F252956

General Info

Members Datasets Scaffolds Average Seq Length
168 144 119 342

Family's Representative Sequence

Representative Sequence 3300031731|Ga0307405_10021189|Ga0307405_100211893
Length 367
Sequence MSFIYSSPGPSTGTVASAEAASHMPAEWEPHHRTWMAFPPPNGTFGQVGSSTLDRARAAWSNVARTISRREPVTVVADPRDATAAREWLGEGITVVEVPLDDAWIRDSGPTFVHCPDGSLAAVDWVFNGWGAQGWAAWEKDRDVAGAVAGHAGVPAVSSALVNEGGGFHVDGEGTVLLTETVQLDPGRNPGATKESVEAQIHAALGTTKAIWLPRGLTRDYGEFGTRGHVDIVAAFAGPGTVLLHRQDNPAHPDHEVYRELREALAGQTDARGRPLRIIDVPAPTVLKDDEGFVDWSYINHYVANNVVVLCSFDDPNDSIAAGILQRAYPGRAVELVDARDVFAFGGGIHCITQQQPAPARPQDGPV

Samples

Sample ID Description Type Environment
1 2554235005 Streptomyces violaceusniger SPC6 Isolate Rhizosphere
2 2582581313 Streptomyces mirabilis OV308 Isolate Rhizosphere
3 2643221549 Agromyces sp. Root1464 Isolate Unclassified
4 2643221587 Streptomyces sp. Root66D1 Isolate Unclassified
5 2643221597 Microbacterium sp. Root180 Isolate Unclassified
6 2643221601 Kitasatospora sp. Root187 Isolate Unclassified
7 2643221631 Kitasatospora sp. Root107 Isolate Unclassified
8 2643221653 Rhizobium sp. Root1240 Isolate Unclassified
9 2643221670 Streptomyces sp. Root431 Isolate Unclassified
10 2643221677 Streptomyces sp. Root1304 Isolate Unclassified
11 2643221719 Rhizobium sp. Root274 Isolate Unclassified
12 2690315906 Arthrobacter sp. OY3WO11 Isolate Unclassified
13 2775506735 Arthrobacter sp. S95 1704 Isolate Unclassified
14 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
15 2786546132 Streptomyces sp. W SAI-097 Isolate Unclassified
16 2808606357 Arthrobacter sp. SLBN-122 Isolate Unclassified
17 2808606360 Arthrobacter sp. SLBN-112 Isolate Unclassified
18 2808606366 Arthrobacter sp. SLBN-83 Isolate Unclassified
19 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
20 2808606371 Arthrobacter sp. SLBN-53 Isolate Unclassified
21 2808606448 Streptomyces sp. 193411 Isolate Unclassified
22 2808606700 Arthrobacter agilis UMCV2 Isolate Rhizosphere
23 2811994871 Arthrobacter sp. SLBN-179 Isolate Unclassified
24 2818991272 Rhizobium sp. SLBN-4 Isolate Unclassified
25 2818991472 Kitasatospora viridis DSM 44826 Isolate Rhizosphere
26 2862574272 Streptomyces sp. AcE210 Isolate Nodule
27 2867428634 Streptomyces sp. RP5T Isolate Unclassified
28 2867475112 Streptomyces sp. TM32 Isolate Unclassified
29 2877676314 Streptomyces griseorubiginosus 3E-1 Isolate Unclassified
30 2905926851 Arthrobacter sedimenti MIC A30 Isolate Rhizosphere
31 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
32 2945916053 Arthrobacter ulcerisalmonis W1I2 Isolate Rhizosphere
33 2946003308 Arthrobacter agilis W3I6 Isolate Rhizosphere
34 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
35 2946059875 Arthrobacter sp. SLBN-112 Isolate Rhizosphere
36 2954673503 Streptomyces sp. SAI-119 Isolate Rhizosphere
37 2954682443 Streptomyces sp. SAI-149 Isolate Rhizosphere
38 2954711539 Streptomyces sp. SAI-090 Isolate Rhizosphere
39 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
40 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
41 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
42 2954749733 Streptomyces sp. SAI-135 Isolate Rhizosphere
43 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
44 2974302888 Pseudarthrobacter sp. SORGH_AS 212 Isolate Unclassified
45 2989776772 Rhizobium glycinendophyticum CL12 Isolate Unclassified
46 2997451912 Streptomyces piniterrae jys28 Isolate Rhizosphere
47 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
48 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
49 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
50 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
51 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
52 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
53 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
54 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
55 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
56 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
57 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300030521 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 13_EM Metagenome Unclassified
60 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
61 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
62 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
63 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
64 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
65 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
66 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
67 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
68 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
69 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
70 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
71 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
72 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
73 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
74 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
75 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
76 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
77 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
78 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
79 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
80 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
81 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
82 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
83 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
84 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
85 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
86 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
87 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
88 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
89 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
90 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
91 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
92 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
93 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
94 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
95 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
96 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
97 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
98 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
99 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
100 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
101 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
102 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
103 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
104 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
105 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
106 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
107 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
108 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
109 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
110 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
111 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
112 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
113 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
114 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
115 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
116 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
117 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
118 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
119 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
120 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
121 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
122 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
123 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
124 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
125 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
126 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
127 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
128 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
129 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
130 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
131 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
132 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
133 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
134 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
135 3300053086 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 endosphere Metagenome Endosphere
136 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
137 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
138 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
139 3300053149 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 endosphere Metagenome Endosphere
140 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
141 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
142 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
143 8054160619 Streptomyces rhizoryzae RS10V-4 Isolate Rhizosphere
144 8055431914 Allorhizobium sonneratiae BGMRC 0089 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 70.24
Metatranscriptomes 0.6
Isolates 29.17

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.17
Nodule 0.6
Rhizoplane 2.98
Rhizosphere 68.45
Stem 0
Stem Tuber 0
Unclassified 23.81

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24735J21928_10053320 3300002067 Bacteria 1166
2 rootL2_10087641 3300003322 Bacteria 9327
3 Ga0070709_10042619 3300005434 Bacteria 2804
4 Ga0068859_100013595 3300005617 Bacteria 8161
5 Ga0097620_100013595 3300006931 Bacteria 8161
6 Ga0105247_10002250 3300009101 Bacteria 13274
7 Ga0157369_10151009 3300013105 Bacteria 2455
8 Ga0163161_10028602 3300017792 Bacteria 3959
9 Ga0224712_10003510 3300022467 Bacteria 4088
10 Ga0207426_1010179 3300025302 Bacteria 3668
11 Ga0207710_10003044 3300025900 Bacteria 7540
12 Ga0207664_10131830 3300025929 Bacteria 2104
13 Ga0307511_10000110 3300030521 Bacteria 74100
14 Ga0265327_10001438 3300031251 Bacteria 30041
15 Ga0307509_10020581 3300031507 Bacteria 7482
16 Ga0307408_100000480 3300031548 Bacteria 34947
17 Ga0307408_100446804 3300031548 Bacteria 1121
18 Ga0307508_10064799 3300031616 Bacteria 3221
19 Ga0307514_10129024 3300031649 Bacteria 1745
20 Ga0316579_10022179 3300031691 Bacteria 2837
21 Ga0316578_10128130 3300031728 Bacteria 1526
22 Ga0307516_10029430 3300031730 Bacteria 5554
23 Ga0307405_10021189 3300031731 Bacteria 3649
24 Ga0307413_10032721 3300031824 Bacteria 2951
25 Ga0307413_10110421 3300031824 Bacteria 1840
26 Ga0307406_10056056 3300031901 Bacteria 2522
27 Ga0307407_10009638 3300031903 Bacteria 4508
28 Ga0307412_10000254 3300031911 Bacteria 34625
29 Ga0307412_10018253 3300031911 Bacteria 4217
30 Ga0307416_100161796 3300032002 Bacteria 2070
31 Ga0307416_100370066 3300032002 Bacteria 1459
32 Ga0307415_100054206 3300032126 Bacteria 2736
33 Ga0307415_100332622 3300032126 Bacteria 1272
34 Ga0307507_10000020 3300033179 Bacteria 220880
35 Ga0307510_10017208 3300033180 Bacteria 8528
36 Ga0316574_0004171 3300035398 Bacteria 7532
37 Ga0316574_0177465 3300035398 Bacteria 1371
38 Ga0316582_0191471 3300036647 Bacteria 1393
39 Ga0316584_0005212 3300036712 Bacteria 8693
40 Ga0395899_0160719 3300037312 Bacteria 1587
41 Ga0395900_0465390 3300037418 Bacteria 1218
42 Ga0395898_0050535 3300037466 Bacteria 4068
43 Ga0395898_0480292 3300037466 Bacteria 1182
44 Ga0395901_0013303 3300038443 Bacteria 8358
45 Ga0395901_0137531 3300038443 Bacteria 2567
46 Ga0400483_077224 3300039062 Bacteria 5500
47 Ga0466969_0000484 3300044656 Bacteria 21847
48 Ga0466969_0034508 3300044656 Bacteria 2563
49 Ga0466966_0002796 3300044684 Bacteria 11475
50 Ga0466961_0001715 3300044693 Bacteria 13632
51 Ga0466961_0012070 3300044693 Bacteria 5521
52 Ga0466961_0069201 3300044693 Bacteria 2241
53 Ga0466963_0039236 3300044694 Bacteria 3100
54 Ga0466971_0001684 3300044719 Bacteria 9359
55 Ga0466970_0073621 3300044765 Bacteria 1838
56 Ga0466960_0033830 3300044901 Bacteria 2378
57 Ga0466959_0000203 3300045049 Bacteria 38577
58 Ga0466959_0259082 3300045049 Bacteria 1198
59 Ga0466958_0012402 3300045836 Bacteria 4828
60 Ga0466958_0033163 3300045836 Bacteria 3075
61 Ga0495629_0026746 3300046459 Bacteria 4097
62 Ga0495638_0177114 3300046460 Bacteria 1219
63 Ga0495641_0068174 3300046461 Bacteria 1600
64 Ga0495580_0020293 3300046472 Bacteria 4921
65 Ga0495582_0101085 3300046473 Bacteria 1614
66 Ga0495662_0069232 3300046476 Bacteria 1709
67 Ga0495585_0006326 3300046492 Bacteria 7357
68 Ga0495665_0006025 3300046531 Bacteria 6534
69 Ga0495634_0184910 3300046642 Bacteria 1303
70 Ga0495588_0001931 3300046674 Bacteria 8856
71 Ga0495623_0023584 3300046679 Bacteria 3970
72 Ga0495658_0048545 3300046683 Bacteria 2394
73 Ga0495600_0163927 3300046809 Bacteria 1436
74 Ga0495581_0038332 3300047315 Bacteria 2773
75 Ga0495604_0057326 3300047317 Bacteria 2995
76 Ga0495685_000296 3300047447 Bacteria 16417
77 Ga0495681_0000245 3300047470 Bacteria 45204
78 Ga0495593_0029125 3300047673 Bacteria 3030
79 Ga0496102_0000264 3300048905 Bacteria 67050
80 Ga0496103_0000108 3300048906 Bacteria 90848
81 Ga0496103_0015601 3300048906 Bacteria 4525
82 Ga0496112_0047280 3300048915 Bacteria 4221
83 Ga0496114_0254135 3300048917 Bacteria 1547
84 Ga0496118_0075807 3300048921 Bacteria 2396
85 Ga0496119_0054995 3300048922 Bacteria 2420
86 Ga0496126_0067326 3300048929 Bacteria 3200
87 Ga0501031_0082866 3300049568 Bacteria 2090
88 Ga0501032_0016671 3300049569 Bacteria 5163
89 Ga0501033_0003068 3300049570 Bacteria 13881
90 Ga0501033_0008734 3300049570 Bacteria 7834
91 Ga0501033_0193576 3300049570 Bacteria 1454
92 Ga0501036_0006377 3300049572 Bacteria 9574
93 Ga0501037_0030912 3300049573 Bacteria 3955
94 Ga0501037_0034042 3300049573 Bacteria 3761
95 Ga0501038_0020790 3300049574 Bacteria 5899
96 Ga0501038_0067740 3300049574 Bacteria 3036
97 Ga0501039_0059233 3300049575 Bacteria 2966
98 Ga0501042_0008765 3300049578 Bacteria 6705
99 Ga0501043_0013679 3300049579 Bacteria 6352
100 Ga0501043_0032174 3300049579 Bacteria 4122
101 Ga0501043_0064598 3300049579 Bacteria 2874
102 Ga0501046_0000546 3300049580 Bacteria 37423
103 Ga0501046_0006726 3300049580 Bacteria 10153
104 Ga0501047_0064468 3300049581 Bacteria 3533
105 Ga0501048_0023393 3300049582 Bacteria 4515
106 Ga0501070_0013441 3300049586 Bacteria 6900
107 Ga0501070_0222095 3300049586 Bacteria 1549
108 Ga0501074_0166178 3300049590 Bacteria 1575
109 Ga0501080_0062895 3300049742 Bacteria 3454
110 Ga0501044_0050902 3300049823 Bacteria 4272
111 Ga0501044_0208032 3300049823 Bacteria 1912
112 Ga0500578_0009255 3300053086 Bacteria 6397
113 Ga0500646_0034290 3300053090 Bacteria 1407
114 Ga0500628_005713 3300053129 Bacteria 2086
115 Ga0500658_0005832 3300053134 Bacteria 4587
116 Ga0500600_0012183 3300053149 Bacteria 5218
117 Ga0500634_0064267 3300053161 Bacteria 1939
118 Ga0466962_0000138 3300061719 Bacteria 29768
119 Ga0466962_0009238 3300061719 Bacteria 4723

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300037466 Ga0395898_0050535 Ga0395898_0050535_445_1338 291
2 3300037312 Ga0395899_0160719 Ga0395899_0160719_40_951 297
3 3300037418 Ga0395900_0465390 Ga0395900_0465390_272_1183 297
4 3300038443 Ga0395901_0013303 Ga0395901_0013303_1658_2569 297
5 3300032126 Ga0307415_100054206 Ga0307415_1000542063 308
6 3300032002 Ga0307416_100370066 Ga0307416_1003700662 309
7 3300035398 Ga0316574_0177465 Ga0316574_0177465_16_975 318
8 3300053090 Ga0500646_0034290 Ga0500646_0034290_14_979 320
9 3300009101 Ga0105247_10002250 Ga0105247_100022509 321
10 3300048905 Ga0496102_0000264 Ga0496102_0000264_49299_50273 321
11 3300048906 Ga0496103_0000108 Ga0496103_0000108_29878_30852 321
12 3300048921 Ga0496118_0075807 Ga0496118_0075807_881_1855 321
13 3300048922 Ga0496119_0054995 Ga0496119_0054995_1363_2337 321
14 3300035398 Ga0316574_0004171 Ga0316574_0004171_5724_6734 323
15 3300036647 Ga0316582_0191471 Ga0316582_0191471_196_1206 323
16 3300036712 Ga0316584_0005212 Ga0316584_0005212_44_1054 323
17 3300037466 Ga0395898_0480292 Ga0395898_0480292_183_1169 323
18 3300038443 Ga0395901_0137531 Ga0395901_0137531_33_1019 323
19 3300046459 Ga0495629_0026746 Ga0495629_0026746_1988_2983 323
20 3300046472 Ga0495580_0020293 Ga0495580_0020293_1460_2455 323
21 3300046473 Ga0495582_0101085 Ga0495582_0101085_464_1459 323
22 3300046531 Ga0495665_0006025 Ga0495665_0006025_2705_3700 323
23 3300046674 Ga0495588_0001931 Ga0495588_0001931_2818_3813 323
24 3300047315 Ga0495581_0038332 Ga0495581_0038332_312_1307 323
25 3300047673 Ga0495593_0029125 Ga0495593_0029125_1988_2983 323
26 3300049574 Ga0501038_0067740 Ga0501038_0067740_971_1963 324
27 3300031824 Ga0307413_10032721 Ga0307413_100327212 331
28 3300044693 Ga0466961_0012070 Ga0466961_0012070_3783_4802 331
29 3300045049 Ga0466959_0259082 Ga0466959_0259082_27_1025 331
30 3300033180 Ga0307510_10017208 Ga0307510_100172085 332
31 3300046461 Ga0495641_0068174 Ga0495641_0068174_17_1018 332
32 iso_pu_bacteria 2554235005 2554256100 332
33 iso_pu_bacteria 2643221670 2644387057 332
34 iso_pu_bacteria 2918501144 2918506671 332
35 iso_pu_bacteria 2946003308 2946006292 332
36 3300005617 Ga0068859_100013595 Ga0068859_1000135955 333
37 3300006931 Ga0097620_100013595 Ga0097620_1000135953 333
38 3300025900 Ga0207710_10003044 Ga0207710_100030444 333
39 iso_pu_bacteria 2643221587 2643944080 333
40 iso_pu_bacteria 2643221677 2644434817 333
41 iso_pu_bacteria 2784132148 2784590548 333
42 iso_pu_bacteria 2808606448 2809234241 333
43 iso_pu_bacteria 8023623736 8023631184 333
44 iso_pu_bacteria 2582581313 2585311321 334
45 iso_pu_bacteria 2786546132 2786672816 334
46 iso_pu_bacteria 2862574272 2862577330 334
47 iso_pu_bacteria 2867428634 2867430813 334
48 iso_pu_bacteria 2877676314 2877678883 334
49 iso_pu_bacteria 2946041624 2946045346 334
50 iso_pu_bacteria 2954673503 2954679120 334
51 iso_pu_bacteria 2954682443 2954685032 334
52 iso_pu_bacteria 2954711539 2954714144 334
53 iso_pu_bacteria 2954721474 2954724097 334
54 iso_pu_bacteria 2954731030 2954737742 334
55 iso_pu_bacteria 2954740390 2954742995 334
56 iso_pu_bacteria 2954749733 2954756578 334
57 iso_pu_bacteria 2954759201 2954761953 334
58 3300046809 Ga0495600_0163927 Ga0495600_0163927_326_1357 335
59 3300048917 Ga0496114_0254135 Ga0496114_0254135_501_1529 335
60 iso_pu_bacteria 2643221549 2643767512 335
61 iso_pu_bacteria 2643221597 2643996653 335
62 iso_pu_bacteria 2643221653 2644300953 335
63 iso_pu_bacteria 2643221719 2644659175 335
64 iso_pu_bacteria 2808606368 2808883831 335
65 iso_pu_bacteria 2818991272 2819240910 335
66 iso_pu_bacteria 2989776772 2989781458 335
67 iso_pu_bacteria 8055431914 8055432683 335
68 3300013105 Ga0157369_10151009 Ga0157369_101510092 336
69 3300030521 Ga0307511_10000110 Ga0307511_1000011039 336
70 3300031507 Ga0307509_10020581 Ga0307509_100205815 336
71 3300031824 Ga0307413_10110421 Ga0307413_101104212 336
72 3300032126 Ga0307415_100332622 Ga0307415_1003326221 336
73 3300046460 Ga0495638_0177114 Ga0495638_0177114_117_1139 337
74 3300049580 Ga0501046_0000546 Ga0501046_0000546_35662_36711 337
75 3300046492 Ga0495585_0006326 Ga0495585_0006326_3868_4896 338
76 3300049568 Ga0501031_0082866 Ga0501031_0082866_300_1328 338
77 3300049570 Ga0501033_0003068 Ga0501033_0003068_10316_11344 338
78 3300049570 Ga0501033_0193576 Ga0501033_0193576_73_1101 338
79 3300049572 Ga0501036_0006377 Ga0501036_0006377_6790_7818 338
80 3300049573 Ga0501037_0030912 Ga0501037_0030912_2022_3050 338
81 3300049574 Ga0501038_0020790 Ga0501038_0020790_2449_3477 338
82 3300049575 Ga0501039_0059233 Ga0501039_0059233_133_1161 338
83 3300049578 Ga0501042_0008765 Ga0501042_0008765_1927_2955 338
84 3300049579 Ga0501043_0013679 Ga0501043_0013679_5096_6124 338
85 3300049579 Ga0501043_0064598 Ga0501043_0064598_1576_2652 338
86 3300049580 Ga0501046_0006726 Ga0501046_0006726_2952_3980 338
87 3300049582 Ga0501048_0023393 Ga0501048_0023393_215_1243 338
88 3300049586 Ga0501070_0222095 Ga0501070_0222095_316_1344 338
89 3300049590 Ga0501074_0166178 Ga0501074_0166178_399_1427 338
90 3300049742 Ga0501080_0062895 Ga0501080_0062895_607_1635 338
91 3300049823 Ga0501044_0050902 Ga0501044_0050902_2022_3050 338
92 3300031649 Ga0307514_10129024 Ga0307514_101290242 339
93 3300044693 Ga0466961_0069201 Ga0466961_0069201_608_1630 339
94 3300044694 Ga0466963_0039236 Ga0466963_0039236_64_1086 339
95 3300044765 Ga0466970_0073621 Ga0466970_0073621_104_1126 339
96 3300045836 Ga0466958_0033163 Ga0466958_0033163_39_1061 339
97 3300061719 Ga0466962_0009238 Ga0466962_0009238_778_1800 339
98 iso_pu_bacteria 2818991472 2819743445 339
99 3300031251 Ga0265327_10001438 Ga0265327_1000143821 340
100 3300031548 Ga0307408_100000480 Ga0307408_1000004806 340
101 3300031548 Ga0307408_100446804 Ga0307408_1004468041 340
102 3300031911 Ga0307412_10000254 Ga0307412_100002549 340
103 3300044656 Ga0466969_0000484 Ga0466969_0000484_3009_4037 340
104 3300044684 Ga0466966_0002796 Ga0466966_0002796_6767_7795 340
105 3300044693 Ga0466961_0001715 Ga0466961_0001715_5386_6414 340
106 3300044719 Ga0466971_0001684 Ga0466971_0001684_1744_2772 340
107 3300045049 Ga0466959_0000203 Ga0466959_0000203_28450_29478 340
108 3300045836 Ga0466958_0012402 Ga0466958_0012402_693_1721 340
109 3300061719 Ga0466962_0000138 Ga0466962_0000138_18962_19990 340
110 iso_pu_bacteria 2643221601 2644014067 340
111 iso_pu_bacteria 2643221631 2644175540 340
112 3300005434 Ga0070709_10042619 Ga0070709_100426192 341
113 3300022467 Ga0224712_10003510 Ga0224712_100035102 341
114 3300025929 Ga0207664_10131830 Ga0207664_101318302 341
115 3300031616 Ga0307508_10064799 Ga0307508_100647992 341
116 3300033179 Ga0307507_10000020 Ga0307507_10000020134 341
117 3300039062 Ga0400483_077224 Ga0400483_077224_4235_5284 341
118 3300044656 Ga0466969_0034508 Ga0466969_0034508_1236_2285 341
119 iso_pu_bacteria 2867475112 2867475940 341
120 iso_pu_bacteria 2997451912 2997453020 341
121 iso_pu_bacteria 8054160619 8054165805 341
122 3300017792 Ga0163161_10028602 Ga0163161_100286023 342
123 3300031691 Ga0316579_10022179 Ga0316579_100221794 343
124 3300031728 Ga0316578_10128130 Ga0316578_101281302 343
125 3300031730 Ga0307516_10029430 Ga0307516_100294302 343
126 3300046642 Ga0495634_0184910 Ga0495634_0184910_255_1289 343
127 3300046683 Ga0495658_0048545 Ga0495658_0048545_63_1097 343
128 3300047447 Ga0495685_000296 Ga0495685_000296_6678_7712 343
129 3300047470 Ga0495681_0000245 Ga0495681_0000245_290_1324 343
130 3300049569 Ga0501032_0016671 Ga0501032_0016671_2441_3544 343
131 3300049570 Ga0501033_0008734 Ga0501033_0008734_451_1494 343
132 3300049573 Ga0501037_0034042 Ga0501037_0034042_769_1872 343
133 3300049579 Ga0501043_0032174 Ga0501043_0032174_2974_4077 343
134 3300049581 Ga0501047_0064468 Ga0501047_0064468_1845_2888 343
135 3300049586 Ga0501070_0013441 Ga0501070_0013441_5665_6768 343
136 3300049823 Ga0501044_0208032 Ga0501044_0208032_222_1265 343
137 3300053086 Ga0500578_0009255 Ga0500578_0009255_5034_6068 343
138 3300053129 Ga0500628_005713 Ga0500628_005713_219_1253 343
139 3300053134 Ga0500658_0005832 Ga0500658_0005832_1541_2575 343
140 3300053149 Ga0500600_0012183 Ga0500600_0012183_2016_3050 343
141 3300053161 Ga0500634_0064267 Ga0500634_0064267_228_1262 343
142 3300025302 Ga0207426_1010179 Ga0207426_10101793 345
143 3300046476 Ga0495662_0069232 Ga0495662_0069232_49_1092 345
144 3300046679 Ga0495623_0023584 Ga0495623_0023584_154_1197 345
145 3300047317 Ga0495604_0057326 Ga0495604_0057326_801_1844 345
146 3300048929 Ga0496126_0067326 Ga0496126_0067326_454_1512 345
147 3300003322 rootL2_10087641 rootL2_100876415 347
148 3300044901 Ga0466960_0033830 Ga0466960_0033830_252_1325 347
149 3300031731 Ga0307405_10021189 Ga0307405_100211893 348
150 3300031901 Ga0307406_10056056 Ga0307406_100560562 348
151 3300031903 Ga0307407_10009638 Ga0307407_100096383 348
152 3300031911 Ga0307412_10018253 Ga0307412_100182533 348
153 3300032002 Ga0307416_100161796 Ga0307416_1001617962 348
154 3300048906 Ga0496103_0015601 Ga0496103_0015601_2691_3743 348
155 3300048915 Ga0496112_0047280 Ga0496112_0047280_1932_3032 348
156 iso_pu_bacteria 2690315906 2691512062 348
157 iso_pu_bacteria 2775506735 2775657031 348
158 iso_pu_bacteria 2808606357 2808829228 348
159 iso_pu_bacteria 2808606360 2808850452 348
160 iso_pu_bacteria 2808606366 2808876967 348
161 iso_pu_bacteria 2808606371 2808898463 348
162 iso_pu_bacteria 2808606700 2810362670 348
163 iso_pu_bacteria 2811994871 2812319029 348
164 iso_pu_bacteria 2905926851 2905928898 348
165 iso_pu_bacteria 2945916053 2945916774 348
166 iso_pu_bacteria 2946059875 2946060612 348
167 iso_pu_bacteria 2974302888 2974304782 348
168 3300002067 JGI24735J21928_10053320 JGI24735J21928_100533201 349

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF04371

PAD_porph

Porphyromonas-type peptidyl-arginine deiminase

23

357

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
6nic-assembly2.cif.gz_D crystal structure of medicago truncatula agmatine iminohydrolase (deiminase) in complex with 6-aminohexanamide 0.931 11 347
6nic-assembly2.cif.gz_C crystal structure of medicago truncatula agmatine iminohydrolase (deiminase) in complex with 6-aminohexanamide 0.9302 11 347
3h7k-assembly1.cif.gz_A crystal structure of arabidopsis thaliana agmatine deiminase complexed with a covalently bound reaction intermediate 0.9287 10 347
6nic-assembly1.cif.gz_B crystal structure of medicago truncatula agmatine iminohydrolase (deiminase) in complex with 6-aminohexanamide 0.9265 11 347
6nib-assembly1.cif.gz_A-2 crystal structure of medicago truncatula agmatine iminohydrolase (deiminase) 0.9257 11 347
ID Description Score Start End Superfamily
3h7kA00 Alpha Beta;5-stranded Propeller;L-arginine/glycine Amidinotransferase; Chain A;L-arginine/glycine Amidinotransferase; Chain A 0.9163 10 347 3.75.10.10
3hvmA00 Alpha Beta;5-stranded Propeller;L-arginine/glycine Amidinotransferase; Chain A;L-arginine/glycine Amidinotransferase; Chain A 0.9123 10 345 3.75.10.10
3hvmA00 Alpha Beta;5-stranded Propeller;L-arginine/glycine Amidinotransferase; Chain A;L-arginine/glycine Amidinotransferase; Chain A 0.907 10 345 3.75.10.10
2ewoA00 Alpha Beta;5-stranded Propeller;L-arginine/glycine Amidinotransferase; Chain A;L-arginine/glycine Amidinotransferase; Chain A 0.901 11 348 3.75.10.10
1xknA00 Alpha Beta;5-stranded Propeller;L-arginine/glycine Amidinotransferase; Chain A;L-arginine/glycine Amidinotransferase; Chain A 0.8928 10 347 3.75.10.10
ID Description Score Start End GO Terms
AF-A0A6B3FNU6-F1-model_v4 Agmatine deiminase family protein 0.9762 136 347 GO:0004668
GO:0009446
GO:0047632
AF-A0A553ZER5-F1-model_v4 Agmatine deiminase family protein 0.9747 11 236 GO:0004668
GO:0009446
GO:0047632
AF-A0A2R5H404-F1-model_v4 deleted 0.9735 221 347
AF-A0A2V2Q8Q4-F1-model_v4 Agmatine deiminase 0.9727 43 347 GO:0004668
GO:0009446
GO:0047632
AF-A0A7Y5KJF9-F1-model_v4 Agmatine deiminase family protein 0.9714 13 347 GO:0004668
GO:0009446
GO:0047632

Feature Viewer

pLDDT pTM Quality
90.73 0.9 High
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Predicted Structure (AlphaFold2)

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