F255142

General Info

Members Datasets Scaffolds Average Seq Length
169 124 132 420

Family's Representative Sequence

Representative Sequence 3300037418|Ga0395900_0000390|Ga0395900_0000390_5661_6983
Length 440
Sequence MWPFSRENRAKTPESSAIALEIDAKSLETRDSIENQNIPVSAENFLAYFGIQSANLPAVTIDSALAVPAVWAAVAFLSRTMAALPLHAYRDTKEGPKQLSGRLESLLHDAPNPEQGSFKFRQWFWQQVFTGGRGLAWIERTPQGVDSLWPMDPTKTTIQRRGGRVFYQFGDPQHPVKEYPAEDVIDVPFMLWHDGLRHYGPITMGSKAIQLALAMNDYGSNFFAGGGVPPLALTGPLPAGKDAMQRAQADIKRSVDAAKNANEAVFPIPPGYELKPVGIDPAKGQMIEARRFQVEEIARIYQLPKVFLQDLIGATFSNTEQQNLMLVQHLVGQWAEAFEDELNLKLFGRNGGGGKYVEHNLDGILRGDFLTRMNGLGQAVQNGLLTPNEGRALDNRPAMANGDKLYIQGATVPLGSNVAKPGTPPTGGANDNKPNEAKAA

Samples

Sample ID Description Type Environment
1 2510065019 Rhizobium leguminosarum bv. trifolii WSM1689 Isolate Nodule
2 2513237140 Sinorhizobium meliloti GVPV12 Isolate Nodule
3 2534681796 Rhizobium grahamii CCGE 502 Isolate Nodule
4 2582581307 Rhizobium sp. YR060 Isolate Rhizosphere
5 2791355267 Rhizobium sp. L18 Isolate Nodule
6 2830075706 Sphingomonas jinjuensis DSM 21457 Isolate Rhizosphere
7 2837651117 Pseudohoeflea suaedae YC6898 Isolate Unclassified
8 2838042994 Rhizobium esperanzae SEMIA 4089 Isolate Nodule
9 2838048938 Rhizobium pisi 27/80 Isolate Nodule
10 2838661181 Rhizobium mongolense SEMIA 402 Isolate Nodule
11 2842363717 Rhizobium leguminosarum SEMIA 4016 Isolate Nodule
12 2848992105 Sinorhizobium fredii CCBAU 25509 Isolate Unclassified
13 2869278585 Mesorhizobium sp. M8A.F.Ca.ET.198.01.1.1 Isolate Nodule
14 2882632389 Mesorhizobium waimense ICMP19557 Isolate Unclassified
15 2888337043 Mesorhizobium sp. M8A.F.Ca.ET.057.01.1.1 Isolate Nodule
16 2915650412 Ochrobactrum sp. CM-21-5 Isolate Rhizosphere
17 2916021584 Sinorhizobium meliloti USDA1550 Isolate Nodule
18 2937113482 Sinorhizobium meliloti USDA1180 Isolate Nodule
19 2957505466 Sinorhizobium meliloti USDA1696 Isolate Nodule
20 2958034702 Mesorhizobium sp. M8A.F.Ca.ET.202.01.1.1 Isolate Nodule
21 2958041894 Mesorhizobium sp. M00.F.Ca.ET.149.01.1.1 Isolate Nodule
22 2960687367 Sinorhizobium meliloti USDA1462 Isolate Nodule
23 2965062239 Mesorhizobium sp. M1A.F.Ca.ET.072.01.1.1 Isolate Nodule
24 2967762386 Sinorhizobium meliloti USDA1397 Isolate Nodule
25 2970047711 Sinorhizobium meliloti USDA1793 Isolate Nodule
26 2970095765 Sinorhizobium meliloti USDA1225 Isolate Nodule
27 2970109326 Sinorhizobium meliloti USDA1186 Isolate Nodule
28 2970593180 Mesorhizobium sp. M8A.F.Ca.ET.197.01.1.1 Isolate Nodule
29 2977565890 Sinorhizobium meliloti USDA1617 Isolate Nodule
30 2989349275 Shinella kummerowiae CCBAU 25048 Isolate Unclassified
31 2996310559 Mesorhizobium zhangyense CGMCC 1.15528 Isolate Unclassified
32 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
33 3300003792 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 Metagenome Endosphere
34 3300003856 Agave microbial communities from Guanajuato, Mexico - At.Am.rz Metagenome Rhizosphere
35 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
36 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
37 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
38 3300009766 Root nodule microbial communities of legume samples collected from Mexico - Turtle bean Mexico white nodule Metagenome Nodule
39 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
40 3300021320 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 Metagenome Nodule
41 3300021321 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1 Metagenome Nodule
42 3300021324 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS4 Metagenome Nodule
43 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
44 3300022739 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - brown nodules Metagenome Nodule
45 3300022740 Root nodule microbial communities from Medicago polymorpha collected in Santa Monica, California, United States - pink nodules Metagenome Nodule
46 3300025273 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) Metagenome Endosphere
47 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
48 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
49 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
50 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
51 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
52 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
55 3300027312 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (SPAdes) (version 2) Metagenome Rhizosphere
56 3300027666 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 (SPAdes) (version 2) Metagenome Nodule
57 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
58 3300030500 Agave microbial communities from Guanajuato, Mexico - At.Am.rz (v2) (version 3) Metagenome Rhizosphere
59 3300031967 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - elongated nodules Metagenome Nodule
60 3300033430 Medicago polymorpha root nodule microbial communities from Los Angeles, California, United States - small nodules Metagenome Nodule
61 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
62 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
63 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
64 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
65 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
66 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
67 3300046457 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 rhizosphere Metagenome Rhizosphere
68 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
69 3300046491 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 rhizosphere Metagenome Rhizosphere
70 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
71 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
72 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
73 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
74 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
75 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
76 3300046520 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 rhizosphere Metagenome Rhizosphere
77 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
78 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
79 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
80 3300046538 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co1_12_7 rhizosphere Metagenome Rhizosphere
81 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
82 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
83 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
84 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
85 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
86 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
87 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
88 3300047445 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 rhizosphere Metagenome Rhizosphere
89 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
90 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
91 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
92 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
93 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
94 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
95 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
96 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
97 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
98 3300049459 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 rhizosphere Metagenome Rhizosphere
99 3300049460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 rhizosphere Metagenome Rhizosphere
100 3300049516 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_B_5_drought Metagenome Rhizosphere
101 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
102 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
103 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
104 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
107 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
109 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
110 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
111 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
112 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
113 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
114 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
115 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
116 3300053079 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co2_47_23 endosphere Metagenome Endosphere
117 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
118 3300053137 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 endosphere Metagenome Endosphere
119 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
120 8005282627 Rhizobium phaseoli NC1 Isolate Nodule
121 8005626139 Rhizobium phaseoli Y18 Isolate Nodule
122 8018127388 Rhizobium aegyptiacum 950 Isolate Nodule
123 8018163183 Rhizobium sp. WYCCWR 11146 Isolate Nodule
124 8055431914 Allorhizobium sonneratiae BGMRC 0089 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 78.11
Metatranscriptomes 0
Isolates 21.89

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.1
Nodule 24.26
Rhizoplane 1.18
Rhizosphere 59.17
Stem 0
Stem Tuber 0
Unclassified 8.28

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootL2_10003580 3300003322 Bacteria 61028
2 Ga0055540_1000103 3300003792 Bacteria 94710
3 Ga0058692_1006890 3300003856 Bacteria 3067
4 Ga0070666_10010578 3300005335 Bacteria 5775
5 Ga0079104_1000948 3300006946 Bacteria 22997
6 Ga0099826_10001128 3300006948 Bacteria 15287
7 Ga0123342_1002968 3300009766 Bacteria 27786
8 Ga0157370_10020559 3300013104 Bacteria 6590
9 Ga0214544_1004738 3300021320 Bacteria 27054
10 Ga0214542_1003923 3300021321 Bacteria 29838
11 Ga0214545_1002016 3300021324 Bacteria 38870
12 Ga0214543_1002541 3300021327 Bacteria 35894
13 Ga0228711_1002051 3300022739 Bacteria 30582
14 Ga0228710_1005591 3300022740 Bacteria 19462
15 Ga0209673_1001187 3300025273 Bacteria 28067
16 Ga0209025_1041274 3300025294 Bacteria 1979
17 Ga0209564_1000854 3300025295 Bacteria 40712
18 Ga0209050_1005009 3300025298 Bacteria 8605
19 Ga0209256_1001007 3300025299 Bacteria 33274
20 Ga0209051_1000095 3300025303 Bacteria 167840
21 Ga0209257_1005427 3300025304 Bacteria 8961
22 Ga0207680_10007036 3300025903 Bacteria 5465
23 Ga0209281_1000992 3300027111 Bacteria 22531
24 Ga0209371_1000229 3300027312 Bacteria 71827
25 Ga0209282_1000932 3300027666 Bacteria 15290
26 Ga0307515_10001124 3300028794 Bacteria 61171
27 Ga0268256_1000373 3300030500 Bacteria 42542
28 Ga0315914_1002655 3300031967 Bacteria 27372
29 Ga0315913_1001673 3300033430 Bacteria 24891
30 Ga0395899_0000291 3300037312 Bacteria 64683
31 Ga0395899_0000518 3300037312 Bacteria 42666
32 Ga0395899_0020555 3300037312 Bacteria 5004
33 Ga0395899_0045388 3300037312 Bacteria 3274
34 Ga0395900_0000390 3300037418 Bacteria 63448
35 Ga0395900_0000737 3300037418 Bacteria 43461
36 Ga0395900_0000751 3300037418 Bacteria 43126
37 Ga0395900_0001015 3300037418 Bacteria 36194
38 Ga0395900_0001344 3300037418 Bacteria 29723
39 Ga0395900_0004831 3300037418 Bacteria 14193
40 Ga0395900_0007831 3300037418 Bacteria 11011
41 Ga0395900_0095874 3300037418 Bacteria 3048
42 Ga0395900_0096379 3300037418 Viruses 3039
43 Ga0395900_0122753 3300037418 Viruses 2664
44 Ga0395900_0134397 3300037418 Bacteria 2534
45 Ga0395900_0225654 3300037418 Bacteria 1886
46 Ga0395898_0001032 3300037466 Bacteria 43441
47 Ga0395898_0001661 3300037466 Bacteria 29839
48 Ga0395898_0001763 3300037466 Bacteria 28342
49 Ga0395898_0002045 3300037466 Bacteria 25214
50 Ga0395898_0002797 3300037466 Bacteria 20004
51 Ga0395898_0002897 3300037466 Bacteria 19523
52 Ga0395898_0006149 3300037466 Bacteria 12860
53 Ga0395898_0006772 3300037466 Bacteria 12202
54 Ga0395898_0024869 3300037466 Bacteria 6037
55 Ga0395898_0090378 3300037466 Bacteria 2946
56 Ga0395905_0000692 3300037471 Bacteria 44697
57 Ga0395905_0000758 3300037471 Viruses 42564
58 Ga0395905_0001036 3300037471 Bacteria 35268
59 Ga0395905_0002100 3300037471 Bacteria 22656
60 Ga0395905_0033800 3300037471 Bacteria 4803
61 Ga0395905_0095867 3300037471 Bacteria 2785
62 Ga0395901_0000541 3300038443 Bacteria 43481
63 Ga0395901_0000573 3300038443 Bacteria 42822
64 Ga0395901_0001321 3300038443 Bacteria 26109
65 Ga0395901_0016223 3300038443 Bacteria 7588
66 Ga0395901_0083444 3300038443 Viruses 3340
67 Ga0451849_0856144 3300041505 Bacteria 3512
68 Ga0495590_0000082 3300046457 Bacteria 62692
69 Ga0495605_0008533 3300046474 Bacteria 5789
70 Ga0495584_0002837 3300046491 Bacteria 9674
71 Ga0495607_0009477 3300046501 Bacteria 6586
72 Ga0495606_0000602 3300046507 Bacteria 56964
73 Ga0495606_0001724 3300046507 Bacteria 28102
74 Ga0495606_0002043 3300046507 Bacteria 24723
75 Ga0495610_0003493 3300046512 Bacteria 12222
76 Ga0495610_0022691 3300046512 Bacteria 3428
77 Ga0495616_0000239 3300046513 Bacteria 44698
78 Ga0495620_0000251 3300046515 Bacteria 39787
79 Ga0495632_0000429 3300046519 Bacteria 39989
80 Ga0495637_0002299 3300046520 Bacteria 10594
81 Ga0495637_0006643 3300046520 Bacteria 5789
82 Ga0495643_0000337 3300046522 Bacteria 63856
83 Ga0495643_0001058 3300046522 Bacteria 27626
84 Ga0495643_0003079 3300046522 Bacteria 12520
85 Ga0495648_0000250 3300046524 Bacteria 60781
86 Ga0495654_0000219 3300046530 Bacteria 53727
87 Ga0495609_0000953 3300046538 Bacteria 20925
88 Ga0495597_0006630 3300046542 Bacteria 5967
89 Ga0495625_0000659 3300046660 Bacteria 49323
90 Ga0495588_0000470 3300046674 Bacteria 20171
91 Ga0495671_0026784 3300046692 Bacteria 2984
92 Ga0495649_0000142 3300046694 Bacteria 62545
93 Ga0495660_0000198 3300046810 Bacteria 62786
94 Ga0495683_0000361 3300047323 Bacteria 37520
95 Ga0495677_0004204 3300047445 Bacteria 5552
96 Ga0495673_0023310 3300047469 Bacteria 3014
97 Ga0495686_0001384 3300047472 Bacteria 26917
98 Ga0495626_0000586 3300048091 Bacteria 36070
99 Ga0496108_0000311 3300048911 Bacteria 41465
100 Ga0496109_0001123 3300048912 Bacteria 22258
101 Ga0496117_0001126 3300048920 Bacteria 40294
102 Ga0496118_0001183 3300048921 Bacteria 40294
103 Ga0496124_0045782 3300048927 Bacteria 3750
104 Ga0496124_0184261 3300048927 Bacteria 1603
105 Ga0496125_0012529 3300048928 Bacteria 8411
106 Ga0495678_000357 3300049459 Bacteria 46974
107 Ga0495682_0000374 3300049460 Bacteria 32424
108 Ga0501293_000001 3300049516 Bacteria 42123
109 Ga0501031_0070350 3300049568 Viruses 2279
110 Ga0501032_0022266 3300049569 Bacteria 4394
111 Ga0501033_0000904 3300049570 Bacteria 27078
112 Ga0501033_0025217 3300049570 Bacteria 4480
113 Ga0501034_0149884 3300049571 Bacteria 2309
114 Ga0501037_0000171 3300049573 Bacteria 61350
115 Ga0501038_0026317 3300049574 Bacteria 5182
116 Ga0501043_0000066 3300049579 Bacteria 93258
117 Ga0501069_0000002 3300049585 Bacteria 269636
118 Ga0501070_0000281 3300049586 Bacteria 47619
119 Ga0501071_0053505 3300049587 Bacteria 2912
120 Ga0501074_0000009 3300049590 Bacteria 100578
121 Ga0501080_0003340 3300049742 Bacteria 14170
122 Ga0501280_000066 3300049776 Bacteria 30294
123 Ga0501035_0000170 3300049822 Bacteria 79614
124 Ga0501035_0012369 3300049822 Bacteria 7890
125 Ga0501035_0206385 3300049822 Bacteria 1683
126 Ga0501044_0000087 3300049823 Bacteria 112979
127 Ga0501044_0000991 3300049823 Bacteria 34129
128 Ga0501044_0193465 3300049823 Bacteria 1995
129 Ga0500610_0039304 3300053079 Bacteria 2441
130 Ga0500608_015135 3300053122 Viruses 3459
131 Ga0500561_0000025 3300053137 Bacteria 32346
132 Ga0500616_0000519 3300053153 Bacteria 48825

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300037466 Ga0395898_0090378 Ga0395898_0090378_48_1097 344
2 iso_pu_bacteria 2915650412 2915653724 387
3 3300037418 Ga0395900_0000737 Ga0395900_0000737_33298_34551 398
4 3300037466 Ga0395898_0001032 Ga0395898_0001032_40189_41442 398
5 3300037471 Ga0395905_0001036 Ga0395905_0001036_4576_5829 398
6 3300038443 Ga0395901_0000541 Ga0395901_0000541_35577_36830 398
7 3300048911 Ga0496108_0000311 Ga0496108_0000311_38129_39343 399
8 3300048912 Ga0496109_0001123 Ga0496109_0001123_18975_20189 399
9 3300049823 Ga0501044_0000991 Ga0501044_0000991_9481_10752 400
10 3300037312 Ga0395899_0045388 Ga0395899_0045388_1717_2946 402
11 3300037418 Ga0395900_0096379 Ga0395900_0096379_486_1727 402
12 3300037418 Ga0395900_0134397 Ga0395900_0134397_934_2163 402
13 3300037466 Ga0395898_0002897 Ga0395898_0002897_3301_4530 402
14 3300037466 Ga0395898_0024869 Ga0395898_0024869_4700_5941 402
15 3300037471 Ga0395905_0095867 Ga0395905_0095867_91_1320 402
16 3300037312 Ga0395899_0020555 Ga0395899_0020555_172_1425 403
17 3300037418 Ga0395900_0007831 Ga0395900_0007831_6876_8120 403
18 3300037466 Ga0395898_0001763 Ga0395898_0001763_2892_4136 403
19 3300037471 Ga0395905_0033800 Ga0395905_0033800_668_1912 403
20 3300038443 Ga0395901_0016223 Ga0395901_0016223_3453_4697 403
21 3300021320 Ga0214544_1004738 Ga0214544_100473818 404
22 3300021321 Ga0214542_1003923 Ga0214542_100392318 404
23 3300021324 Ga0214545_1002016 Ga0214545_100201633 404
24 3300021327 Ga0214543_1002541 Ga0214543_100254133 404
25 3300037418 Ga0395900_0001344 Ga0395900_0001344_12944_14185 405
26 3300037466 Ga0395898_0006149 Ga0395898_0006149_5073_6314 405
27 3300037471 Ga0395905_0002100 Ga0395905_0002100_8676_9917 405
28 iso_pu_bacteria 2965062239 2965063691 405
29 3300037418 Ga0395900_0004831 Ga0395900_0004831_7948_9201 406
30 3300037466 Ga0395898_0002045 Ga0395898_0002045_1993_3246 406
31 3300038443 Ga0395901_0083444 Ga0395901_0083444_95_1348 406
32 3300013104 Ga0157370_10020559 Ga0157370_100205593 407
33 3300037418 Ga0395900_0122753 Ga0395900_0122753_105_1361 408
34 iso_pu_bacteria 2830075706 2830076508 408
35 iso_pu_bacteria 8055431914 8055434449 408
36 3300037312 Ga0395899_0000518 Ga0395899_0000518_2803_4074 409
37 3300037418 Ga0395900_0000751 Ga0395900_0000751_19668_20939 409
38 3300037466 Ga0395898_0002797 Ga0395898_0002797_2825_4096 409
39 3300037471 Ga0395905_0000692 Ga0395905_0000692_38875_40146 409
40 3300038443 Ga0395901_0000573 Ga0395901_0000573_16807_18078 409
41 3300048920 Ga0496117_0001126 Ga0496117_0001126_24638_25915 409
42 3300048921 Ga0496118_0001183 Ga0496118_0001183_14380_15657 409
43 3300048927 Ga0496124_0184261 Ga0496124_0184261_120_1394 409
44 3300048928 Ga0496125_0012529 Ga0496125_0012529_5818_7092 409
45 3300053137 Ga0500561_0000025 Ga0500561_0000025_22324_23598 409
46 iso_pu_bacteria 2837651117 2837653220 409
47 iso_pu_bacteria 2970047711 2970048781 409
48 3300049568 Ga0501031_0070350 Ga0501031_0070350_829_2094 410
49 3300049569 Ga0501032_0022266 Ga0501032_0022266_3057_4322 410
50 3300049570 Ga0501033_0000904 Ga0501033_0000904_4515_5780 410
51 3300049573 Ga0501037_0000171 Ga0501037_0000171_28440_29705 410
52 3300049579 Ga0501043_0000066 Ga0501043_0000066_60497_61762 410
53 3300049585 Ga0501069_0000002 Ga0501069_0000002_143338_144603 410
54 3300049586 Ga0501070_0000281 Ga0501070_0000281_12828_14093 410
55 3300049587 Ga0501071_0053505 Ga0501071_0053505_1199_2464 410
56 3300049590 Ga0501074_0000009 Ga0501074_0000009_43901_45166 410
57 3300049742 Ga0501080_0003340 Ga0501080_0003340_6144_7409 410
58 3300049822 Ga0501035_0000170 Ga0501035_0000170_31637_32902 410
59 3300049823 Ga0501044_0000087 Ga0501044_0000087_14390_15655 410
60 iso_pu_bacteria 2848992105 2848993745 410
61 iso_pu_bacteria 2916021584 2916024551 410
62 iso_pu_bacteria 2937113482 2937115751 410
63 iso_pu_bacteria 2957505466 2957511385 410
64 iso_pu_bacteria 2960687367 2960690808 410
65 iso_pu_bacteria 2967762386 2967765135 410
66 iso_pu_bacteria 2977565890 2977570500 410
67 3300049516 Ga0501293_000001 Ga0501293_000001_11480_12748 411
68 3300049776 Ga0501280_000066 Ga0501280_000066_11505_12773 411
69 iso_pu_bacteria 2989349275 2989353056 411
70 3300053153 Ga0500616_0000519 Ga0500616_0000519_14529_15797 412
71 3300005335 Ga0070666_10010578 Ga0070666_100105784 413
72 3300006948 Ga0099826_10001128 Ga0099826_100011287 413
73 3300025294 Ga0209025_1041274 Ga0209025_10412742 413
74 3300025903 Ga0207680_10007036 Ga0207680_100070363 413
75 3300027666 Ga0209282_1000932 Ga0209282_100093217 413
76 3300031967 Ga0315914_1002655 Ga0315914_100265534 413
77 3300033430 Ga0315913_1001673 Ga0315913_100167331 413
78 iso_pu_bacteria 2510065019 2510132704 413
79 iso_pu_bacteria 2869278585 2869281107 413
80 iso_pu_bacteria 2888337043 2888340517 413
81 iso_pu_bacteria 2958034702 2958037070 413
82 iso_pu_bacteria 2958041894 2958050693 413
83 iso_pu_bacteria 2970593180 2970595711 413
84 iso_pu_bacteria 2996310559 2996313749 413
85 3300006946 Ga0079104_1000948 Ga0079104_100094825 414
86 3300022739 Ga0228711_1002051 Ga0228711_100205114 414
87 3300022740 Ga0228710_1005591 Ga0228710_100559120 414
88 3300027111 Ga0209281_1000992 Ga0209281_10009925 414
89 3300046457 Ga0495590_0000082 Ga0495590_0000082_28001_29266 414
90 3300046474 Ga0495605_0008533 Ga0495605_0008533_1374_2639 414
91 3300046491 Ga0495584_0002837 Ga0495584_0002837_3151_4416 414
92 3300046501 Ga0495607_0009477 Ga0495607_0009477_3123_4388 414
93 3300046507 Ga0495606_0002043 Ga0495606_0002043_17613_18878 414
94 3300046512 Ga0495610_0003493 Ga0495610_0003493_3151_4416 414
95 3300046513 Ga0495616_0000239 Ga0495616_0000239_16020_17285 414
96 3300046515 Ga0495620_0000251 Ga0495620_0000251_33288_34553 414
97 3300046519 Ga0495632_0000429 Ga0495632_0000429_33467_34732 414
98 3300046520 Ga0495637_0006643 Ga0495637_0006643_1374_2639 414
99 3300046522 Ga0495643_0001058 Ga0495643_0001058_3770_5035 414
100 3300046524 Ga0495648_0000250 Ga0495648_0000250_2239_3504 414
101 3300046538 Ga0495609_0000953 Ga0495609_0000953_17462_18727 414
102 3300046542 Ga0495597_0006630 Ga0495597_0006630_1660_2925 414
103 3300046660 Ga0495625_0000659 Ga0495625_0000659_31840_33105 414
104 3300046694 Ga0495649_0000142 Ga0495649_0000142_33281_34546 414
105 3300046810 Ga0495660_0000198 Ga0495660_0000198_28927_30192 414
106 3300047323 Ga0495683_0000361 Ga0495683_0000361_30998_32263 414
107 3300047445 Ga0495677_0004204 Ga0495677_0004204_2199_3464 414
108 3300047469 Ga0495673_0023310 Ga0495673_0023310_984_2249 414
109 3300047472 Ga0495686_0001384 Ga0495686_0001384_22502_23767 414
110 3300048091 Ga0495626_0000586 Ga0495626_0000586_2211_3476 414
111 3300049459 Ga0495678_000357 Ga0495678_000357_28099_29364 414
112 3300049460 Ga0495682_0000374 Ga0495682_0000374_28430_29695 414
113 iso_pu_bacteria 2582581307 2585272846 414
114 iso_pu_bacteria 2791355267 2793367021 414
115 iso_pu_bacteria 8018163183 8018164511 414
116 3300028794 Ga0307515_10001124 Ga0307515_1000112463 415
117 3300037418 Ga0395900_0000390 Ga0395900_0000390_5661_6983 415
118 3300037418 Ga0395900_0095874 Ga0395900_0095874_1257_2528 415
119 3300037466 Ga0395898_0006772 Ga0395898_0006772_2288_3556 415
120 3300049571 Ga0501034_0149884 Ga0501034_0149884_391_1662 415
121 iso_pu_bacteria 2513237140 2513882083 415
122 iso_pu_bacteria 8005626139 8005631217 415
123 3300049570 Ga0501033_0025217 Ga0501033_0025217_731_1996 416
124 3300049574 Ga0501038_0026317 Ga0501038_0026317_608_1873 416
125 3300049822 Ga0501035_0012369 Ga0501035_0012369_2511_3776 416
126 3300049822 Ga0501035_0206385 Ga0501035_0206385_365_1630 416
127 3300049823 Ga0501044_0193465 Ga0501044_0193465_68_1333 416
128 iso_pu_bacteria 2534681796 2535516218 416
129 iso_pu_bacteria 2838042994 2838044617 416
130 iso_pu_bacteria 2838661181 2838661714 416
131 iso_pu_bacteria 2842363717 2842366683 416
132 iso_pu_bacteria 2970095765 2970101759 416
133 iso_pu_bacteria 2970109326 2970112341 416
134 3300037312 Ga0395899_0000291 Ga0395899_0000291_27475_28779 417
135 3300037418 Ga0395900_0001015 Ga0395900_0001015_32860_34164 417
136 3300037466 Ga0395898_0001661 Ga0395898_0001661_27476_28780 417
137 3300038443 Ga0395901_0001321 Ga0395901_0001321_2031_3335 417
138 iso_pu_bacteria 2838048938 2838051716 417
139 iso_pu_bacteria 2882632389 2882635562 417
140 iso_pu_bacteria 8005282627 8005285601 417
141 iso_pu_bacteria 8005282627 8005288470 417
142 iso_pu_bacteria 8018127388 8018128284 417
143 3300046512 Ga0495610_0022691 Ga0495610_0022691_479_1735 418
144 3300046520 Ga0495637_0002299 Ga0495637_0002299_2282_3538 418
145 3300046522 Ga0495643_0003079 Ga0495643_0003079_9198_10454 418
146 3300046674 Ga0495588_0000470 Ga0495588_0000470_9870_11126 418
147 3300046692 Ga0495671_0026784 Ga0495671_0026784_794_2050 418
148 3300053079 Ga0500610_0039304 Ga0500610_0039304_277_1533 418
149 3300003792 Ga0055540_1000103 Ga0055540_1000103101 419
150 3300003856 Ga0058692_1006890 Ga0058692_10068902 419
151 3300025298 Ga0209050_1005009 Ga0209050_10050096 419
152 3300025303 Ga0209051_1000095 Ga0209051_1000095121 419
153 3300025304 Ga0209257_1005427 Ga0209257_10054275 419
154 3300027312 Ga0209371_1000229 Ga0209371_100022931 419
155 3300030500 Ga0268256_1000373 Ga0268256_100037319 419
156 3300037418 Ga0395900_0225654 Ga0395900_0225654_478_1782 419
157 3300037471 Ga0395905_0000758 Ga0395905_0000758_24724_26028 419
158 3300046530 Ga0495654_0000219 Ga0495654_0000219_36458_37738 419
159 3300048927 Ga0496124_0045782 Ga0496124_0045782_1033_2298 419
160 3300053122 Ga0500608_015135 Ga0500608_015135_517_1782 419
161 3300009766 Ga0123342_1002968 Ga0123342_100296812 420
162 3300046507 Ga0495606_0000602 Ga0495606_0000602_43226_44512 420
163 3300046507 Ga0495606_0001724 Ga0495606_0001724_26485_27774 420
164 3300046522 Ga0495643_0000337 Ga0495643_0000337_58822_60111 420
165 3300003322 rootL2_10003580 rootL2_1000358056 421
166 3300025273 Ga0209673_1001187 Ga0209673_100118724 421
167 3300025295 Ga0209564_1000854 Ga0209564_100085416 421
168 3300025299 Ga0209256_1001007 Ga0209256_100100734 421
169 3300041505 Ga0451849_0856144 Ga0451849_0856144_1368_2636 421

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04860

Phage_portal

Phage portal protein

68

395

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
8cez-assembly1.cif.gz_B hk97 portal protein in situ (prohead ii) 0.7087 42 383
3kdr-assembly1.cif.gz_B the crystal structure of a hk97 family phage portal protein from corynebacterium diphtheriae to 2.9a 0.6901 53 349
8fql-assembly1.cif.gz_A portal vertex of hk97 phage 0.6874 48 383
3kdr-assembly1.cif.gz_A the crystal structure of a hk97 family phage portal protein from corynebacterium diphtheriae to 2.9a 0.6825 46 350
3kdr-assembly1.cif.gz_C the crystal structure of a hk97 family phage portal protein from corynebacterium diphtheriae to 2.9a 0.6792 53 350
ID Description Score Start End Superfamily
af_Q8LL17_40_198_2.120.10.80 Mainly Beta;6 Propeller;Neuraminidase;Kelch-type beta propeller 0.6949 138 159 2.120.10.80
af_O53518_307_373_2.60.40.790 Mainly Beta;Sandwich;Immunoglobulin-like; 0.6168 122 165 2.60.40.790
3kdrB02 Alpha Beta;3-Layer(aba) Sandwich;Cytidine Deaminase; domain 2; 0.6156 95 208 3.40.140.120
3d6wB01 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P); 0.5596 125 164 2.40.50.40
3igfB02 Mainly Beta;Sandwich;Immunoglobulin-like; 0.5549 122 177 2.60.40.790
ID Description Score Start End GO Terms
AF-A0A3D4LYZ1-F1-model_v4 deleted 0.8091 45 407
AF-A0A833CK87-F1-model_v4 Phage portal protein 0.8013 37 413
AF-A0A0J5IKG6-F1-model_v4 Portal protein 0.7942 19 204
AF-A0A7I0RE32-F1-model_v4 deleted 0.7931 17 415
AF-A0A7W6P074-F1-model_v4 HK97 family phage portal protein 0.7929 88 401

Feature Viewer

pLDDT pTM Quality
70.2 0.63 Medium
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Predicted Structure (AlphaFold2)

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