |
| 140 | Ga0495668_0000021 | 3300046616 | Bacteria | 381308 |
| 141 | Ga0495625_0000159 | 3300046660 | Bacteria | 104355 |
| 142 | Ga0495625_0000358 | 3300046660 | Bacteria | 69690 |
| 143 | Ga0495625_0001186 | 3300046660 | Bacteria | 33408 |
| 144 | Ga0495661_0001324 | 3300046665 | Bacteria | 21027 |
| 145 | Ga0495661_0006038 | 3300046665 | Bacteria | 8538 |
| 146 | Ga0495658_0046585 | 3300046683 | Bacteria | 2438 |
| 147 | Ga0495649_0000003 | 3300046694 | Bacteria | 880817 |
| 148 | Ga0495687_001555 | 3300047443 | Bacteria | 20864 |
| 149 | Ga0495687_012455 | 3300047443 | Bacteria | 4496 |
| 150 | Ga0495686_0000160 | 3300047472 | Bacteria | 128437 |
| 151 | Ga0495686_0006293 | 3300047472 | Bacteria | 9128 |
| 152 | Ga0495686_0071954 | 3300047472 | Bacteria | 2127 |
| 153 | Ga0495678_013610 | 3300049459 | Bacteria | 3812 |
| 154 | Ga0501033_0119630 | 3300049570 | Bacteria | 1912 |
| 155 | nmdc:mga0k408_1056_c1 | 3300050493 | Bacteria | 15128 |
| 156 | nmdc:mga0k408_111_c1 | 3300050493 | Bacteria | 39614 |
| 157 | nmdc:mga0k408_3605_c1 | 3300050493 | Bacteria | 8188 |
| 158 | Ga0500618_000003 | 3300053125 | Bacteria | 338706 |
| 159 | Ga0500622_0001498 | 3300053156 | Bacteria | 18574 |
| 160 | Ga0500624_000508 | 3300053157 | Bacteria | 11330 |
| 161 | 2599478659 | 2599185184 | Bacteria | 6430550 |
| 162 | 2739304009 | 2738543023 | Bacteria | 6767879 |
| 163 | 2852623672 | 2852623160 | Bacteria | 4376875 |
| 164 | 2852627341 | 2852627209 | Bacteria | 5896285 |
| 165 | 2884937424 | 2884933994 | Bacteria | 4535041 |
| 166 | 2919187374 | 2919186247 | Bacteria | 6244071 |
| 167 | 2919441327 | 2919437846 | Bacteria | 6199444 |
| 168 | 2928080285 | 2928078545 | Bacteria | 6534839 |
| 169 | 2928149542 | 2928147474 | Bacteria | 6512076 |
| 170 | 2932083372 | 2932082852 | Bacteria | 6563563 |
| 171 | 2939665359 | 2939664404 | Bacteria | 6364494 |
| 172 | Ga0307507_10000064 | |||
| 173 | JGI24737J22298_10001721 | |||
| 174 | JGI24737J22298_10002797 | |||
| 175 | JGI24735J21928_10000002 | |||
| 176 | JGI24735J21928_10008015 | |||
| 177 | JGI25162J39368_1000024 | |||
| 178 | rootH2_10002858 | |||
| 179 | rootH2_10035181 | |||
| 180 | rootH2_10178236 | |||
| 181 | rootH1_10128484 | |||
| 182 | Ga0055531_10000491 | |||
| 183 | Ga0058862_12743218 | |||
| 184 | Ga0065714_10003176 | |||
| 185 | Ga0065714_10010197 | |||
| 186 | Ga0070658_10076573 | |||
| 187 | Ga0070676_10002156 | |||
| 188 | Ga0070680_100004089 | |||
| 189 | Ga0070660_100087973 | |||
| 190 | Ga0070671_100052758 | |||
| 191 | Ga0070673_100006796 | |||
| 192 | Ga0070678_100236413 | |||
| 193 | Ga0070662_100002169 | |||
| 194 | Ga0070681_10018151 | |||
| 195 | Ga0070679_100014017 | |||
| 196 | Ga0068853_100014314 | |||
| 197 | Ga0070665_100000003 | |||
| 198 | Ga0068855_100008317 | |||
| 199 | Ga0068855_100017455 | |||
| 200 | Ga0068855_100061815 | |||
| 201 | Ga0068857_100014551 | |||
| 202 | Ga0068856_100026340 | |||
| 203 | Ga0068856_100111624 | |||
| 204 | Ga0068852_100000264 | |||
| 205 | Ga0068866_10055727 | |||
| 206 | Ga0075366_10001161 | |||
| 207 | Ga0097621_100000033 | |||
| 208 | Ga0068871_100000020 | |||
| 209 | Ga0068865_100000138 | |||
| 210 | Ga0105240_10001584 | |||
| 211 | Ga0105240_10004790 | |||
| 212 | Ga0105240_10106970 | |||
| 213 | Ga0105240_10116478 | |||
| 214 | Ga0105241_10004109 | |||
| 215 | Ga0105241_10005868 | |||
| 216 | Ga0105241_10025369 | |||
| 217 | Ga0105241_10168718 | |||
| 218 | Ga0105237_10000803 | |||
| 219 | Ga0105237_10001449 | |||
| 220 | Ga0105237_10004465 | |||
| 221 | Ga0105238_10002195 | |||
| 222 | Ga0105239_10000005 | |||
| 223 | Ga0105239_10000013 | |||
| 224 | Ga0105239_10001207 | |||
| 225 | Ga0105239_10005491 | |||
| 226 | Ga0105239_10016008 | |||
| 227 | Ga0157373_10000069 | |||
| 228 | Ga0157373_10003455 | |||
| 229 | Ga0157371_10006726 | |||
| 230 | Ga0157371_10007674 | |||
| 231 | Ga0157369_10004541 | |||
| 232 | Ga0157369_10101113 | |||
| 233 | Ga0157374_10000349 | |||
| 234 | Ga0157374_10005211 | |||
| 235 | Ga0157378_10145743 | |||
| 236 | Ga0163162_10000066 | |||
| 237 | Ga0163162_10004715 | |||
| 238 | Ga0163162_10013388 | |||
| 239 | Ga0157372_10000001 | |||
| 240 | Ga0157372_10000730 | |||
| 241 | Ga0157372_10002042 | |||
| 242 | Ga0157372_10002233 | |||
| 243 | Ga0157372_10035037 | |||
| 244 | Ga0157375_10023116 | |||
| 245 | Ga0157375_10048775 | |||
| 246 | Ga0163161_10000908 | |||
| 247 | Ga0209437_100017 | |||
| 248 | Ga0209026_1001037 | |||
| 249 | Ga0209026_1003703 | |||
| 250 | Ga0209455_1005284 | |||
| 251 | Ga0207642_10018952 | |||
| 252 | Ga0207647_10000665 | |||
| 253 | Ga0207647_10003255 | |||
| 254 | Ga0207645_10000131 | |||
| 255 | Ga0207695_10000916 | |||
| 256 | Ga0207695_10011968 | |||
| 257 | Ga0207695_10038997 | |||
| 258 | Ga0207671_10001653 | |||
| 259 | Ga0207671_10005774 | |||
| 260 | Ga0207671_10006081 | |||
| 261 | Ga0207671_10010447 | |||
| 262 | Ga0207660_10117108 | |||
| 263 | Ga0207657_10122012 | |||
| 264 | Ga0207644_10033077 | |||
| 265 | Ga0207706_10000126 | |||
| 266 | Ga0207704_10000109 | |||
| 267 | Ga0207667_10005980 | |||
| 268 | Ga0207667_10013436 | |||
| 269 | Ga0207667_10030884 | |||
| 270 | Ga0207667_10050620 | |||
| 271 | Ga0207667_10196955 | |||
| 272 | Ga0207639_10039099 | |||
| 273 | Ga0207648_10000155 | |||
| 274 | Ga0207674_10134812 | |||
| 275 | Ga0207683_10014449 | |||
| 276 | Ga0268266_10000052 | |||
| 277 | Ga0307515_10000927 | |||
| 278 | Ga0307515_10001771 | |||
| 279 | Ga0307515_10058560 | |||
| 280 | Ga0307412_10072323 | |||
| 281 | Ga0307414_10025423 | |||
| 282 | Ga0307414_10030391 | |||
| 283 | Ga0307414_10053776 | |||
| 284 | Ga0307510_10005874 | |||
| 285 | Ga0395899_0000435 | |||
| 286 | Ga0395899_0007851 | |||
| 287 | Ga0395900_0000014 | |||
| 288 | Ga0395900_0000873 | |||
| 289 | Ga0395900_0022815 | |||
| 290 | Ga0395905_0000037 | |||
| 291 | Ga0395905_0000516 | |||
| 292 | Ga0395901_0000166 | |||
| 293 | Ga0436361_0539750 | |||
| 294 | Ga0466966_0004998 | |||
| 295 | Ga0466961_0039589 | |||
| 296 | Ga0495650_0000003 | |||
| 297 | Ga0495585_0000079 | |||
| 298 | Ga0495583_0020104 | |||
| 299 | Ga0495583_0071214 | |||
| 300 | Ga0495606_0000163 | |||
| 301 | Ga0495606_0006092 | |||
| 302 | Ga0495610_0001980 | |||
| 303 | Ga0495616_0011968 | |||
| 304 | Ga0495648_0016561 | |||
| 305 | Ga0495648_0035894 | |||
| 306 | Ga0495652_0089795 | |||
| 307 | Ga0495654_0039666 | |||
| 308 | Ga0495609_0011980 | |||
| 309 | Ga0495633_0000056 | |||
| 310 | Ga0495633_0031164 | |||
| 311 | Ga0495668_0000021 | |||
| 312 | Ga0495625_0000159 | |||
| 313 | Ga0495625_0000358 | |||
| 314 | Ga0495625_0001186 | |||
| 315 | Ga0495661_0001324 | |||
| 316 | Ga0495661_0006038 | |||
| 317 | Ga0495658_0046585 | |||
| 318 | Ga0495649_0000003 | |||
| 319 | Ga0495687_001555 | |||
| 320 | Ga0495687_012455 | |||
| 321 | Ga0495686_0000160 | |||
| 322 | Ga0495686_0006293 | |||
| 323 | Ga0495686_0071954 | |||
| 324 | Ga0495678_013610 | |||
| 325 | Ga0501033_0119630 | |||
| 326 | nmdc:mga0k408_1056_c1 | |||
| 327 | nmdc:mga0k408_111_c1 | |||
| 328 | nmdc:mga0k408_3605_c1 | |||
| 329 | Ga0500618_000003 | |||
| 330 | Ga0500622_0001498 | |||
| 331 | Ga0500624_000508 | |||
| 332 | 2599478659 | |||
| 333 | 2739304009 | |||
| 334 | 2852623672 | |||
| 335 | 2852627341 | |||
| 336 | 2884937424 | |||
| 337 | 2919187374 | |||
| 338 | 2919441327 | |||
| 339 | 2928080285 | |||
| 340 | 2928149542 | |||
| 341 | 2932083372 | |||
| 342 | 2939665359 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 2ejg-assembly1.cif.gz_C | crystal structure of the biotin protein ligase (mutation r48a) and biotin carboxyl carrier protein complex from pyrococcus horikoshii ot3 | 0.9656 | 4 | 78 |
| 2d5d-assembly1.cif.gz_A | structure of biotin carboxyl carrier protein (74val start) from pyrococcus horikoshi ot3 ligand free form ii | 0.9605 | 5 | 78 |
| 1dd2-assembly1.cif.gz_A | biotin carboxyl carrier domain of transcarboxylase (tc 1.3s) | 0.9597 | 5 | 78 |
| 5gu9-assembly1.cif.gz_A | structure of biotin carboxyl carrier protein from pyrococcus horikoshi ot3 (delta n79) a138i mutant | 0.9585 | 5 | 78 |
| 5gua-assembly1.cif.gz_A | structure of biotin carboxyl carrier protein from pyrococcus horikoshi ot3 (delta n79) a138y mutant | 0.9541 | 2 | 78 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_B6TJY4_106_181_2.40.50.100 | Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.992 | 4 | 79 | 2.40.50.100 |
| af_P9WIS7_123_196_2.40.50.100 | Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.992 | 7 | 78 | 2.40.50.100 |
| af_B6TJY4_106_181_2.40.50.100 | Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.9793 | 4 | 79 | 2.40.50.100 |
| af_A4I3X3_25_102_2.40.50.100 | Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.9785 | 4 | 80 | 2.40.50.100 |
| af_A0A1D6KPB2_40_143_2.40.50.100 | Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);RNA polymerase II/Efflux pump adaptor protein, barrel-sandwich hybrid domain | 0.9741 | 3 | 77 | 2.40.50.100 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A3G9M7X5-F1-model_v4 | deleted | 0.9906 | 3 | 77 |
|
| AF-A0A6J4TNW2-F1-model_v4 | Lipoyl-binding domain-containing protein | 0.9863 | 2 | 80 |
GO:0006086
GO:0045254 |
| AF-A0A6N2EAQ1-F1-model_v4 | Lipoyl-binding domain-containing protein | 0.982 | 2 | 80 |
GO:0005737
GO:0016407 GO:0031405 |
| AF-A0A7C2YCB7-F1-model_v4 | Biotin attachment protein | 0.9795 | 2 | 80 |
GO:0005737
GO:0016407 GO:0031405 |
| AF-D8RJG0-F1-model_v4 | Lipoyl-binding domain-containing protein | 0.976 | 2 | 77 |
GO:0006086
GO:0045254 |