F253711

General Info

Members Datasets Scaffolds Average Seq Length
168 124 153 276

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2919395869|2919396379
Length 297
Sequence FRQVDVFGEQAMAGNPVAVVLDAEGIGDEEMRKFSVWSNLSECTFVLPPSEPGADYRVRIFSLSVELPFAGHPTLGTARAWLDAGGVPATPGTIVQECAAGLIPVRIDGELLSFRAPQRIRSGAVDPELLAAVVSILGADPGAVVDAEWLDNGPGWIGVLLDRAETVLGLRPDSSRHPGRWDIGVIGAHGQESETDFELRAFFTDGDSALREDPVTGSLNAAAAQWLVETERATLPYTASQGGAMGRNGRIHLSGNEGSIWVGGRTDVVLAGTADLLPAGLLPVERLGGSVERGAGS

Samples

Sample ID Description Type Environment
1 2515154202 Salinispora pacifica CNT084 Isolate Rhizosphere
2 2527291627 Frankia casuarinae Thr Isolate Nodule
3 2527291629 Frankia sp. BMG5.23 Isolate Nodule
4 2546825537 Frankia sp. CcI6 Isolate Rhizoplane
5 2554235227 Arthrobacter sp. PAO19 Isolate Rhizosphere
6 2576861822 Frankia sp. CeD Isolate Nodule
7 2654587600 Glutamicibacter halophytocola KLBMP5180 Isolate Unclassified
8 2684623036 Frankia sp. CgIM4 Isolate Nodule
9 2710264753 Frankia sp. KB5 Isolate Nodule
10 2773857924 Frankia sp. CgIS1 Isolate Nodule
11 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
12 2919051321 Sinomonas atrocyanea 1003 Isolate Rhizosphere
13 2919395869 Microbacterium resistens 2980 Isolate Unclassified
14 2946024296 Arthrobacter woluwensis W4I2 Isolate Rhizosphere
15 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
16 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
17 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
18 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
19 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
20 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
21 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
22 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
23 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
24 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
25 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
26 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
29 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
30 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
31 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
32 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
33 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
34 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
35 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
36 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
37 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
38 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
39 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
41 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
42 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
43 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
44 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
45 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
46 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
47 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
48 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
49 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
50 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
51 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
52 3300025899 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300027614 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant Co S AM (SPAdes) (version 2) Metagenome Rhizosphere
72 3300027665 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M1 S PM (SPAdes) (version 2) Metagenome Rhizosphere
73 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
76 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
77 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
78 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
79 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
80 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
81 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
82 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
83 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
84 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
85 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
86 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
87 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
88 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
89 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
90 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
91 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
92 3300042437 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z081617_5554 Metagenome Rhizosphere
93 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
94 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
95 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
96 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
97 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
98 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
99 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
100 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
101 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
102 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
103 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
104 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
105 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
106 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
107 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
108 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
109 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
110 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
112 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
113 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
114 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
115 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
116 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
117 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
118 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
119 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
120 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
121 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
122 3300053133 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co2_41_10 endosphere Metagenome Endosphere
123 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
124 637000116 Frankia casuarinae CcI3 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 91.07
Metatranscriptomes 0
Isolates 8.93

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 7.14
Nodule 4.17
Rhizoplane 7.14
Rhizosphere 77.98
Stem 0
Stem Tuber 0
Unclassified 3.57

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootL2_10101970 3300003322 Bacteria 2009
2 Ga0055543_1008264 3300004625 Bacteria 2317
3 Ga0065165_1000823 3300005262 Bacteria 41031
4 Ga0070660_100553484 3300005339 Unclassified 960
5 Ga0070689_100059618 3300005340 Bacteria 2966
6 Ga0070668_100102307 3300005347 Bacteria 2271
7 Ga0070674_100032020 3300005356 Bacteria 3490
8 Ga0070688_100228652 3300005365 Bacteria 1315
9 Ga0070701_10109901 3300005438 Bacteria 1539
10 Ga0070686_100000013 3300005544 Bacteria 169327
11 Ga0070665_100682915 3300005548 Bacteria 1040
12 Ga0070704_100247641 3300005549 Bacteria 1462
13 Ga0068852_100116419 3300005616 Bacteria 2439
14 Ga0068861_100012313 3300005719 Bacteria 5965
15 Ga0068861_100031340 3300005719 Bacteria 3905
16 Ga0068861_100038232 3300005719 Bacteria 3572
17 Ga0068858_100058655 3300005842 Bacteria 3559
18 Ga0081455_10000377 3300005937 Bacteria 59204
19 Ga0081455_10007367 3300005937 Bacteria 11599
20 Ga0081455_10023183 3300005937 Bacteria 5781
21 Ga0081455_10026444 3300005937 Bacteria 5336
22 Ga0081455_10026494 3300005937 Bacteria 5329
23 Ga0081455_10039593 3300005937 Bacteria 4164
24 Ga0081455_10055578 3300005937 Bacteria 3366
25 Ga0081538_10000614 3300005981 Bacteria 39533
26 Ga0075365_10006186 3300006038 Bacteria 6559
27 Ga0075364_10155275 3300006051 Bacteria 1543
28 Ga0075432_10001643 3300006058 Bacteria 7361
29 Ga0075431_100435781 3300006847 Bacteria 1308
30 Ga0075433_10022306 3300006852 Bacteria 5314
31 Ga0075434_100061870 3300006871 Bacteria 3725
32 Ga0075435_100022355 3300007076 Bacteria 4880
33 Ga0075435_100372734 3300007076 Bacteria 1226
34 Ga0111539_10250784 3300009094 Bacteria 2061
35 Ga0105245_10102184 3300009098 Bacteria 2654
36 Ga0105245_10165493 3300009098 Bacteria 2102
37 Ga0105245_10255707 3300009098 Bacteria 1703
38 Ga0114129_10580523 3300009147 Bacteria 1455
39 Ga0105243_10085983 3300009148 Bacteria 2579
40 Ga0105242_10025413 3300009176 Bacteria 4687
41 Ga0105242_10595695 3300009176 Bacteria 1067
42 Ga0105249_10045339 3300009553 Bacteria 3999
43 Ga0105239_10176255 3300010375 Unclassified 2391
44 Ga0105246_10084694 3300011119 Bacteria 2269
45 Ga0157369_10010008 3300013105 Bacteria 10829
46 Ga0171462_1005 3300013250 Bacteria 598379
47 Ga0157374_10362220 3300013296 Bacteria 1442
48 Ga0157375_10059806 3300013308 Bacteria 3776
49 Ga0157380_10236228 3300014326 Bacteria 1645
50 Ga0207642_10040502 3300025899 Bacteria 2033
51 Ga0207688_10110574 3300025901 Unclassified 1595
52 Ga0207643_10009574 3300025908 Bacteria 5205
53 Ga0207662_10290967 3300025918 Bacteria 1083
54 Ga0207681_10133491 3300025923 Bacteria 1839
55 Ga0207650_10031996 3300025925 Bacteria 3804
56 Ga0207690_10021076 3300025932 Bacteria 4037
57 Ga0207706_10093314 3300025933 Bacteria 2647
58 Ga0207709_10022410 3300025935 Bacteria 3583
59 Ga0207670_10171610 3300025936 Bacteria 1627
60 Ga0207669_10308642 3300025937 Bacteria 1206
61 Ga0207691_10329734 3300025940 Bacteria 1308
62 Ga0207661_10186283 3300025944 Bacteria 1817
63 Ga0207679_10424081 3300025945 Bacteria 1175
64 Ga0207668_10064751 3300025972 Bacteria 2585
65 Ga0207677_10134067 3300026023 Bacteria 1885
66 Ga0207708_10088606 3300026075 Bacteria 2384
67 Ga0207708_10325011 3300026075 Bacteria 1256
68 Ga0207675_100009426 3300026118 Bacteria 9138
69 Ga0207675_100055037 3300026118 Bacteria 3712
70 Ga0207675_100117430 3300026118 Bacteria 2515
71 Ga0207698_10056933 3300026142 Bacteria 3021
72 Ga0207698_10095966 3300026142 Bacteria 2442
73 Ga0209970_1000272 3300027614 Bacteria 8541
74 Ga0209983_1027376 3300027665 Bacteria 1207
75 Ga0268266_10672323 3300028379 Bacteria 997
76 Ga0268265_10218483 3300028380 Bacteria 1666
77 Ga0307408_100059950 3300031548 Bacteria 2772
78 Ga0307408_100093192 3300031548 Bacteria 2278
79 Ga0307408_100206914 3300031548 Bacteria 1592
80 Ga0307405_10024165 3300031731 Bacteria 3467
81 Ga0307405_10195572 3300031731 Bacteria 1464
82 Ga0307413_10141636 3300031824 Bacteria 1662
83 Ga0307410_10020514 3300031852 Bacteria 4043
84 Ga0307410_10021738 3300031852 Bacteria 3951
85 Ga0307410_10145653 3300031852 Bacteria 1757
86 Ga0307406_10000550 3300031901 Bacteria 21605
87 Ga0307406_10004909 3300031901 Bacteria 7285
88 Ga0307406_10007991 3300031901 Bacteria 5893
89 Ga0307406_10036307 3300031901 Bacteria 3035
90 Ga0307407_10039095 3300031903 Bacteria 2635
91 Ga0307412_10079249 3300031911 Bacteria 2265
92 Ga0307412_10124880 3300031911 Bacteria 1859
93 Ga0307409_100000001 3300031995 Bacteria 93927
94 Ga0307409_100001875 3300031995 Bacteria 10711
95 Ga0307409_100006966 3300031995 Bacteria 6714
96 Ga0307409_100388881 3300031995 Bacteria 1328
97 Ga0307416_100018034 3300032002 Bacteria 4959
98 Ga0307416_100038535 3300032002 Bacteria 3688
99 Ga0307416_100045527 3300032002 Bacteria 3455
100 Ga0307414_10007605 3300032004 Bacteria 6095
101 Ga0307414_10021957 3300032004 Bacteria 4017
102 Ga0307414_10136355 3300032004 Bacteria 1914
103 Ga0307411_10001291 3300032005 Bacteria 10052
104 Ga0307411_10003858 3300032005 Bacteria 7062
105 Ga0307411_10018328 3300032005 Bacteria 4013
106 Ga0307415_100000176 3300032126 Bacteria 28510
107 Ga0307415_100125960 3300032126 Bacteria 1930
108 Ga0307415_100202510 3300032126 Bacteria 1576
109 Ga0307415_100488569 3300032126 Bacteria 1074
110 Ga0395899_0014781 3300037312 Bacteria 5958
111 Ga0395898_0054969 3300037466 Bacteria 3883
112 Ga0395901_0063304 3300038443 Bacteria 3849
113 Ga0400483_069070 3300039062 Bacteria 10951
114 Ga0400483_229239 3300039062 Bacteria 19584
115 Ga0439463_004031 3300042016 Bacteria 3693
116 Ga0439444_0018648 3300042437 Bacteria 1203
117 Ga0439440_0001198 3300042993 Bacteria 4656
118 Ga0453684_0432749 3300044712 Bacteria 1467
119 Ga0451576_0293339 3300045051 Bacteria 1700
120 Ga0495631_0060150 3300046518 Bacteria 1649
121 Ga0495643_0000187 3300046522 Bacteria 99364
122 Ga0495656_0343579 3300046615 Bacteria 772
123 Ga0495661_0188269 3300046665 Bacteria 1089
124 Ga0495671_0061700 3300046692 Bacteria 1849
125 Ga0495660_0127558 3300046810 Unclassified 1280
126 Ga0496108_0010378 3300048911 Bacteria 7564
127 Ga0496108_0329830 3300048911 Bacteria 1331
128 Ga0496109_0026701 3300048912 Bacteria 5151
129 Ga0496109_0080700 3300048912 Bacteria 2997
130 Ga0496110_0110069 3300048913 Bacteria 2474
131 Ga0496111_0077146 3300048914 Bacteria 2429
132 Ga0496112_0295947 3300048915 Bacteria 1564
133 Ga0496113_0052094 3300048916 Bacteria 3055
134 Ga0496114_0181296 3300048917 Bacteria 1839
135 Ga0496114_0288085 3300048917 Bacteria 1449
136 Ga0496114_0337612 3300048917 Bacteria 1332
137 Ga0496126_0397816 3300048929 Bacteria 1118
138 Ga0501040_0177265 3300049576 Bacteria 1510
139 Ga0501042_0297492 3300049578 Bacteria 1166
140 Ga0501074_0220752 3300049590 Bacteria 1350
141 Ga0501075_0355606 3300049591 Bacteria 1116
142 Ga0501076_0497416 3300049592 Bacteria 1005
143 Ga0501045_0092178 3300049824 Bacteria 2241
144 nmdc:mga00v17_220178_c1 3300050491 Bacteria 1229
145 nmdc:mga00v17_70747_c1 3300050491 Bacteria 2161
146 nmdc:mga0yw44_179831_c1 3300050492 Bacteria 1392
147 nmdc:mga08y16_58688_c1 3300050511 Bacteria 4021
148 nmdc:mga0n895_81154_c1 3300050512 Bacteria 3232
149 Ga0500556_0000133 3300053104 Bacteria 63387
150 Ga0500628_001437 3300053129 Bacteria 4079
151 Ga0500655_000640 3300053133 Bacteria 7012
152 Ga0500559_0000534 3300053136 Bacteria 26496
153 Ga0500559_0014847 3300053136 Bacteria 3290

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2527291627 2528206868 235
2 iso_pu_bacteria 637000116 637879300 235
3 3300046615 Ga0495656_0343579 Ga0495656_0343579_12_746 243
4 3300049592 Ga0501076_0497416 Ga0501076_0497416_96_950 253
5 3300049576 Ga0501040_0177265 Ga0501040_0177265_480_1334 255
6 3300049578 Ga0501042_0297492 Ga0501042_0297492_164_1018 255
7 3300049590 Ga0501074_0220752 Ga0501074_0220752_261_1115 255
8 3300049591 Ga0501075_0355606 Ga0501075_0355606_85_939 255
9 3300006038 Ga0075365_10006186 Ga0075365_100061863 257
10 3300050492 nmdc:mga0yw44_179831_c1 nmdc:mga0yw44_179831_c1_462_1271 257
11 3300053104 Ga0500556_0000133 Ga0500556_0000133_5347_6156 257
12 3300053133 Ga0500655_000640 Ga0500655_000640_857_1666 257
13 3300048912 Ga0496109_0080700 Ga0496109_0080700_1491_2291 262
14 3300005937 Ga0081455_10000377 Ga0081455_1000037720 263
15 3300053136 Ga0500559_0000534 Ga0500559_0000534_5297_6136 267
16 3300027614 Ga0209970_1000272 Ga0209970_10002727 268
17 3300027665 Ga0209983_1027376 Ga0209983_10273762 268
18 iso_pu_bacteria 2527291629 2528214428 271
19 iso_pu_bacteria 2546825537 2546949850 271
20 iso_pu_bacteria 2576861822 2579751085 271
21 iso_pu_bacteria 2684623036 2686543744 271
22 iso_pu_bacteria 2710264753 2710604137 271
23 iso_pu_bacteria 2773857924 2774865155 271
24 3300005340 Ga0070689_100059618 Ga0070689_1000596183 272
25 3300005365 Ga0070688_100228652 Ga0070688_1002286522 272
26 3300005438 Ga0070701_10109901 Ga0070701_101099012 272
27 3300005548 Ga0070665_100682915 Ga0070665_1006829151 272
28 3300005549 Ga0070704_100247641 Ga0070704_1002476412 272
29 3300005719 Ga0068861_100012313 Ga0068861_1000123133 272
30 3300005719 Ga0068861_100031340 Ga0068861_1000313404 272
31 3300005842 Ga0068858_100058655 Ga0068858_1000586552 272
32 3300007076 Ga0075435_100372734 Ga0075435_1003727342 272
33 3300009098 Ga0105245_10165493 Ga0105245_101654932 272
34 3300009098 Ga0105245_10255707 Ga0105245_102557072 272
35 3300009148 Ga0105243_10085983 Ga0105243_100859832 272
36 3300009176 Ga0105242_10595695 Ga0105242_105956951 272
37 3300009553 Ga0105249_10045339 Ga0105249_100453392 272
38 3300011119 Ga0105246_10084694 Ga0105246_100846942 272
39 3300013296 Ga0157374_10362220 Ga0157374_103622202 272
40 3300013308 Ga0157375_10059806 Ga0157375_100598065 272
41 3300014326 Ga0157380_10236228 Ga0157380_102362282 272
42 3300025899 Ga0207642_10040502 Ga0207642_100405023 272
43 3300025908 Ga0207643_10009574 Ga0207643_100095745 272
44 3300025918 Ga0207662_10290967 Ga0207662_102909672 272
45 3300025923 Ga0207681_10133491 Ga0207681_101334912 272
46 3300025925 Ga0207650_10031996 Ga0207650_100319965 272
47 3300025932 Ga0207690_10021076 Ga0207690_100210763 272
48 3300025933 Ga0207706_10093314 Ga0207706_100933142 272
49 3300025935 Ga0207709_10022410 Ga0207709_100224104 272
50 3300025936 Ga0207670_10171610 Ga0207670_101716102 272
51 3300025940 Ga0207691_10329734 Ga0207691_103297341 272
52 3300025944 Ga0207661_10186283 Ga0207661_101862832 272
53 3300025945 Ga0207679_10424081 Ga0207679_104240811 272
54 3300025972 Ga0207668_10064751 Ga0207668_100647512 272
55 3300026075 Ga0207708_10088606 Ga0207708_100886063 272
56 3300026118 Ga0207675_100055037 Ga0207675_1000550372 272
57 3300026118 Ga0207675_100117430 Ga0207675_1001174302 272
58 3300026142 Ga0207698_10056933 Ga0207698_100569332 272
59 3300028379 Ga0268266_10672323 Ga0268266_106723231 272
60 3300028380 Ga0268265_10218483 Ga0268265_102184832 272
61 3300048911 Ga0496108_0010378 Ga0496108_0010378_1883_2716 272
62 3300048912 Ga0496109_0026701 Ga0496109_0026701_1928_2761 272
63 3300048913 Ga0496110_0110069 Ga0496110_0110069_91_924 272
64 3300048914 Ga0496111_0077146 Ga0496111_0077146_203_1033 272
65 3300048915 Ga0496112_0295947 Ga0496112_0295947_356_1189 272
66 3300048916 Ga0496113_0052094 Ga0496113_0052094_244_1077 272
67 3300048917 Ga0496114_0181296 Ga0496114_0181296_855_1688 272
68 iso_pu_bacteria 2919051321 2919053068 272
69 3300006051 Ga0075364_10155275 Ga0075364_101552752 273
70 iso_pu_bacteria 2515154202 2516086954 273
71 3300005937 Ga0081455_10026444 Ga0081455_100264443 274
72 3300005937 Ga0081455_10023183 Ga0081455_100231833 275
73 3300048917 Ga0496114_0337612 Ga0496114_0337612_277_1110 275
74 iso_pu_bacteria 2870628048 2870628749 275
75 3300005339 Ga0070660_100553484 Ga0070660_1005534841 276
76 3300005347 Ga0070668_100102307 Ga0070668_1001023072 276
77 3300005356 Ga0070674_100032020 Ga0070674_1000320202 276
78 3300005616 Ga0068852_100116419 Ga0068852_1001164193 276
79 3300005719 Ga0068861_100038232 Ga0068861_1000382323 276
80 3300005937 Ga0081455_10007367 Ga0081455_100073676 276
81 3300005937 Ga0081455_10026494 Ga0081455_100264942 276
82 3300005937 Ga0081455_10039593 Ga0081455_100395933 276
83 3300005937 Ga0081455_10055578 Ga0081455_100555783 276
84 3300005981 Ga0081538_10000614 Ga0081538_1000061430 276
85 3300006847 Ga0075431_100435781 Ga0075431_1004357812 276
86 3300009094 Ga0111539_10250784 Ga0111539_102507842 276
87 3300009098 Ga0105245_10102184 Ga0105245_101021842 276
88 3300009176 Ga0105242_10025413 Ga0105242_100254131 276
89 3300010375 Ga0105239_10176255 Ga0105239_101762553 276
90 3300025901 Ga0207688_10110574 Ga0207688_101105742 276
91 3300025937 Ga0207669_10308642 Ga0207669_103086421 276
92 3300026023 Ga0207677_10134067 Ga0207677_101340672 276
93 3300026075 Ga0207708_10325011 Ga0207708_103250111 276
94 3300026118 Ga0207675_100009426 Ga0207675_1000094262 276
95 3300026142 Ga0207698_10095966 Ga0207698_100959663 276
96 3300031548 Ga0307408_100059950 Ga0307408_1000599502 276
97 3300031548 Ga0307408_100093192 Ga0307408_1000931923 276
98 3300031548 Ga0307408_100206914 Ga0307408_1002069142 276
99 3300031731 Ga0307405_10024165 Ga0307405_100241654 276
100 3300031731 Ga0307405_10195572 Ga0307405_101955722 276
101 3300031824 Ga0307413_10141636 Ga0307413_101416362 276
102 3300031852 Ga0307410_10020514 Ga0307410_100205143 276
103 3300031852 Ga0307410_10021738 Ga0307410_100217382 276
104 3300031852 Ga0307410_10145653 Ga0307410_101456532 276
105 3300031901 Ga0307406_10000550 Ga0307406_100005507 276
106 3300031901 Ga0307406_10004909 Ga0307406_100049097 276
107 3300031901 Ga0307406_10007991 Ga0307406_100079912 276
108 3300031903 Ga0307407_10039095 Ga0307407_100390952 276
109 3300031911 Ga0307412_10079249 Ga0307412_100792492 276
110 3300031995 Ga0307409_100000001 Ga0307409_1000000016 276
111 3300031995 Ga0307409_100001875 Ga0307409_1000018753 276
112 3300031995 Ga0307409_100006966 Ga0307409_1000069666 276
113 3300031995 Ga0307409_100388881 Ga0307409_1003888811 276
114 3300032002 Ga0307416_100018034 Ga0307416_1000180344 276
115 3300032002 Ga0307416_100038535 Ga0307416_1000385353 276
116 3300032002 Ga0307416_100045527 Ga0307416_1000455274 276
117 3300032004 Ga0307414_10007605 Ga0307414_100076052 276
118 3300032004 Ga0307414_10021957 Ga0307414_100219572 276
119 3300032004 Ga0307414_10136355 Ga0307414_101363553 276
120 3300032005 Ga0307411_10001291 Ga0307411_100012917 276
121 3300032005 Ga0307411_10018328 Ga0307411_100183283 276
122 3300032126 Ga0307415_100000176 Ga0307415_10000017617 276
123 3300032126 Ga0307415_100125960 Ga0307415_1001259602 276
124 3300032126 Ga0307415_100202510 Ga0307415_1002025101 276
125 3300037312 Ga0395899_0014781 Ga0395899_0014781_310_1140 276
126 3300037466 Ga0395898_0054969 Ga0395898_0054969_1931_2761 276
127 3300038443 Ga0395901_0063304 Ga0395901_0063304_2664_3494 276
128 3300042016 Ga0439463_004031 Ga0439463_004031_1799_2632 276
129 3300042437 Ga0439444_0018648 Ga0439444_0018648_349_1182 276
130 3300042993 Ga0439440_0001198 Ga0439440_0001198_465_1298 276
131 3300046518 Ga0495631_0060150 Ga0495631_0060150_136_969 276
132 3300046665 Ga0495661_0188269 Ga0495661_0188269_21_854 276
133 3300046810 Ga0495660_0127558 Ga0495660_0127558_80_913 276
134 iso_pu_bacteria 2554235227 2555230668 276
135 iso_pu_bacteria 2654587600 2655031953 276
136 iso_pu_bacteria 2919395869 2919396379 276
137 3300004625 Ga0055543_1008264 Ga0055543_10082643 277
138 3300005262 Ga0065165_1000823 Ga0065165_10008237 277
139 3300006852 Ga0075433_10022306 Ga0075433_100223066 277
140 3300006871 Ga0075434_100061870 Ga0075434_1000618706 277
141 3300007076 Ga0075435_100022355 Ga0075435_1000223553 277
142 3300009147 Ga0114129_10580523 Ga0114129_105805232 277
143 3300032005 Ga0307411_10003858 Ga0307411_100038586 277
144 3300044712 Ga0453684_0432749 Ga0453684_0432749_172_1014 277
145 3300045051 Ga0451576_0293339 Ga0451576_0293339_174_1013 277
146 3300050511 nmdc:mga08y16_58688_c1 nmdc:mga08y16_58688_c1_535_1371 277
147 3300050512 nmdc:mga0n895_81154_c1 nmdc:mga0n895_81154_c1_997_1833 277
148 3300053136 Ga0500559_0014847 Ga0500559_0014847_1417_2262 277
149 iso_pu_bacteria 2946024296 2946026557 277
150 3300048911 Ga0496108_0329830 Ga0496108_0329830_39_884 278
151 3300048917 Ga0496114_0288085 Ga0496114_0288085_447_1292 278
152 3300006058 Ga0075432_10001643 Ga0075432_100016438 279
153 3300039062 Ga0400483_069070 Ga0400483_069070_2879_3760 279
154 3300039062 Ga0400483_229239 Ga0400483_229239_1184_2065 279
155 3300005544 Ga0070686_100000013 Ga0070686_100000013160 280
156 3300013105 Ga0157369_10010008 Ga0157369_1001000811 280
157 3300013250 Ga0171462_1005 Ga0171462_1005403 280
158 3300031901 Ga0307406_10036307 Ga0307406_100363073 280
159 3300031911 Ga0307412_10124880 Ga0307412_101248802 280
160 3300032126 Ga0307415_100488569 Ga0307415_1004885691 280
161 3300046522 Ga0495643_0000187 Ga0495643_0000187_50710_51561 280
162 3300046692 Ga0495671_0061700 Ga0495671_0061700_217_1068 280
163 3300048929 Ga0496126_0397816 Ga0496126_0397816_242_1102 280
164 3300049824 Ga0501045_0092178 Ga0501045_0092178_946_1800 280
165 3300050491 nmdc:mga00v17_220178_c1 nmdc:mga00v17_220178_c1_187_1029 280
166 3300050491 nmdc:mga00v17_70747_c1 nmdc:mga00v17_70747_c1_737_1579 280
167 3300053129 Ga0500628_001437 Ga0500628_001437_56_907 280
168 3300003322 rootL2_10101970 rootL2_101019702 281

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02567

PhzC-PhzF

Phenazine biosynthesis-like protein

4

280

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
1xub-assembly1.cif.gz_A-2 structure and function of the phenazine biosynthetic protein phzf from pseudomonas fluorescens 0.8464 3 277
1s7j-assembly2.cif.gz_B crystal structure of phenazine biosynthesis protein phzf family (enterococcus faecalis) 0.8416 1 280
1u1x-assembly1.cif.gz_B structure and function of phenazine-biosynthesis protein phzf from pseudomonas fluorescens 2-79 0.8389 1 280
1s7j-assembly2.cif.gz_B crystal structure of phenazine biosynthesis protein phzf family (enterococcus faecalis) 0.8357 1 280
1u1x-assembly1.cif.gz_B structure and function of phenazine-biosynthesis protein phzf from pseudomonas fluorescens 2-79 0.8333 1 280
ID Description Score Start End Superfamily
af_Q8NIL3_2_111_3.10.310.10 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1;Diaminopimelate Epimerase; Chain A, domain 1 0.9649 3 108 3.10.310.10
af_Q8NIL3_2_111_3.10.310.10 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1;Diaminopimelate Epimerase; Chain A, domain 1 0.9224 3 108 3.10.310.10
af_P38765_5_131_1.20.1730.10 Mainly Alpha;Up-down Bundle;Sodium/glucose cotransporter;Sodium/glucose cotransporter 0.9188 5 121 1.20.1730.10
1s7jA01 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1;Diaminopimelate Epimerase; Chain A, domain 1 0.9167 1 116 3.10.310.10
1u1vA01 Alpha Beta;Roll;Diaminopimelate Epimerase; Chain A, domain 1;Diaminopimelate Epimerase; Chain A, domain 1 0.9043 4 113 3.10.310.10
ID Description Score Start End GO Terms
AF-A0A4P5V4H8-F1-model_v4 PhzF family phenazine biosynthesis protein 0.9826 3 95 GO:0005737
GO:0009058
GO:0016853
AF-A0A4U9HFZ8-F1-model_v4 Trans-2,3-dihydro-3-hydroxyanthranilate isomerase (EC 5.3.3.17) 0.982 1 110 GO:0005737
GO:0009058
GO:0102943
AF-A0A848Y365-F1-model_v4 PhzF family phenazine biosynthesis protein 0.982 3 101 GO:0005737
GO:0009058
GO:0016853
AF-A0A5N1JAX9-F1-model_v4 PhzF family phenazine biosynthesis protein 0.9818 1 280 GO:0005737
GO:0009058
GO:0016853
AF-A0A535SIR4-F1-model_v4 PhzF family phenazine biosynthesis protein 0.981 1 81 GO:0005737
GO:0009058
GO:0016853

Feature Viewer

pLDDT pTM Quality
94.34 0.9 High
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Predicted Structure (AlphaFold2)

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