F254733

General Info

Members Datasets Scaffolds Average Seq Length
169 102 338 300

Family's Representative Sequence

Representative Sequence 3300013104|Ga0157370_10242970|Ga0157370_102429702
Length 336
Sequence VVARALGEPRGLRALAGAVDALQGEQASHPDLGYGGRMRTLVTGGAGFIGSNLVAALAARGDEIHVLDDLSSGKRERVSDTAALHVADVRSPDEVFDAVRPEIVFHLAAQADVRASVEQPDHDADVNVIGTIRTLEAARRHGARVVFSSTGGAIYGECDSPAGEGAPRRPLAPYGTSKLCGEEYLATWNRLYGSGHVALRLGNVYGPQQEPHGEAGVVAIFMGLLADGGTPKIYGDGRQTRDYVFVADVVDALLRAAGHEGGVYNVGTGTATSVLELYDAIARATGIERAPEHAAPRVGELQRSVLDPSAAERDLGWRATTSLDEGLARTWSWVQE

Samples

Sample ID Description Type Environment
1 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
7 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
8 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
9 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
10 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
11 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
12 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
13 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
14 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
15 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
16 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
17 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
18 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
19 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
20 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
21 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
22 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
23 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
24 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
25 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
26 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
27 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
39 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
40 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
41 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
42 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
43 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
44 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
45 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
46 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
47 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
48 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
49 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
50 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
51 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
52 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
53 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
54 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
55 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
56 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
57 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
58 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
59 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
60 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
61 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
62 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
63 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
64 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
65 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
66 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
67 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
68 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
69 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
70 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
71 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
72 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
73 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
74 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
75 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
76 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
77 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
78 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
79 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
80 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
81 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
82 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
83 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
84 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
85 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
86 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
87 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
88 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
90 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
91 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
92 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
93 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
94 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
95 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
96 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
97 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
98 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
99 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
100 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
101 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
102 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 97.63
Metatranscriptomes 2.37
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 9.47
Rhizosphere 90.53
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0157370_10242970 3300013104 Bacteria 1666
2 Ga0070683_100007871 3300005329 Bacteria 9029
3 Ga0070680_100063836 3300005336 Bacteria 3017
4 Ga0070680_100262190 3300005336 Bacteria 1462
5 Ga0070682_100047119 3300005337 Bacteria 2679
6 Ga0070660_100001426 3300005339 Bacteria 16288
7 Ga0070660_100010505 3300005339 Bacteria 6541
8 Ga0070661_100010563 3300005344 Bacteria 6420
9 Ga0070659_100056945 3300005366 Bacteria 3082
10 Ga0070709_10055214 3300005434 Bacteria 2507
11 Ga0070714_100004275 3300005435 Bacteria 10761
12 Ga0070714_100106165 3300005435 Bacteria 2481
13 Ga0070714_100202060 3300005435 Bacteria 1818
14 Ga0070713_100158109 3300005436 Bacteria 2021
15 Ga0070681_10025565 3300005458 Bacteria 5940
16 Ga0070706_100341186 3300005467 Bacteria 1397
17 Ga0070679_100027106 3300005530 Bacteria 5635
18 Ga0070679_100174162 3300005530 Bacteria 2124
19 Ga0070684_100023564 3300005535 Bacteria 5152
20 Ga0070684_100154420 3300005535 Bacteria 2081
21 Ga0070665_100001058 3300005548 Bacteria 34437
22 Ga0068856_100376377 3300005614 Bacteria 1439
23 Ga0068852_100131275 3300005616 Bacteria 2307
24 Ga0068852_100289884 3300005616 Bacteria 1581
25 Ga0081455_10134543 3300005937 Bacteria 1928
26 Ga0081539_10000062 3300005985 Bacteria 249871
27 Ga0081539_10001368 3300005985 Bacteria 42269
28 Ga0081539_10017462 3300005985 Bacteria 5035
29 Ga0105240_10172937 3300009093 Bacteria 2556
30 Ga0105240_10198090 3300009093 Bacteria 2356
31 Ga0157369_10007357 3300013105 Bacteria 12679
32 Ga0157369_10182452 3300013105 Bacteria 2208
33 Ga0157369_10380615 3300013105 Bacteria 1465
34 Ga0182008_10006913 3300014497 Bacteria 6300
35 Ga0182006_1060633 3300015261 Bacteria 1429
36 Ga0206356_10702259 3300020070 Bacteria 2511
37 Ga0206354_10886014 3300020081 Bacteria 1456
38 Ga0206353_11056416 3300020082 Bacteria 3208
39 Ga0206353_11253055 3300020082 Bacteria 5073
40 Ga0207699_10068830 3300025906 Bacteria 2156
41 Ga0207699_10096494 3300025906 Bacteria 1867
42 Ga0207707_10047182 3300025912 Bacteria 3752
43 Ga0207660_10053611 3300025917 Bacteria 2875
44 Ga0207657_10011008 3300025919 Bacteria 8992
45 Ga0207657_10023336 3300025919 Bacteria 5762
46 Ga0207657_10158630 3300025919 Bacteria 1838
47 Ga0207649_10090118 3300025920 Bacteria 2006
48 Ga0207700_10029583 3300025928 Bacteria 3867
49 Ga0207664_10005037 3300025929 Bacteria 8989
50 Ga0207664_10049677 3300025929 Bacteria 3304
51 Ga0207664_10092238 3300025929 Bacteria 2486
52 Ga0207664_10097953 3300025929 Bacteria 2417
53 Ga0207661_10017055 3300025944 Bacteria 5365
54 Ga0207667_10296784 3300025949 Bacteria 1651
55 Ga0207678_10321951 3300026067 Bacteria 1330
56 Ga0268266_10014330 3300028379 Bacteria 6817
57 Ga0265319_1003023 3300028563 Bacteria 8928
58 Ga0265334_10010597 3300028573 Bacteria 3891
59 Ga0265334_10032606 3300028573 Bacteria 2077
60 Ga0265318_10004818 3300028577 Bacteria 6457
61 Ga0265318_10005229 3300028577 Bacteria 6117
62 Ga0265322_10015337 3300028654 Bacteria 2214
63 Ga0265322_10039258 3300028654 Bacteria 1346
64 Ga0265338_10002153 3300028800 Bacteria 30260
65 Ga0265338_10045005 3300028800 Bacteria 4065
66 Ga0265338_10077200 3300028800 Bacteria 2816
67 Ga0265330_10012404 3300031235 Bacteria 3986
68 Ga0265332_10013867 3300031238 Bacteria 3568
69 Ga0265328_10003734 3300031239 Bacteria 6710
70 Ga0265320_10015318 3300031240 Bacteria 4338
71 Ga0265320_10036364 3300031240 Bacteria 2489
72 Ga0265325_10017325 3300031241 Bacteria 4006
73 Ga0265329_10010107 3300031242 Bacteria 3482
74 Ga0265340_10011353 3300031247 Bacteria 4735
75 Ga0265340_10023873 3300031247 Bacteria 3112
76 Ga0265339_10124304 3300031249 Bacteria 1323
77 Ga0265331_10009593 3300031250 Bacteria 5424
78 Ga0265327_10041211 3300031251 Bacteria 2490
79 Ga0265327_10098271 3300031251 Bacteria 1416
80 Ga0265316_10033517 3300031344 Bacteria 4181
81 Ga0265316_10040342 3300031344 Bacteria 3742
82 Ga0265313_10014826 3300031595 Bacteria 4580
83 Ga0265314_10010900 3300031711 Bacteria 7556
84 Ga0265314_10063345 3300031711 Bacteria 2508
85 Ga0265342_10018577 3300031712 Bacteria 4499
86 Ga0265342_10020242 3300031712 Bacteria 4273
87 Ga0307416_100361622 3300032002 Bacteria 1474
88 Ga0395899_0008353 3300037312 Bacteria 7971
89 Ga0395899_0033698 3300037312 Bacteria 3846
90 Ga0395899_0064985 3300037312 Bacteria 2682
91 Ga0395900_0001291 3300037418 Bacteria 30553
92 Ga0395900_0008849 3300037418 Bacteria 10335
93 Ga0395900_0130849 3300037418 Bacteria 2572
94 Ga0395900_0170307 3300037418 Bacteria 2217
95 Ga0395898_0077988 3300037466 Bacteria 3197
96 Ga0395898_0124736 3300037466 Bacteria 2467
97 Ga0395898_0135644 3300037466 Bacteria 2356
98 Ga0395898_0221097 3300037466 Bacteria 1806
99 Ga0395905_0003416 3300037471 Bacteria 16983
100 Ga0395905_0075412 3300037471 Bacteria 3161
101 Ga0395905_0112734 3300037471 Bacteria 2554
102 Ga0395901_0000365 3300038443 Bacteria 54535
103 Ga0395901_0042613 3300038443 Bacteria 4707
104 Ga0395901_0159828 3300038443 Bacteria 2366
105 Ga0395901_0229477 3300038443 Bacteria 1938
106 Ga0395901_0264208 3300038443 Bacteria 1791
107 Ga0466963_0006968 3300044694 Bacteria 6725
108 Ga0466963_0018950 3300044694 Bacteria 4308
109 Ga0466963_0037635 3300044694 Bacteria 3160
110 Ga0466963_0038245 3300044694 Bacteria 3137
111 Ga0466963_0083664 3300044694 Bacteria 2164
112 Ga0466963_0335921 3300044694 Bacteria 1064
113 Ga0466959_0016634 3300045049 Bacteria 5378
114 Ga0466958_0060743 3300045836 Bacteria 2301
115 Ga0466958_0091766 3300045836 Bacteria 1880
116 Ga0466967_0006852 3300045976 Bacteria 8130
117 Ga0466967_0041471 3300045976 Bacteria 3969
118 Ga0466967_0100212 3300045976 Bacteria 2646
119 Ga0466967_0119137 3300045976 Bacteria 2436
120 Ga0466967_0142078 3300045976 Bacteria 2237
121 Ga0466967_0182261 3300045976 Bacteria 1981
122 Ga0466967_0436391 3300045976 Bacteria 1278
123 Ga0495629_0024417 3300046459 Bacteria 4305
124 Ga0495641_0093333 3300046461 Bacteria 1345
125 Ga0495630_0032807 3300046517 Bacteria 3871
126 Ga0495667_0047253 3300046559 Bacteria 2844
127 Ga0495667_0165371 3300046559 Bacteria 1422
128 Ga0495656_0166057 3300046615 Bacteria 1076
129 Ga0495634_0078590 3300046642 Bacteria 2161
130 Ga0495674_0025251 3300047319 Bacteria 5451
131 Ga0495680_0066594 3300047322 Bacteria 2756
132 Ga0495684_0272183 3300047471 Bacteria 1225
133 Ga0496101_0163385 3300048904 Bacteria 1709
134 Ga0496102_0099892 3300048905 Bacteria 2694
135 Ga0496104_0024453 3300048907 Bacteria 5555
136 Ga0496105_0005738 3300048908 Bacteria 9454
137 Ga0496106_0010099 3300048909 Bacteria 6973
138 Ga0496107_0012207 3300048910 Bacteria 5994
139 Ga0496108_0185443 3300048911 Bacteria 1802
140 Ga0496109_0108995 3300048912 Bacteria 2574
141 Ga0496110_0014521 3300048913 Bacteria 6544
142 Ga0496110_0123660 3300048913 Bacteria 2333
143 Ga0496111_0232487 3300048914 Bacteria 1369
144 Ga0496111_0414467 3300048914 Bacteria 995
145 Ga0496112_0039149 3300048915 Bacteria 4631
146 Ga0496112_0114287 3300048915 Bacteria 2670
147 Ga0496112_0183228 3300048915 Bacteria 2058
148 Ga0496113_0145155 3300048916 Bacteria 1869
149 Ga0501034_0006432 3300049571 Bacteria 12649
150 Ga0501069_0020772 3300049585 Bacteria 3560
151 Ga0501069_0048466 3300049585 Bacteria 2359
152 Ga0501070_0017126 3300049586 Bacteria 6082
153 Ga0501072_0021931 3300049588 Bacteria 4955
154 Ga0501072_0123600 3300049588 Bacteria 2062
155 Ga0501073_0015874 3300049589 Bacteria 5458
156 Ga0501073_0033985 3300049589 Bacteria 3630
157 Ga0501074_0024151 3300049590 Bacteria 4417
158 Ga0501074_0098121 3300049590 Bacteria 2097
159 Ga0501074_0325537 3300049590 Bacteria 1091
160 Ga0501077_0079556 3300049593 Bacteria 2077
161 Ga0501080_0011038 3300049742 Bacteria 8267
162 Ga0501080_0036851 3300049742 Bacteria 4565
163 Ga0501083_0010428 3300049744 Bacteria 6540
164 Ga0501045_0031761 3300049824 Bacteria 3825
165 nmdc:mga0n895_218704_c1 3300050512 Bacteria 1934
166 Ga0495619_0017631 3300053085 Bacteria 4523
167 Ga0501084_0087856 3300054114 Bacteria 2610
168 Ga0501082_0083453 3300060353 Bacteria 2757
169 Ga0466962_0047547 3300061719 Bacteria 2050
170 Ga0157370_10242970
171 Ga0070683_100007871
172 Ga0070680_100063836
173 Ga0070680_100262190
174 Ga0070682_100047119
175 Ga0070660_100001426
176 Ga0070660_100010505
177 Ga0070661_100010563
178 Ga0070659_100056945
179 Ga0070709_10055214
180 Ga0070714_100004275
181 Ga0070714_100106165
182 Ga0070714_100202060
183 Ga0070713_100158109
184 Ga0070681_10025565
185 Ga0070706_100341186
186 Ga0070679_100027106
187 Ga0070679_100174162
188 Ga0070684_100023564
189 Ga0070684_100154420
190 Ga0070665_100001058
191 Ga0068856_100376377
192 Ga0068852_100131275
193 Ga0068852_100289884
194 Ga0081455_10134543
195 Ga0081539_10000062
196 Ga0081539_10001368
197 Ga0081539_10017462
198 Ga0105240_10172937
199 Ga0105240_10198090
200 Ga0157369_10007357
201 Ga0157369_10182452
202 Ga0157369_10380615
203 Ga0182008_10006913
204 Ga0182006_1060633
205 Ga0206356_10702259
206 Ga0206354_10886014
207 Ga0206353_11056416
208 Ga0206353_11253055
209 Ga0207699_10068830
210 Ga0207699_10096494
211 Ga0207707_10047182
212 Ga0207660_10053611
213 Ga0207657_10011008
214 Ga0207657_10023336
215 Ga0207657_10158630
216 Ga0207649_10090118
217 Ga0207700_10029583
218 Ga0207664_10005037
219 Ga0207664_10049677
220 Ga0207664_10092238
221 Ga0207664_10097953
222 Ga0207661_10017055
223 Ga0207667_10296784
224 Ga0207678_10321951
225 Ga0268266_10014330
226 Ga0265319_1003023
227 Ga0265334_10010597
228 Ga0265334_10032606
229 Ga0265318_10004818
230 Ga0265318_10005229
231 Ga0265322_10015337
232 Ga0265322_10039258
233 Ga0265338_10002153
234 Ga0265338_10045005
235 Ga0265338_10077200
236 Ga0265330_10012404
237 Ga0265332_10013867
238 Ga0265328_10003734
239 Ga0265320_10015318
240 Ga0265320_10036364
241 Ga0265325_10017325
242 Ga0265329_10010107
243 Ga0265340_10011353
244 Ga0265340_10023873
245 Ga0265339_10124304
246 Ga0265331_10009593
247 Ga0265327_10041211
248 Ga0265327_10098271
249 Ga0265316_10033517
250 Ga0265316_10040342
251 Ga0265313_10014826
252 Ga0265314_10010900
253 Ga0265314_10063345
254 Ga0265342_10018577
255 Ga0265342_10020242
256 Ga0307416_100361622
257 Ga0395899_0008353
258 Ga0395899_0033698
259 Ga0395899_0064985
260 Ga0395900_0001291
261 Ga0395900_0008849
262 Ga0395900_0130849
263 Ga0395900_0170307
264 Ga0395898_0077988
265 Ga0395898_0124736
266 Ga0395898_0135644
267 Ga0395898_0221097
268 Ga0395905_0003416
269 Ga0395905_0075412
270 Ga0395905_0112734
271 Ga0395901_0000365
272 Ga0395901_0042613
273 Ga0395901_0159828
274 Ga0395901_0229477
275 Ga0395901_0264208
276 Ga0466963_0006968
277 Ga0466963_0018950
278 Ga0466963_0037635
279 Ga0466963_0038245
280 Ga0466963_0083664
281 Ga0466963_0335921
282 Ga0466959_0016634
283 Ga0466958_0060743
284 Ga0466958_0091766
285 Ga0466967_0006852
286 Ga0466967_0041471
287 Ga0466967_0100212
288 Ga0466967_0119137
289 Ga0466967_0142078
290 Ga0466967_0182261
291 Ga0466967_0436391
292 Ga0495629_0024417
293 Ga0495641_0093333
294 Ga0495630_0032807
295 Ga0495667_0047253
296 Ga0495667_0165371
297 Ga0495656_0166057
298 Ga0495634_0078590
299 Ga0495674_0025251
300 Ga0495680_0066594
301 Ga0495684_0272183
302 Ga0496101_0163385
303 Ga0496102_0099892
304 Ga0496104_0024453
305 Ga0496105_0005738
306 Ga0496106_0010099
307 Ga0496107_0012207
308 Ga0496108_0185443
309 Ga0496109_0108995
310 Ga0496110_0014521
311 Ga0496110_0123660
312 Ga0496111_0232487
313 Ga0496111_0414467
314 Ga0496112_0039149
315 Ga0496112_0114287
316 Ga0496112_0183228
317 Ga0496113_0145155
318 Ga0501034_0006432
319 Ga0501069_0020772
320 Ga0501069_0048466
321 Ga0501070_0017126
322 Ga0501072_0021931
323 Ga0501072_0123600
324 Ga0501073_0015874
325 Ga0501073_0033985
326 Ga0501074_0024151
327 Ga0501074_0098121
328 Ga0501074_0325537
329 Ga0501077_0079556
330 Ga0501080_0011038
331 Ga0501080_0036851
332 Ga0501083_0010428
333 Ga0501045_0031761
334 nmdc:mga0n895_218704_c1
335 Ga0495619_0017631
336 Ga0501084_0087856
337 Ga0501082_0083453
338 Ga0466962_0047547

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

40

267

0.96

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

41

330

0.89

PF04321

RmlD_sub_bind

RmlD substrate binding domain

38

329

0.88

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

41

259

0.82

PF02719

Polysacc_synt_2

Polysaccharide biosynthesis protein

40

302

0.81

PF07993

NAD_binding_4

Male sterility protein

92

253

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
4zrn-assembly1.cif.gz_B crystal structure of udp-glucose 4-epimerase (tm0509) with udp-glucose from hyperthermophilic eubacterium thermotoga maritima 0.9735 1 298
4zrn-assembly1.cif.gz_B crystal structure of udp-glucose 4-epimerase (tm0509) with udp-glucose from hyperthermophilic eubacterium thermotoga maritima 0.9671 1 298
7ys8-assembly1.cif.gz_B crystal structure of udp-glucose 4-epimerase (rv3634c) from mycobacterium tuberculosis 0.9583 1 298
7ys9-assembly1.cif.gz_B crystal structure of udp-glucose 4-epimerase (rv3634c) in complex with both udp-glucose and udp-galactose in chaina from mycobacterium tuberculosis 0.9568 1 298
6pnl-assembly1.cif.gz_A structure of epimerase mth375 from the thermophilic pseudomurein-containing methanogen methanothermobacter thermautotrophicus 0.9527 3 298
ID Description Score Start End Superfamily
af_Q2G289_4_319_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9447 2 299 3.40.50.720
af_Q2G289_4_319_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9386 2 299 3.40.50.720
2p5yA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9384 1 230 3.40.50.720
2p5yA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9339 1 230 3.40.50.720
4zrmB02 Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 0.9332 169 298 3.90.25.10
ID Description Score Start End GO Terms
AF-A0A7Y5UY64-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9812 1 297
AF-A0A554L5P3-F1-model_v4 UDP-glucose 4-epimerase 0.9788 1 299
AF-A0A829I4J9-F1-model_v4 deleted 0.9782 137 298
AF-A0A7V6WK92-F1-model_v4 NAD-dependent epimerase/dehydratase family protein 0.9756 3 299
AF-A0A554L5P3-F1-model_v4 UDP-glucose 4-epimerase 0.9756 1 299

Map