F256393

General Info

Members Datasets Scaffolds Average Seq Length
170 115 152 254

Family's Representative Sequence

Representative Sequence 3300005563|Ga0068855_100119462|Ga0068855_1001194622
Length 271
Sequence MSGAEETGRAGRPGPAAGRYAAAFRAINPVAKIAASLLIAVTLALSVDAASALTALVLEVALLPFAGLTWRAFWRRTAPVWFAAPLAGLTAALYGRASGHVYLDWLVVHVTDGSLHLAVITALRVLAIALPAVVLFATVDATALADGLAQRVHLPARFVLGALAALRLVGLMRDDWAALELARRARGVADRGRIRRFAGLAFAIFVLSIRRGSALATAMEARGFGGSGPRTWARPSTFGGREVVLIAIGGLIAATAVAVAVLTEQWAFLGT

Samples

Sample ID Description Type Environment
1 2643221549 Agromyces sp. Root1464 Isolate Unclassified
2 2643221553 Microbacterium sp. Root553 Isolate Unclassified
3 2643221619 Agromyces sp. Root81 Isolate Unclassified
4 2643221649 Leifsonia sp. Root4 Isolate Unclassified
5 2643221724 Microbacterium sp. Root280D1 Isolate Unclassified
6 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
7 2728369380 Microbacterium sp. 1.5R Isolate Rhizosphere
8 2757320536 Microbacterium sp. NFIX05 Isolate Unclassified
9 2844852863 Herbiconiux flava DSM 26474 Isolate Rhizosphere
10 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
11 2919395869 Microbacterium resistens 2980 Isolate Unclassified
12 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
13 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
14 2946033335 Microbacterium sp. W4I4 Isolate Rhizosphere
15 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
16 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
17 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
18 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
19 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
20 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
21 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
22 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
23 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
24 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
25 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
26 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
27 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
28 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
29 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
30 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
31 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
32 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
33 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
34 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
35 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
36 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
37 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
38 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
39 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
40 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
41 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
42 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
43 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
44 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
45 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
67 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
68 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
69 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
70 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
71 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
72 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
73 3300041411 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0409DE14Z080117_6708 Metagenome Rhizosphere
74 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
75 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
76 3300041452 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_4 MetaG Metagenome Rhizoplane
77 3300041462 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_8 MetaG Metagenome Rhizoplane
78 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
79 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
80 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
81 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
82 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
83 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
84 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
85 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
86 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
87 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
88 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
89 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
90 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
91 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
92 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
93 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
94 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
95 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
96 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
97 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
99 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
101 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
102 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
104 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
105 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
106 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
107 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
108 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
109 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
110 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
111 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
112 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
113 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
114 8016254467 Microbacterium sp. SLBN-111 (version 3) Isolate Rhizosphere
115 8056037122 Herbiconiux gentiana CPCC 205716 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.41
Metatranscriptomes 0
Isolates 10.59

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.47
Nodule 0
Rhizoplane 2.35
Rhizosphere 74.71
Stem 0
Stem Tuber 0
Unclassified 16.47

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10008631 3300005327 Bacteria 8192
2 Ga0070658_10010889 3300005327 Bacteria 7291
3 Ga0070658_10207350 3300005327 Bacteria 1655
4 Ga0070660_100059223 3300005339 Bacteria 2970
5 Ga0070660_100583826 3300005339 Bacteria 934
6 Ga0070659_100000890 3300005366 Bacteria 21838
7 Ga0070659_100378569 3300005366 Bacteria 1192
8 Ga0070667_100268365 3300005367 Bacteria 1529
9 Ga0070714_100620116 3300005435 Bacteria 1040
10 Ga0070700_100139998 3300005441 Bacteria 1643
11 Ga0070678_100815909 3300005456 Bacteria 848
12 Ga0070685_10035319 3300005466 Bacteria 2819
13 Ga0068853_100043217 3300005539 Bacteria 3855
14 Ga0068853_100106040 3300005539 Bacteria 2490
15 Ga0070665_100096880 3300005548 Bacteria 2955
16 Ga0070665_100775168 3300005548 Bacteria 972
17 Ga0068855_100000948 3300005563 Bacteria 36113
18 Ga0068855_100005621 3300005563 Bacteria 15293
19 Ga0068855_100084327 3300005563 Bacteria 3679
20 Ga0068855_100119462 3300005563 Bacteria 3018
21 Ga0068857_100000780 3300005577 Bacteria 23766
22 Ga0068856_100049716 3300005614 Bacteria 4132
23 Ga0068856_100052720 3300005614 Bacteria 4012
24 Ga0068852_100005141 3300005616 Bacteria 9325
25 Ga0068852_100006251 3300005616 Bacteria 8593
26 Ga0068851_10000014 3300005834 Bacteria 151675
27 Ga0068870_10081205 3300005840 Bacteria 1793
28 Ga0068858_100000220 3300005842 Bacteria 61714
29 Ga0075367_10010756 3300006178 Bacteria 4818
30 Ga0105240_10001267 3300009093 Bacteria 43724
31 Ga0105240_10027213 3300009093 Bacteria 7490
32 Ga0105245_10011384 3300009098 Bacteria 7749
33 Ga0105245_10358283 3300009098 Bacteria 1447
34 Ga0105241_10000079 3300009174 Bacteria 72213
35 Ga0105248_10000373 3300009177 Bacteria 52186
36 Ga0105248_10290107 3300009177 Bacteria 1842
37 Ga0105248_10687511 3300009177 Bacteria 1154
38 Ga0105237_10000133 3300009545 Bacteria 104324
39 Ga0105237_10343189 3300009545 Bacteria 1498
40 Ga0105238_10057655 3300009551 Bacteria 3894
41 Ga0105239_10032154 3300010375 Bacteria 5766
42 Ga0105239_10143638 3300010375 Bacteria 2660
43 Ga0105239_10193680 3300010375 Bacteria 2276
44 Ga0105239_10429626 3300010375 Bacteria 1497
45 Ga0157370_10030232 3300013104 Bacteria 5309
46 Ga0157380_10076280 3300014326 Bacteria 2728
47 Ga0157380_10182747 3300014326 Bacteria 1844
48 Ga0209148_1001092 3300025254 Bacteria 16393
49 Ga0207656_10000002 3300025321 Bacteria 792178
50 Ga0207655_1015870 3300025728 Bacteria 4156
51 Ga0207705_10000006 3300025909 Bacteria 657147
52 Ga0207705_10002918 3300025909 Bacteria 13065
53 Ga0207705_10132658 3300025909 Bacteria 1854
54 Ga0207705_10166070 3300025909 Bacteria 1660
55 Ga0207654_10000001 3300025911 Bacteria 1816198
56 Ga0207695_10001300 3300025913 Bacteria 42392
57 Ga0207695_10006110 3300025913 Bacteria 15711
58 Ga0207671_10000002 3300025914 Bacteria 1144816
59 Ga0207671_10027275 3300025914 Bacteria 4270
60 Ga0207671_10562675 3300025914 Bacteria 909
61 Ga0207657_10001090 3300025919 Bacteria 28772
62 Ga0207657_10103897 3300025919 Bacteria 2355
63 Ga0207687_10008412 3300025927 Bacteria 6746
64 Ga0207687_10078282 3300025927 Bacteria 2380
65 Ga0207690_10010448 3300025932 Bacteria 5518
66 Ga0207690_10331761 3300025932 Bacteria 1198
67 Ga0207711_10000702 3300025941 Bacteria 33018
68 Ga0207711_10051638 3300025941 Bacteria 3522
69 Ga0207711_10580422 3300025941 Bacteria 1046
70 Ga0207667_10003840 3300025949 Bacteria 18467
71 Ga0207667_10010319 3300025949 Bacteria 10926
72 Ga0207667_10031662 3300025949 Bacteria 5707
73 Ga0207667_10035261 3300025949 Bacteria 5367
74 Ga0207667_10120801 3300025949 Bacteria 2700
75 Ga0207667_10124311 3300025949 Bacteria 2658
76 Ga0207667_10734166 3300025949 Bacteria 988
77 Ga0207668_10205962 3300025972 Bacteria 1570
78 Ga0207658_10046075 3300025986 Bacteria 3182
79 Ga0207703_10000031 3300026035 Bacteria 196940
80 Ga0207639_10025505 3300026041 Bacteria 4286
81 Ga0207678_10211178 3300026067 Bacteria 1660
82 Ga0207702_10148148 3300026078 Bacteria 2132
83 Ga0207641_10925460 3300026088 Bacteria 866
84 Ga0207674_10001321 3300026116 Bacteria 32250
85 Ga0207674_10248325 3300026116 Bacteria 1726
86 Ga0207698_10000587 3300026142 Bacteria 21197
87 Ga0207698_10001237 3300026142 Bacteria 14916
88 Ga0268265_10198895 3300028380 Bacteria 1737
89 Ga0307515_10407171 3300028794 Bacteria 984
90 Ga0307513_10272487 3300031456 Bacteria 1475
91 Ga0307408_100559061 3300031548 Bacteria 1011
92 Ga0307514_10094997 3300031649 Bacteria 2159
93 Ga0307406_10000812 3300031901 Bacteria 17544
94 Ga0307409_100322178 3300031995 Bacteria 1447
95 Ga0395901_0060879 3300038443 Bacteria 3929
96 Ga0439466_0078299 3300041411 Bacteria 1045
97 Ga0439465_0025593 3300041413 Bacteria 1863
98 Ga0451791_1609571 3300041451 Bacteria 1299
99 Ga0451793_0867012 3300041452 Bacteria 1898
100 Ga0451806_160083 3300041462 Bacteria 1067
101 Ga0466965_0000011 3300044683 Bacteria 107319
102 Ga0495650_0003430 3300046471 Bacteria 11566
103 Ga0495656_0248037 3300046615 Bacteria 899
104 Ga0495670_0233358 3300046691 Bacteria 979
105 Ga0495671_0226778 3300046692 Bacteria 904
106 Ga0495672_0004033 3300047320 Bacteria 12274
107 Ga0495686_0154076 3300047472 Bacteria 1347
108 Ga0496113_0509343 3300048916 Bacteria 966
109 Ga0496117_0000014 3300048920 Bacteria 584427
110 Ga0496117_0000346 3300048920 Bacteria 81937
111 Ga0496118_0026000 3300048921 Bacteria 5001
112 Ga0496119_0000665 3300048922 Bacteria 46063
113 Ga0496119_0000973 3300048922 Bacteria 36780
114 Ga0496120_0001067 3300048923 Bacteria 36237
115 Ga0496120_0011099 3300048923 Bacteria 6219
116 Ga0496120_0011875 3300048923 Bacteria 5960
117 Ga0496120_0016047 3300048923 Bacteria 4910
118 Ga0496120_0028264 3300048923 Bacteria 3438
119 Ga0496121_0000132 3300048924 Bacteria 167578
120 Ga0496122_0011750 3300048925 Bacteria 8822
121 Ga0496122_0028590 3300048925 Bacteria 4724
122 Ga0496123_0002519 3300048926 Bacteria 22507
123 Ga0496123_0065992 3300048926 Bacteria 2296
124 Ga0496124_0003514 3300048927 Bacteria 19087
125 Ga0496125_0043443 3300048928 Bacteria 3814
126 Ga0501032_0007533 3300049569 Bacteria 7953
127 Ga0501033_0119970 3300049570 Bacteria 1909
128 Ga0501034_0005779 3300049571 Bacteria 13454
129 Ga0501034_0023432 3300049571 Bacteria 6290
130 Ga0501034_0068811 3300049571 Bacteria 3551
131 Ga0501034_0117060 3300049571 Bacteria 2652
132 Ga0501034_0176356 3300049571 Bacteria 2103
133 Ga0501034_0179076 3300049571 Bacteria 2085
134 Ga0501036_0073729 3300049572 Bacteria 2886
135 Ga0501037_0108598 3300049573 Bacteria 1999
136 Ga0501038_0025252 3300049574 Bacteria 5297
137 Ga0501038_0086343 3300049574 Bacteria 2636
138 Ga0501038_0188177 3300049574 Bacteria 1662
139 Ga0501039_0127193 3300049575 Bacteria 1999
140 Ga0501047_0313586 3300049581 Bacteria 1409
141 Ga0501070_0002232 3300049586 Bacteria 17020
142 Ga0501073_0062020 3300049589 Bacteria 2608
143 Ga0501044_0037026 3300049823 Bacteria 5102
144 nmdc:mga0yw44_238742_c1 3300050492 Bacteria 1207
145 nmdc:mga07m45_289155_c1 3300050496 Bacteria 953
146 Ga0500651_0000743 3300053093 Bacteria 15898
147 Ga0500568_0001028 3300053139 Bacteria 19099
148 Ga0500568_0006247 3300053139 Bacteria 6014
149 Ga0500573_0044339 3300053140 Bacteria 2565
150 Ga0500590_000733 3300053148 Bacteria 11965
151 Ga0500616_0000078 3300053153 Bacteria 202009
152 Ga0500620_000085 3300053155 Bacteria 18027

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300048924 Ga0496121_0000132 Ga0496121_0000132_15498_16274 196
2 3300049571 Ga0501034_0005779 Ga0501034_0005779_8481_9278 207
3 3300009177 Ga0105248_10000373 Ga0105248_1000037356 212
4 3300009545 Ga0105237_10343189 Ga0105237_103431892 212
5 3300025914 Ga0207671_10027275 Ga0207671_100272757 212
6 3300025941 Ga0207711_10000702 Ga0207711_1000070219 212
7 3300028794 Ga0307515_10407171 Ga0307515_104071712 214
8 3300046471 Ga0495650_0003430 Ga0495650_0003430_2225_3016 214
9 3300048923 Ga0496120_0028264 Ga0496120_0028264_2231_3037 216
10 3300053140 Ga0500573_0044339 Ga0500573_0044339_555_1340 219
11 3300005327 Ga0070658_10207350 Ga0070658_102073501 220
12 3300025909 Ga0207705_10166070 Ga0207705_101660702 220
13 3300005563 Ga0068855_100005621 Ga0068855_1000056213 221
14 3300025949 Ga0207667_10031662 Ga0207667_100316622 221
15 3300031548 Ga0307408_100559061 Ga0307408_1005590612 221
16 3300048925 Ga0496122_0028590 Ga0496122_0028590_1736_2515 221
17 3300053093 Ga0500651_0000743 Ga0500651_0000743_8175_8936 221
18 3300009093 Ga0105240_10027213 Ga0105240_100272139 222
19 3300010375 Ga0105239_10143638 Ga0105239_101436382 222
20 3300025913 Ga0207695_10001300 Ga0207695_1000130023 222
21 3300044683 Ga0466965_0000011 Ga0466965_0000011_60950_61729 223
22 3300049569 Ga0501032_0007533 Ga0501032_0007533_5451_6230 223
23 3300049571 Ga0501034_0176356 Ga0501034_0176356_1279_2058 223
24 3300049573 Ga0501037_0108598 Ga0501037_0108598_755_1534 223
25 3300049574 Ga0501038_0188177 Ga0501038_0188177_265_1044 223
26 3300049575 Ga0501039_0127193 Ga0501039_0127193_763_1542 223
27 3300049581 Ga0501047_0313586 Ga0501047_0313586_166_945 223
28 3300049823 Ga0501044_0037026 Ga0501044_0037026_803_1582 223
29 3300005577 Ga0068857_100000780 Ga0068857_1000007809 224
30 3300009551 Ga0105238_10057655 Ga0105238_100576553 224
31 3300010375 Ga0105239_10193680 Ga0105239_101936802 224
32 3300026116 Ga0207674_10001321 Ga0207674_1000132136 224
33 3300049571 Ga0501034_0117060 Ga0501034_0117060_1595_2338 224
34 3300053139 Ga0500568_0001028 Ga0500568_0001028_6581_7387 224
35 3300005616 Ga0068852_100006251 Ga0068852_1000062516 225
36 3300005834 Ga0068851_10000014 Ga0068851_1000001465 225
37 3300009545 Ga0105237_10000133 Ga0105237_1000013322 225
38 3300010375 Ga0105239_10032154 Ga0105239_100321543 225
39 3300025321 Ga0207656_10000002 Ga0207656_10000002331 225
40 3300025909 Ga0207705_10002918 Ga0207705_1000291812 225
41 3300025914 Ga0207671_10000002 Ga0207671_10000002625 225
42 3300026142 Ga0207698_10001237 Ga0207698_1000123714 225
43 3300031649 Ga0307514_10094997 Ga0307514_100949972 225
44 3300048922 Ga0496119_0000973 Ga0496119_0000973_27093_27872 225
45 3300048923 Ga0496120_0011099 Ga0496120_0011099_2237_3016 225
46 3300053155 Ga0500620_000085 Ga0500620_000085_7616_8371 225
47 3300049589 Ga0501073_0062020 Ga0501073_0062020_85_828 226
48 3300047472 Ga0495686_0154076 Ga0495686_0154076_44_769 227
49 3300026088 Ga0207641_10925460 Ga0207641_109254601 228
50 3300049570 Ga0501033_0119970 Ga0501033_0119970_869_1648 232
51 3300049572 Ga0501036_0073729 Ga0501036_0073729_1744_2523 232
52 3300050492 nmdc:mga0yw44_238742_c1 nmdc:mga0yw44_238742_c1_136_876 232
53 3300005327 Ga0070658_10008631 Ga0070658_100086313 233
54 3300005327 Ga0070658_10010889 Ga0070658_100108896 233
55 3300005339 Ga0070660_100059223 Ga0070660_1000592232 233
56 3300005339 Ga0070660_100583826 Ga0070660_1005838261 233
57 3300005366 Ga0070659_100000890 Ga0070659_10000089019 233
58 3300005366 Ga0070659_100378569 Ga0070659_1003785692 233
59 3300005367 Ga0070667_100268365 Ga0070667_1002683652 233
60 3300005435 Ga0070714_100620116 Ga0070714_1006201161 233
61 3300005441 Ga0070700_100139998 Ga0070700_1001399982 233
62 3300005456 Ga0070678_100815909 Ga0070678_1008159091 233
63 3300005466 Ga0070685_10035319 Ga0070685_100353192 233
64 3300005539 Ga0068853_100043217 Ga0068853_1000432171 233
65 3300005539 Ga0068853_100106040 Ga0068853_1001060402 233
66 3300005548 Ga0070665_100096880 Ga0070665_1000968802 233
67 3300005548 Ga0070665_100775168 Ga0070665_1007751681 233
68 3300005563 Ga0068855_100000948 Ga0068855_10000094840 233
69 3300005563 Ga0068855_100084327 Ga0068855_1000843273 233
70 3300005563 Ga0068855_100119462 Ga0068855_1001194622 233
71 3300005614 Ga0068856_100049716 Ga0068856_1000497163 233
72 3300005614 Ga0068856_100052720 Ga0068856_1000527206 233
73 3300005616 Ga0068852_100005141 Ga0068852_10000514110 233
74 3300005840 Ga0068870_10081205 Ga0068870_100812051 233
75 3300005842 Ga0068858_100000220 Ga0068858_10000022037 233
76 3300006178 Ga0075367_10010756 Ga0075367_100107564 233
77 3300009093 Ga0105240_10001267 Ga0105240_1000126739 233
78 3300009098 Ga0105245_10011384 Ga0105245_100113846 233
79 3300009098 Ga0105245_10358283 Ga0105245_103582832 233
80 3300009174 Ga0105241_10000079 Ga0105241_1000007942 233
81 3300009177 Ga0105248_10290107 Ga0105248_102901072 233
82 3300009177 Ga0105248_10687511 Ga0105248_106875112 233
83 3300010375 Ga0105239_10429626 Ga0105239_104296262 233
84 3300013104 Ga0157370_10030232 Ga0157370_100302326 233
85 3300014326 Ga0157380_10076280 Ga0157380_100762802 233
86 3300014326 Ga0157380_10182747 Ga0157380_101827472 233
87 3300025254 Ga0209148_1001092 Ga0209148_100109215 233
88 3300025728 Ga0207655_1015870 Ga0207655_10158703 233
89 3300025909 Ga0207705_10000006 Ga0207705_100000068 233
90 3300025909 Ga0207705_10132658 Ga0207705_101326582 233
91 3300025911 Ga0207654_10000001 Ga0207654_100000011531 233
92 3300025913 Ga0207695_10006110 Ga0207695_1000611015 233
93 3300025914 Ga0207671_10562675 Ga0207671_105626751 233
94 3300025919 Ga0207657_10001090 Ga0207657_100010902 233
95 3300025919 Ga0207657_10103897 Ga0207657_101038972 233
96 3300025927 Ga0207687_10008412 Ga0207687_100084125 233
97 3300025927 Ga0207687_10078282 Ga0207687_100782823 233
98 3300025932 Ga0207690_10010448 Ga0207690_100104482 233
99 3300025932 Ga0207690_10331761 Ga0207690_103317611 233
100 3300025941 Ga0207711_10051638 Ga0207711_100516386 233
101 3300025941 Ga0207711_10580422 Ga0207711_105804222 233
102 3300025949 Ga0207667_10003840 Ga0207667_1000384021 233
103 3300025949 Ga0207667_10010319 Ga0207667_100103197 233
104 3300025949 Ga0207667_10035261 Ga0207667_100352612 233
105 3300025949 Ga0207667_10120801 Ga0207667_101208013 233
106 3300025949 Ga0207667_10124311 Ga0207667_101243112 233
107 3300025949 Ga0207667_10734166 Ga0207667_107341661 233
108 3300025972 Ga0207668_10205962 Ga0207668_102059622 233
109 3300025986 Ga0207658_10046075 Ga0207658_100460754 233
110 3300026035 Ga0207703_10000031 Ga0207703_10000031211 233
111 3300026041 Ga0207639_10025505 Ga0207639_100255052 233
112 3300026067 Ga0207678_10211178 Ga0207678_102111783 233
113 3300026078 Ga0207702_10148148 Ga0207702_101481482 233
114 3300026116 Ga0207674_10248325 Ga0207674_102483252 233
115 3300026142 Ga0207698_10000587 Ga0207698_100005875 233
116 3300028380 Ga0268265_10198895 Ga0268265_101988952 233
117 3300031456 Ga0307513_10272487 Ga0307513_102724872 233
118 3300031901 Ga0307406_10000812 Ga0307406_100008121 233
119 3300031995 Ga0307409_100322178 Ga0307409_1003221782 233
120 3300038443 Ga0395901_0060879 Ga0395901_0060879_2514_3293 233
121 3300041411 Ga0439466_0078299 Ga0439466_0078299_240_1019 233
122 3300041413 Ga0439465_0025593 Ga0439465_0025593_705_1484 233
123 3300041451 Ga0451791_1609571 Ga0451791_1609571_411_1184 233
124 3300041452 Ga0451793_0867012 Ga0451793_0867012_393_1175 233
125 3300041462 Ga0451806_160083 Ga0451806_160083_77_859 233
126 3300046615 Ga0495656_0248037 Ga0495656_0248037_36_815 233
127 3300046691 Ga0495670_0233358 Ga0495670_0233358_30_809 233
128 3300046692 Ga0495671_0226778 Ga0495671_0226778_42_830 233
129 3300047320 Ga0495672_0004033 Ga0495672_0004033_5236_5982 233
130 3300048916 Ga0496113_0509343 Ga0496113_0509343_26_805 233
131 3300048920 Ga0496117_0000014 Ga0496117_0000014_511480_512268 233
132 3300048920 Ga0496117_0000346 Ga0496117_0000346_71383_72165 233
133 3300048921 Ga0496118_0026000 Ga0496118_0026000_607_1404 233
134 3300048922 Ga0496119_0000665 Ga0496119_0000665_35523_36311 233
135 3300048923 Ga0496120_0001067 Ga0496120_0001067_27941_28729 233
136 3300048923 Ga0496120_0011875 Ga0496120_0011875_4611_5399 233
137 3300048923 Ga0496120_0016047 Ga0496120_0016047_2411_3172 233
138 3300048925 Ga0496122_0011750 Ga0496122_0011750_4365_5147 233
139 3300048926 Ga0496123_0002519 Ga0496123_0002519_6279_7067 233
140 3300048926 Ga0496123_0065992 Ga0496123_0065992_967_1749 233
141 3300048927 Ga0496124_0003514 Ga0496124_0003514_15379_16167 233
142 3300048928 Ga0496125_0043443 Ga0496125_0043443_198_986 233
143 3300049571 Ga0501034_0023432 Ga0501034_0023432_2350_3090 233
144 3300049571 Ga0501034_0068811 Ga0501034_0068811_1746_2558 233
145 3300049571 Ga0501034_0179076 Ga0501034_0179076_768_1508 233
146 3300049574 Ga0501038_0025252 Ga0501038_0025252_4467_5231 233
147 3300049574 Ga0501038_0086343 Ga0501038_0086343_307_1119 233
148 3300049586 Ga0501070_0002232 Ga0501070_0002232_14405_15199 233
149 3300050496 nmdc:mga07m45_289155_c1 nmdc:mga07m45_289155_c1_46_837 233
150 3300053139 Ga0500568_0006247 Ga0500568_0006247_940_1683 233
151 3300053148 Ga0500590_000733 Ga0500590_000733_7929_8699 233
152 3300053153 Ga0500616_0000078 Ga0500616_0000078_52718_53500 233
153 iso_pu_bacteria 2643221549 2643767934 233
154 iso_pu_bacteria 2643221553 2643784767 233
155 iso_pu_bacteria 2643221619 2644111326 233
156 iso_pu_bacteria 2643221649 2644280666 233
157 iso_pu_bacteria 2643221724 2644681542 233
158 iso_pu_bacteria 2721755702 2723641809 233
159 iso_pu_bacteria 2728369380 2730231054 233
160 iso_pu_bacteria 2757320536 2758225630 233
161 iso_pu_bacteria 2844852863 2844854796 233
162 iso_pu_bacteria 2857723135 2857726391 233
163 iso_pu_bacteria 2919395869 2919397339 233
164 iso_pu_bacteria 2919443155 2919446445 233
165 iso_pu_bacteria 2935409751 2935411217 233
166 iso_pu_bacteria 2946033335 2946036013 233
167 iso_pu_bacteria 2946041624 2946041634 233
168 iso_pu_bacteria 2946080515 2946083661 233
169 iso_pu_bacteria 8016254467 8016256137 233
170 iso_pu_bacteria 8056037122 8056038934 233

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02361

CbiQ

Cobalt transport protein

22

232

0.84

Structural Annotation

Top 5 Hits

ID Description Score Start End
8bmq-assembly1.cif.gz_D cryo-em structure of the folate-specific ecf transporter complex in msp2n2 lipid nanodiscs bound to amp-pnp 0.5771 3 219
8bmq-assembly1.cif.gz_D cryo-em structure of the folate-specific ecf transporter complex in msp2n2 lipid nanodiscs bound to amp-pnp 0.5399 3 219
5x3x-assembly2.cif.gz_q 2.8a resolution structure of a cobalt energy-coupling factor transporter-cbimqo 0.5239 3 218
4huq-assembly1.cif.gz_T crystal structure of a transporter 0.5034 3 219
5x41-assembly1.cif.gz_Q 3.5a resolution structure of a cobalt energy-coupling factor transporter using lcp method-cbimqo 0.5034 3 223
ID Description Score Start End Superfamily
af_Q9VUW4_2_152_3.30.540.10 Alpha Beta;2-Layer Sandwich;Fructose-1,6-Bisphosphatase; Chain A, domain 1;Fructose-1,6-Bisphosphatase, subunit A, domain 1 0.3816 29 89 3.30.540.10
af_Q2FVL3_18_236_1.10.3720.10 Mainly Alpha;Orthogonal Bundle;MetI-like fold;MetI-like 0.359 6 187 1.10.3720.10
5oy0000 Mainly Alpha;Up-down Bundle;Photosystem 1 Reaction Centre Subunit Xi; Chain: L;;Photosystem I PsaL, reaction centre subunit XI 0.355 12 114 1.20.1240.10
af_A4I1N6_7_128_1.20.140.150 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3; 0.3456 12 109 1.20.140.150
af_Q3TZX3_129_318_1.50.40.10 Mainly Alpha;Alpha/alpha barrel;Mitochondrial carrier fold;Mitochondrial carrier domain 0.3427 23 180 1.50.40.10
ID Description Score Start End GO Terms
AF-A0A3E2CGJ9-F1-model_v4 deleted 0.8886 2 95
AF-A0A3E2CJ78-F1-model_v4 deleted 0.8803 9 125
AF-A0A3E1J0P9-F1-model_v4 ABC transporter ATP-binding protein 0.7676 9 139 GO:0005524
GO:0016887
GO:0042626
GO:0043190
AF-A0A251XF55-F1-model_v4 Energy-coupling factor transporter transmembrane protein EcfT 0.7281 3 202 GO:0005886
AF-A0A3D5CIQ4-F1-model_v4 ABC transporter 0.6992 11 159 GO:0005886

Feature Viewer

pLDDT pTM Quality
77.89 0.67 Medium
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Predicted Structure (AlphaFold2)

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