F255372

General Info

Members Datasets Scaffolds Average Seq Length
169 113 159 379

Family's Representative Sequence

Representative Sequence 3300046512|Ga0495610_0000689|Ga0495610_0000689_24478_25716
Length 412
Sequence MFVRAVNAMPPLFTRQRRVYPGQEHRESAAPMQFEWTPEQDAFRHTIRDFLHANLPEGWEAFSEHGPASPALTAFAREFCVKLAEAGLLFPHWPVEMGGEGLGPWEQQILAEEMWIAGEPRGGQYMNVNWIGPTLQTYGTEEQKARYLEPITKGQSLWCQGFSEPDAGSDLAALRTRAVLTDGNYVINGQKIWTSYAGLADTCFLLTRTSEDRKKGITIILVPMDTPGITVRQIPSLIGEGDIHEVFFDDVTVPETARFGEEGQAWEIVAYSLRNERLGIPRFTLARAALDRAVAMLQGQGRFVREHVRIEAARCAALCEAAATANYAVVQKRVDGLAIGAESSSARYATVMAERAVCEFVVEFVPQALAGASPYLKMHHQRGIVAGVAAGSAEIQLNIIASDVLELPREPR

Samples

Sample ID Description Type Environment
1 2510917021 Novosphingobium sp. AP12 Isolate Rhizosphere
2 2512564014 Sphingobium sp. AP49 Isolate Rhizosphere
3 2738541275 Novosphingobium sp. GV027 Isolate Unclassified
4 2738541301 Novosphingobium sp. GV079 Isolate Unclassified
5 2738541304 Novosphingobium sp. GV061 Isolate Unclassified
6 2738543022 Novosphingobium sp. GV055 Isolate Unclassified
7 2738543033 Novosphingobium sp. GV064 Isolate Unclassified
8 2818991438 Novosphingobium barchaimii 1192 Isolate Unclassified
9 2919709256 Sphingobium xenophagum 4256 Isolate Unclassified
10 3300001976 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S7 Metagenome Rhizosphere
11 3300003214 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL Metagenome Endosphere
12 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
13 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
14 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
15 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
16 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
17 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
18 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
19 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
20 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
21 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
22 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
23 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
24 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
25 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
26 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
27 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
29 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
30 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
31 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
32 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
33 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
34 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
40 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
42 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
43 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
44 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
45 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
46 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
47 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
48 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
49 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
50 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
51 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
52 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
53 3300041496 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_4 MetaG Metagenome Unclassified
54 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
55 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
56 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
57 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
58 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
59 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
60 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
61 3300046506 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 rhizosphere Metagenome Rhizosphere
62 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
63 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
64 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
65 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
66 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
67 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
68 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
69 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
70 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
71 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
72 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
73 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
74 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
75 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
76 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
77 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
78 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
79 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
80 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
81 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
82 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
83 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
84 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
85 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
86 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
90 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
92 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
93 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
94 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
95 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
96 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
97 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
98 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
99 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
100 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
101 3300053115 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 endosphere Metagenome Endosphere
102 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
103 3300053124 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co3_28_42 endosphere Metagenome Endosphere
104 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
105 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
106 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
107 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
108 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
109 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
110 3300053163 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 endosphere Metagenome Endosphere
111 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
112 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
113 8054302542 Novosphingobium kaempferiae Sx8-5 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 94.08
Metatranscriptomes 0
Isolates 5.92

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 22.49
Nodule 0
Rhizoplane 0
Rhizosphere 56.21
Stem 0
Stem Tuber 0
Unclassified 21.3

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24752J21851_1003399 3300001976 Bacteria 2094
2 JGI25165J46597_1000024 3300003214 Bacteria 335150
3 Ga0065707_10094727 3300005295 Unclassified 3460
4 Ga0070667_100000678 3300005367 Bacteria 33073
5 Ga0070665_100058641 3300005548 Bacteria 3859
6 Ga0068863_100001052 3300005841 Bacteria 27587
7 Ga0068863_100021064 3300005841 Bacteria 6227
8 Ga0068858_100072728 3300005842 Bacteria 3190
9 Ga0068862_100012431 3300005844 Bacteria 7043
10 Ga0081455_10000446 3300005937 Bacteria 54371
11 Ga0081540_1068808 3300005983 Bacteria 1648
12 Ga0081539_10045372 3300005985 Bacteria 2528
13 Ga0075368_10000023 3300006042 Bacteria 37260
14 Ga0075363_100019708 3300006048 Bacteria 3375
15 Ga0075364_10025192 3300006051 Bacteria 3785
16 Ga0075364_10062791 3300006051 Bacteria 2438
17 Ga0075362_10005302 3300006177 Bacteria 4708
18 Ga0075367_10014175 3300006178 Bacteria 4309
19 Ga0105240_10043754 3300009093 Bacteria 5694
20 Ga0105240_10057861 3300009093 Bacteria 4840
21 Ga0111539_10128446 3300009094 Bacteria 2969
22 Ga0111539_10280552 3300009094 Bacteria 1939
23 Ga0105237_10001939 3300009545 Bacteria 26362
24 Ga0105238_10165886 3300009551 Bacteria 2184
25 Ga0163162_10002766 3300013306 Bacteria 16656
26 Ga0163163_10101688 3300014325 Bacteria 2896
27 Ga0209233_1000084 3300025261 Bacteria 335222
28 Ga0209050_1000217 3300025298 Bacteria 128833
29 Ga0207695_10017581 3300025913 Bacteria 8310
30 Ga0207695_10055693 3300025913 Bacteria 4118
31 Ga0207694_10076312 3300025924 Bacteria 2625
32 Ga0207644_10032559 3300025931 Bacteria 3638
33 Ga0207703_10055653 3300026035 Bacteria 3219
34 Ga0207641_10001416 3300026088 Bacteria 23657
35 Ga0207641_10017794 3300026088 Bacteria 5823
36 Ga0209813_10000010 3300027866 Bacteria 97592
37 Ga0268265_10008016 3300028380 Bacteria 7132
38 Ga0265334_10000018 3300028573 Bacteria 146753
39 Ga0265334_10000075 3300028573 Bacteria 72027
40 Ga0307515_10060967 3300028794 Bacteria 5365
41 Ga0307511_10002988 3300030521 Bacteria 17500
42 Ga0307511_10032397 3300030521 Bacteria 4644
43 Ga0265327_10042993 3300031251 Bacteria 2422
44 Ga0307513_10027003 3300031456 Bacteria 6603
45 Ga0307513_10125274 3300031456 Bacteria 2526
46 Ga0307513_10257518 3300031456 Bacteria 1536
47 Ga0307509_10000142 3300031507 Bacteria 108077
48 Ga0307509_10005654 3300031507 Bacteria 17270
49 Ga0307508_10000103 3300031616 Bacteria 100310
50 Ga0307508_10033381 3300031616 Bacteria 4645
51 Ga0307516_10000258 3300031730 Bacteria 67844
52 Ga0307510_10000001 3300033180 Bacteria 1172244
53 Ga0307510_10001224 3300033180 Bacteria 27812
54 Ga0307510_10116548 3300033180 Bacteria 2392
55 Ga0373936_0004752 3300035113 Bacteria 5130
56 Ga0373936_0007379 3300035113 Bacteria 4138
57 Ga0373936_0016764 3300035113 Bacteria 2819
58 Ga0373936_0042143 3300035113 Bacteria 1831
59 Ga0373960_0007514 3300035121 Bacteria 2585
60 Ga0316574_0034492 3300035398 Bacteria 3086
61 Ga0451839_0159096 3300041496 Bacteria 2197
62 Ga0451841_1009921 3300041498 Bacteria 4463
63 Ga0451851_1217281 3300041507 Bacteria 2140
64 Ga0451853_2192460 3300041512 Bacteria 2006
65 Ga0495638_0000079 3300046460 Bacteria 157488
66 Ga0495638_0000191 3300046460 Bacteria 91364
67 Ga0495638_0000775 3300046460 Bacteria 33734
68 Ga0495638_0006576 3300046460 Bacteria 8453
69 Ga0495638_0066907 3300046460 Bacteria 2207
70 Ga0495650_0000163 3300046471 Bacteria 148569
71 Ga0495594_0099667 3300046499 Bacteria 1634
72 Ga0495596_0000133 3300046500 Bacteria 51283
73 Ga0495583_0000724 3300046506 Bacteria 42148
74 Ga0495583_0000736 3300046506 Bacteria 41604
75 Ga0495583_0001178 3300046506 Bacteria 28217
76 Ga0495583_0022642 3300046506 Bacteria 3200
77 Ga0495583_0057911 3300046506 Bacteria 1741
78 Ga0495610_0000689 3300046512 Bacteria 32617
79 Ga0495632_0000812 3300046519 Bacteria 27636
80 Ga0495632_0075845 3300046519 Bacteria 1609
81 Ga0495632_0120764 3300046519 Bacteria 1225
82 Ga0495643_0000039 3300046522 Bacteria 235175
83 Ga0495643_0006962 3300046522 Bacteria 7353
84 Ga0495648_0000124 3300046524 Bacteria 91364
85 Ga0495648_0100816 3300046524 Bacteria 1594
86 Ga0495609_0008661 3300046538 Bacteria 4965
87 Ga0495622_0008949 3300046557 Bacteria 4640
88 Ga0495622_0011790 3300046557 Bacteria 4041
89 Ga0495668_0015141 3300046616 Bacteria 4510
90 Ga0495625_0000011 3300046660 Bacteria 377120
91 Ga0495625_0000078 3300046660 Bacteria 161613
92 Ga0495625_0001073 3300046660 Bacteria 35529
93 Ga0495625_0001566 3300046660 Bacteria 27195
94 Ga0495625_0005620 3300046660 Bacteria 11369
95 Ga0495625_0026324 3300046660 Bacteria 4396
96 Ga0495625_0043682 3300046660 Bacteria 3249
97 Ga0495625_0053172 3300046660 Bacteria 2898
98 Ga0495613_0083354 3300046689 Bacteria 2322
99 Ga0495671_0000082 3300046692 Bacteria 91540
100 Ga0495671_0018155 3300046692 Bacteria 3736
101 Ga0495671_0043577 3300046692 Bacteria 2252
102 Ga0495677_0009268 3300047445 Bacteria 3637
103 Ga0495673_0000500 3300047469 Bacteria 41602
104 Ga0495686_0025486 3300047472 Bacteria 3876
105 Ga0495615_0000216 3300048090 Bacteria 12921
106 Ga0495615_0000421 3300048090 Bacteria 6303
107 Ga0495626_0003135 3300048091 Bacteria 10826
108 Ga0496116_0000039 3300048919 Bacteria 349134
109 Ga0496117_0091337 3300048920 Bacteria 1959
110 Ga0496118_0037463 3300048921 Bacteria 3902
111 Ga0496121_0017382 3300048924 Bacteria 7350
112 Ga0496122_0000841 3300048925 Bacteria 58100
113 Ga0496123_0001806 3300048926 Bacteria 28170
114 Ga0496123_0002030 3300048926 Bacteria 26140
115 Ga0496124_0018779 3300048927 Bacteria 6460
116 Ga0496124_0030247 3300048927 Bacteria 4809
117 Ga0496124_0093705 3300048927 Bacteria 2444
118 Ga0496126_0000041 3300048929 Bacteria 340389
119 Ga0501037_0238265 3300049573 Bacteria 1276
120 Ga0501043_0241919 3300049579 Bacteria 1392
121 Ga0501046_0161003 3300049580 Bacteria 1688
122 Ga0501047_0009857 3300049581 Bacteria 9027
123 Ga0501047_0022049 3300049581 Bacteria 6118
124 Ga0501047_0183836 3300049581 Bacteria 1956
125 Ga0501080_0154197 3300049742 Bacteria 2122
126 Ga0501035_0106878 3300049822 Bacteria 2453
127 Ga0501044_0000101 3300049823 Bacteria 106650
128 Ga0501044_0003328 3300049823 Bacteria 18110
129 Ga0501044_0005918 3300049823 Bacteria 13545
130 Ga0501044_0145913 3300049823 Bacteria 2352
131 nmdc:mga03683_4189_c1 3300050489 Bacteria 4751
132 nmdc:mga03n38_18746_c1 3300050490 Bacteria 2736
133 nmdc:mga00v17_960_c1 3300050491 Bacteria 15461
134 nmdc:mga06z11_46_c1 3300050494 Bacteria 51464
135 nmdc:mga04h51_35_c1 3300050495 Bacteria 46344
136 nmdc:mga07m45_140780_c1 3300050496 Bacteria 1397
137 nmdc:mga07m45_2095_c1 3300050496 Bacteria 9264
138 nmdc:mga07m45_2752_c1 3300050496 Bacteria 8294
139 nmdc:mga0qj67_70498_c1 3300050509 Bacteria 2788
140 Ga0500643_001022 3300053087 Bacteria 17035
141 Ga0500643_014469 3300053087 Bacteria 2741
142 Ga0500556_0107311 3300053104 Bacteria 1080
143 Ga0500591_011283 3300053115 Bacteria 4237
144 Ga0500595_000546 3300053119 Bacteria 22591
145 Ga0500617_006564 3300053124 Bacteria 4579
146 Ga0500559_0011260 3300053136 Bacteria 3823
147 Ga0500559_0050960 3300053136 Bacteria 1827
148 Ga0500568_0059872 3300053139 Bacteria 1476
149 Ga0500588_0003079 3300053146 Bacteria 3479
150 Ga0500588_0003391 3300053146 Bacteria 3363
151 Ga0500619_045384 3300053154 Bacteria 1405
152 Ga0500622_0000412 3300053156 Bacteria 40697
153 Ga0500622_0001534 3300053156 Bacteria 18308
154 Ga0500622_0017411 3300053156 Bacteria 3823
155 Ga0500622_0021814 3300053156 Bacteria 3398
156 Ga0500624_000126 3300053157 Bacteria 34188
157 Ga0500639_062425 3300053163 Bacteria 1918
158 Ga0500636_0000931 3300053177 Bacteria 15732
159 Ga0500637_0113729 3300053178 Bacteria 1569

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053104 Ga0500556_0107311 Ga0500556_0107311_13_999 326
2 3300031456 Ga0307513_10257518 Ga0307513_102575182 357
3 3300049823 Ga0501044_0145913 Ga0501044_0145913_177_1250 357
4 3300031456 Ga0307513_10027003 Ga0307513_100270033 358
5 3300033180 Ga0307510_10116548 Ga0307510_101165482 358
6 3300046471 Ga0495650_0000163 Ga0495650_0000163_39783_40928 358
7 3300046506 Ga0495583_0000724 Ga0495583_0000724_39302_40447 358
8 3300046524 Ga0495648_0100816 Ga0495648_0100816_495_1580 358
9 3300046557 Ga0495622_0011790 Ga0495622_0011790_2763_3908 358
10 3300053177 Ga0500636_0000931 Ga0500636_0000931_9632_10777 358
11 3300053119 Ga0500595_000546 Ga0500595_000546_3183_4328 359
12 3300053154 Ga0500619_045384 Ga0500619_045384_42_1187 359
13 3300005985 Ga0081539_10045372 Ga0081539_100453723 360
14 3300053136 Ga0500559_0011260 Ga0500559_0011260_927_2072 366
15 iso_pu_bacteria 2510917021 2511125786 374
16 iso_pu_bacteria 2512564014 2512644866 374
17 iso_pu_bacteria 2818991438 2819550613 374
18 iso_pu_bacteria 2919709256 2919712380 374
19 iso_pu_bacteria 8054302542 8054305814 374
20 iso_pu_bacteria 2738541275 2738709143 375
21 iso_pu_bacteria 2738541301 2738847568 375
22 iso_pu_bacteria 2738541304 2738863297 375
23 iso_pu_bacteria 2738543022 2739295815 375
24 iso_pu_bacteria 2738543033 2739357493 375
25 3300009094 Ga0111539_10128446 Ga0111539_101284462 376
26 3300009094 Ga0111539_10280552 Ga0111539_102805522 376
27 3300009545 Ga0105237_10001939 Ga0105237_1000193920 376
28 3300028573 Ga0265334_10000018 Ga0265334_10000018112 376
29 3300028573 Ga0265334_10000075 Ga0265334_100000754 376
30 3300030521 Ga0307511_10002988 Ga0307511_1000298813 376
31 3300030521 Ga0307511_10032397 Ga0307511_100323973 376
32 3300031456 Ga0307513_10125274 Ga0307513_101252742 376
33 3300031507 Ga0307509_10000142 Ga0307509_1000014231 376
34 3300031507 Ga0307509_10005654 Ga0307509_1000565416 376
35 3300031730 Ga0307516_10000258 Ga0307516_100002584 376
36 3300033180 Ga0307510_10000001 Ga0307510_1000000186 376
37 3300035113 Ga0373936_0004752 Ga0373936_0004752_2396_3532 376
38 3300035113 Ga0373936_0007379 Ga0373936_0007379_1053_2222 376
39 3300035398 Ga0316574_0034492 Ga0316574_0034492_1918_3054 376
40 3300041496 Ga0451839_0159096 Ga0451839_0159096_321_1457 376
41 3300041498 Ga0451841_1009921 Ga0451841_1009921_3097_4233 376
42 3300041507 Ga0451851_1217281 Ga0451851_1217281_737_1873 376
43 3300046460 Ga0495638_0006576 Ga0495638_0006576_5949_7085 376
44 3300046519 Ga0495632_0120764 Ga0495632_0120764_10_1146 376
45 3300046557 Ga0495622_0008949 Ga0495622_0008949_1918_3057 376
46 3300046660 Ga0495625_0026324 Ga0495625_0026324_719_1855 376
47 3300049580 Ga0501046_0161003 Ga0501046_0161003_204_1340 376
48 3300049581 Ga0501047_0009857 Ga0501047_0009857_6768_7904 376
49 3300049581 Ga0501047_0183836 Ga0501047_0183836_229_1365 376
50 3300049742 Ga0501080_0154197 Ga0501080_0154197_768_1904 376
51 3300049822 Ga0501035_0106878 Ga0501035_0106878_1137_2273 376
52 3300049823 Ga0501044_0003328 Ga0501044_0003328_959_2095 376
53 3300050509 nmdc:mga0qj67_70498_c1 nmdc:mga0qj67_70498_c1_448_1584 376
54 3300053124 Ga0500617_006564 Ga0500617_006564_738_1874 376
55 3300053139 Ga0500568_0059872 Ga0500568_0059872_90_1226 376
56 3300053146 Ga0500588_0003079 Ga0500588_0003079_1442_2578 376
57 3300053146 Ga0500588_0003391 Ga0500588_0003391_563_1699 376
58 3300053156 Ga0500622_0001534 Ga0500622_0001534_11168_12304 376
59 3300053156 Ga0500622_0017411 Ga0500622_0017411_52_1188 376
60 3300053156 Ga0500622_0021814 Ga0500622_0021814_1442_2578 376
61 3300053178 Ga0500637_0113729 Ga0500637_0113729_29_1165 376
62 3300006051 Ga0075364_10025192 Ga0075364_100251923 377
63 3300006177 Ga0075362_10005302 Ga0075362_100053022 377
64 3300031251 Ga0265327_10042993 Ga0265327_100429931 377
65 3300035113 Ga0373936_0016764 Ga0373936_0016764_1183_2319 377
66 3300035113 Ga0373936_0042143 Ga0373936_0042143_349_1485 377
67 3300035121 Ga0373960_0007514 Ga0373960_0007514_1153_2289 377
68 3300046499 Ga0495594_0099667 Ga0495594_0099667_364_1500 377
69 3300046689 Ga0495613_0083354 Ga0495613_0083354_751_1887 377
70 3300050489 nmdc:mga03683_4189_c1 nmdc:mga03683_4189_c1_3441_4577 377
71 3300050491 nmdc:mga00v17_960_c1 nmdc:mga00v17_960_c1_8018_9154 377
72 3300050496 nmdc:mga07m45_140780_c1 nmdc:mga07m45_140780_c1_22_1158 377
73 3300053115 Ga0500591_011283 Ga0500591_011283_2889_4025 377
74 3300053163 Ga0500639_062425 Ga0500639_062425_294_1430 377
75 3300003214 JGI25165J46597_1000024 JGI25165J46597_1000024306 378
76 3300005367 Ga0070667_100000678 Ga0070667_10000067824 378
77 3300005548 Ga0070665_100058641 Ga0070665_1000586414 378
78 3300005841 Ga0068863_100021064 Ga0068863_1000210643 378
79 3300005842 Ga0068858_100072728 Ga0068858_1000727282 378
80 3300005937 Ga0081455_10000446 Ga0081455_1000044622 378
81 3300005983 Ga0081540_1068808 Ga0081540_10688082 378
82 3300006042 Ga0075368_10000023 Ga0075368_1000002322 378
83 3300006048 Ga0075363_100019708 Ga0075363_1000197083 378
84 3300006051 Ga0075364_10062791 Ga0075364_100627912 378
85 3300006178 Ga0075367_10014175 Ga0075367_100141753 378
86 3300009093 Ga0105240_10057861 Ga0105240_100578613 378
87 3300013306 Ga0163162_10002766 Ga0163162_100027665 378
88 3300025261 Ga0209233_1000084 Ga0209233_10000847 378
89 3300025298 Ga0209050_1000217 Ga0209050_1000217111 378
90 3300025913 Ga0207695_10055693 Ga0207695_100556933 378
91 3300025931 Ga0207644_10032559 Ga0207644_100325592 378
92 3300026035 Ga0207703_10055653 Ga0207703_100556532 378
93 3300026088 Ga0207641_10017794 Ga0207641_100177942 378
94 3300027866 Ga0209813_10000010 Ga0209813_1000001043 378
95 3300028794 Ga0307515_10060967 Ga0307515_100609674 378
96 3300031616 Ga0307508_10000103 Ga0307508_1000010339 378
97 3300031616 Ga0307508_10033381 Ga0307508_100333812 378
98 3300033180 Ga0307510_10001224 Ga0307510_1000122412 378
99 3300041512 Ga0451853_2192460 Ga0451853_2192460_301_1446 378
100 3300046460 Ga0495638_0000079 Ga0495638_0000079_68885_70030 378
101 3300046460 Ga0495638_0000191 Ga0495638_0000191_19965_21110 378
102 3300046460 Ga0495638_0000775 Ga0495638_0000775_32385_33530 378
103 3300046460 Ga0495638_0066907 Ga0495638_0066907_827_1972 378
104 3300046500 Ga0495596_0000133 Ga0495596_0000133_25992_27137 378
105 3300046506 Ga0495583_0000736 Ga0495583_0000736_20220_21365 378
106 3300046506 Ga0495583_0001178 Ga0495583_0001178_895_2040 378
107 3300046506 Ga0495583_0057911 Ga0495583_0057911_13_1158 378
108 3300046512 Ga0495610_0000689 Ga0495610_0000689_24478_25716 378
109 3300046519 Ga0495632_0000812 Ga0495632_0000812_16736_17881 378
110 3300046519 Ga0495632_0075845 Ga0495632_0075845_39_1184 378
111 3300046522 Ga0495643_0000039 Ga0495643_0000039_11037_12182 378
112 3300046522 Ga0495643_0006962 Ga0495643_0006962_1709_2854 378
113 3300046524 Ga0495648_0000124 Ga0495648_0000124_19965_21110 378
114 3300046538 Ga0495609_0008661 Ga0495609_0008661_46_1191 378
115 3300046616 Ga0495668_0015141 Ga0495668_0015141_410_1555 378
116 3300046660 Ga0495625_0000011 Ga0495625_0000011_188287_189432 378
117 3300046660 Ga0495625_0000078 Ga0495625_0000078_113403_114548 378
118 3300046660 Ga0495625_0001073 Ga0495625_0001073_4103_5248 378
119 3300046660 Ga0495625_0001566 Ga0495625_0001566_19601_20749 378
120 3300046660 Ga0495625_0005620 Ga0495625_0005620_4714_5859 378
121 3300046660 Ga0495625_0043682 Ga0495625_0043682_1150_2295 378
122 3300046660 Ga0495625_0053172 Ga0495625_0053172_1052_2197 378
123 3300046692 Ga0495671_0000082 Ga0495671_0000082_20221_21366 378
124 3300046692 Ga0495671_0018155 Ga0495671_0018155_521_1666 378
125 3300046692 Ga0495671_0043577 Ga0495671_0043577_546_1691 378
126 3300047445 Ga0495677_0009268 Ga0495677_0009268_1433_2578 378
127 3300047469 Ga0495673_0000500 Ga0495673_0000500_20237_21382 378
128 3300047472 Ga0495686_0025486 Ga0495686_0025486_748_1893 378
129 3300048090 Ga0495615_0000421 Ga0495615_0000421_2816_3961 378
130 3300048091 Ga0495626_0003135 Ga0495626_0003135_103_1248 378
131 3300048919 Ga0496116_0000039 Ga0496116_0000039_248666_249811 378
132 3300048920 Ga0496117_0091337 Ga0496117_0091337_710_1855 378
133 3300048921 Ga0496118_0037463 Ga0496118_0037463_516_1661 378
134 3300048924 Ga0496121_0017382 Ga0496121_0017382_1407_2552 378
135 3300048925 Ga0496122_0000841 Ga0496122_0000841_31889_33034 378
136 3300048926 Ga0496123_0001806 Ga0496123_0001806_26040_27185 378
137 3300048926 Ga0496123_0002030 Ga0496123_0002030_10171_11316 378
138 3300048927 Ga0496124_0018779 Ga0496124_0018779_1896_3041 378
139 3300048927 Ga0496124_0030247 Ga0496124_0030247_88_1233 378
140 3300048927 Ga0496124_0093705 Ga0496124_0093705_1108_2253 378
141 3300048929 Ga0496126_0000041 Ga0496126_0000041_92089_93234 378
142 3300049579 Ga0501043_0241919 Ga0501043_0241919_219_1367 378
143 3300049581 Ga0501047_0022049 Ga0501047_0022049_4110_5258 378
144 3300049823 Ga0501044_0005918 Ga0501044_0005918_962_2107 378
145 3300050490 nmdc:mga03n38_18746_c1 nmdc:mga03n38_18746_c1_1266_2411 378
146 3300050494 nmdc:mga06z11_46_c1 nmdc:mga06z11_46_c1_10650_11795 378
147 3300050495 nmdc:mga04h51_35_c1 nmdc:mga04h51_35_c1_5530_6675 378
148 3300050496 nmdc:mga07m45_2095_c1 nmdc:mga07m45_2095_c1_5238_6395 378
149 3300050496 nmdc:mga07m45_2752_c1 nmdc:mga07m45_2752_c1_4359_5504 378
150 3300053087 Ga0500643_001022 Ga0500643_001022_908_2053 378
151 3300053087 Ga0500643_014469 Ga0500643_014469_594_1739 378
152 3300053136 Ga0500559_0050960 Ga0500559_0050960_441_1586 378
153 3300053157 Ga0500624_000126 Ga0500624_000126_5049_6194 378
154 3300005844 Ga0068862_100012431 Ga0068862_1000124315 379
155 3300009093 Ga0105240_10043754 Ga0105240_100437545 379
156 3300009551 Ga0105238_10165886 Ga0105238_101658863 379
157 3300025913 Ga0207695_10017581 Ga0207695_100175815 379
158 3300025924 Ga0207694_10076312 Ga0207694_100763122 379
159 3300028380 Ga0268265_10008016 Ga0268265_100080163 379
160 3300046506 Ga0495583_0022642 Ga0495583_0022642_168_1310 379
161 3300048090 Ga0495615_0000216 Ga0495615_0000216_3341_4483 379
162 3300049573 Ga0501037_0238265 Ga0501037_0238265_82_1221 379
163 3300049823 Ga0501044_0000101 Ga0501044_0000101_98569_99711 379
164 3300053156 Ga0500622_0000412 Ga0500622_0000412_34855_35994 379
165 3300001976 JGI24752J21851_1003399 JGI24752J21851_10033991 380
166 3300005295 Ga0065707_10094727 Ga0065707_100947272 380
167 3300005841 Ga0068863_100001052 Ga0068863_10000105220 380
168 3300014325 Ga0163163_10101688 Ga0163163_101016882 380
169 3300026088 Ga0207641_10001416 Ga0207641_1000141617 380

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00441

Acyl-CoA_dh_1

Acyl-CoA dehydrogenase, C-terminal domain

263

405

0.93

PF02770

Acyl-CoA_dh_M

Acyl-CoA dehydrogenase, middle domain

159

251

0.92

PF02771

Acyl-CoA_dh_N

Acyl-CoA dehydrogenase, N-terminal domain

37

155

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
6wy8-assembly1.cif.gz_D tcur3481-tcur3483 steroid acad 0.8669 1 380
6wy8-assembly1.cif.gz_D tcur3481-tcur3483 steroid acad 0.8647 1 380
6wy9-assembly1.cif.gz_A-2 tcur3481-tcur3483 steroid acad g363a variant 0.8581 8 380
4x28-assembly1.cif.gz_B crystal structure of the chse4-chse5 complex from mycobacterium tuberculosis 0.8488 1 380
4x28-assembly1.cif.gz_A crystal structure of the chse4-chse5 complex from mycobacterium tuberculosis 0.8482 1 380
ID Description Score Start End Superfamily
4x28D02 Mainly Beta;Beta Barrel;Butyryl-CoA Dehydrogenase, subunit A; domain 2;Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.8772 146 241 2.40.110.10
af_Q0DCC7_1_83_2.40.110.10 Mainly Beta;Beta Barrel;Butyryl-CoA Dehydrogenase, subunit A; domain 2;Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.8672 154 229 2.40.110.10
af_P96855_462_572_2.40.110.10 Mainly Beta;Beta Barrel;Butyryl-CoA Dehydrogenase, subunit A; domain 2;Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.8657 129 236 2.40.110.10
4n5fB02 Mainly Beta;Beta Barrel;Butyryl-CoA Dehydrogenase, subunit A; domain 2;Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.8641 146 231 2.40.110.10
3nf4B02 Mainly Beta;Beta Barrel;Butyryl-CoA Dehydrogenase, subunit A; domain 2;Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.8629 146 238 2.40.110.10
ID Description Score Start End GO Terms
AF-A0A7Z0JLF1-F1-model_v4 deleted 0.9234 22 378
AF-A0A7Z0JLF1-F1-model_v4 deleted 0.9135 22 378
AF-A0A2E0HE03-F1-model_v4 Acyl-CoA dehydrogenase 0.912 132 380 GO:0005886
GO:0016627
AF-A0A6J6Z036-F1-model_v4 Unannotated protein 0.9112 1 380 GO:0005886
GO:0016627
GO:0050660
AF-A0A6J6Z036-F1-model_v4 Unannotated protein 0.909 1 380 GO:0005886
GO:0016627
GO:0050660

Feature Viewer

pLDDT pTM Quality
87.19 0.87 High
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Predicted Structure (AlphaFold2)

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