F252570

General Info

Members Datasets Scaffolds Average Seq Length
168 88 168 597

Family's Representative Sequence

Representative Sequence 3300009147|Ga0114129_10056264|Ga0114129_100562643
Length 655
Sequence MLVFYLFVVRLWTVVRSSSPVLFRLWRTRRSLFILFDQVVYGEKMTTIEPAITFDFRKAVDENRLKGIWKMMVDYRFPYLGATAALAVSALAKTFTYLLLRYFADDVLTQGKYIGNSLTETFIWIAVGFVGLAAVEGGFSFISGRLAAYTAEGITRRLRDFLFDHIQRLSFSYHATTPTGDLIERVTSDVDALRRFFSEQGIGMGRIILLFVINFVAILNLNVKLGLMSVIVIPFMLLVSVWFFKKVTKRYEDYQAQEAVLSTTLQENLTGVRVVKAFARQEYEKGKFEKDNWGKFLKGKLLLFMHSMFWPLSDIVLGLQMLFGFIYAATMAINGEITIGMYIAYVGLVVWLIWPIRNLGRIIVSASTGMVSYGRLMEIARQVREPLFDGKFQPEGPVRGEVVFENVSFMYSDGEKDVLKNXXFTAKPGQAIALLGSTGSGKSSLVNLLPRFHEYTGGRILLDGVELTDYSRAYLRRQIGIVEQEPFLFSRSIRENITYGVGRDVSQDEVERAARAAAIHDVIMGFPDGYNTLVGEKGVTLSGGQKQRVTIARTLLKNPRILILDDSTSSVDPETEAAIRDALNELMENRTTFIIAHRIQSVMIADLILVLDKGEVIQMGTHEELVSQMDGMYRRIYDIQTRIDEELEMEILRVN

Samples

Sample ID Description Type Environment
1 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
3 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
4 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
5 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
6 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
7 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
8 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
9 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
10 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
11 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
12 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
13 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
14 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
15 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
16 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
17 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
18 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
19 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
20 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
21 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
22 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
23 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
24 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
25 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
26 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
27 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
29 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
30 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
31 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
32 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
33 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
40 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
41 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
42 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
43 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
44 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
45 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
46 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
47 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
48 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
49 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
50 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
51 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
52 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
53 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
54 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
55 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
56 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
57 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
58 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
59 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
60 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
61 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
62 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
63 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
64 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
65 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
66 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
67 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
68 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
69 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
70 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
71 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
72 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
73 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
74 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
75 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
76 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
77 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
78 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
79 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
80 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
81 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
82 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
83 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
84 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
85 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
86 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
87 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
88 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.4
Metatranscriptomes 0.6
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 98.21
Stem 0
Stem Tuber 0
Unclassified 1.79

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10001227 3300003203 Bacteria 12069
2 Ga0065704_10000677 3300005289 Bacteria 13873
3 Ga0065707_10000513 3300005295 Bacteria 47899
4 Ga0065707_10005006 3300005295 Bacteria 4229
5 Ga0065707_10098304 3300005295 Unclassified 3085
6 Ga0070690_100007798 3300005330 Bacteria 6137
7 Ga0070670_100000502 3300005331 Bacteria 31381
8 Ga0070666_10031666 3300005335 Bacteria 3492
9 Ga0068868_100019867 3300005338 Bacteria 5039
10 Ga0070661_100007575 3300005344 Bacteria 7491
11 Ga0070675_100006269 3300005354 Bacteria 9129
12 Ga0070671_100051142 3300005355 Bacteria 3436
13 Ga0070667_100003704 3300005367 Bacteria 13005
14 Ga0070698_100043347 3300005471 Bacteria 4613
15 Ga0070698_100057864 3300005471 Unclassified 3921
16 Ga0070698_100077737 3300005471 Bacteria 3317
17 Ga0070699_100073971 3300005518 Bacteria 2964
18 Ga0070672_100075492 3300005543 Bacteria 2691
19 Ga0070664_100000418 3300005564 Bacteria 31760
20 Ga0068859_100060412 3300005617 Bacteria 3819
21 Ga0068864_100155131 3300005618 Bacteria 2077
22 Ga0068863_100059284 3300005841 Bacteria 3622
23 Ga0068862_100140719 3300005844 Bacteria 2141
24 Ga0081539_10012340 3300005985 Bacteria 6603
25 Ga0081539_10023723 3300005985 Bacteria 4007
26 Ga0097621_100011161 3300006237 Bacteria 6612
27 Ga0097621_100078636 3300006237 Bacteria 2740
28 Ga0068871_100129543 3300006358 Bacteria 2138
29 Ga0075428_100034935 3300006844 Bacteria 5541
30 Ga0075431_100012142 3300006847 Bacteria 8689
31 Ga0075434_100068901 3300006871 Bacteria 3526
32 Ga0075429_100016477 3300006880 Bacteria 6404
33 Ga0075429_100103932 3300006880 Bacteria 2481
34 Ga0097620_100060412 3300006931 Bacteria 3819
35 Ga0114129_10006550 3300009147 Bacteria 16526
36 Ga0114129_10056264 3300009147 Bacteria 5510
37 Ga0114129_10169483 3300009147 Unclassified 2977
38 Ga0105248_10003060 3300009177 Bacteria 18547
39 Ga0163162_10000630 3300013306 Bacteria 32671
40 Ga0157375_10004144 3300013308 Bacteria 12580
41 Ga0163163_10207234 3300014325 Bacteria 2009
42 Ga0207680_10021900 3300025903 Bacteria 3467
43 Ga0207671_10042985 3300025914 Bacteria 3343
44 Ga0207670_10128163 3300025936 Bacteria 1855
45 Ga0207679_10027335 3300025945 Bacteria 3944
46 Ga0207641_10091477 3300026088 Bacteria 2662
47 Ga0207676_10089108 3300026095 Bacteria 2527
48 Ga0265323_10006348 3300028653 Bacteria 4970
49 Ga0265322_10011321 3300028654 Bacteria 2588
50 Ga0265338_10039269 3300028800 Bacteria 4469
51 Ga0265330_10004746 3300031235 Bacteria 6865
52 Ga0265316_10001560 3300031344 Bacteria 24560
53 Ga0316575_10001257 3300031665 Bacteria 8068
54 Ga0316575_10001631 3300031665 Bacteria 7324
55 Ga0316579_10004473 3300031691 Bacteria 5551
56 Ga0316579_10006368 3300031691 Bacteria 4818
57 Ga0316579_10013434 3300031691 Bacteria 3523
58 Ga0316579_10034561 3300031691 Bacteria 2326
59 Ga0316579_10037934 3300031691 Bacteria 2227
60 Ga0265342_10000799 3300031712 Bacteria 31691
61 Ga0316576_10000057 3300031727 Bacteria 36154
62 Ga0316576_10003768 3300031727 Bacteria 8955
63 Ga0316576_10052681 3300031727 Bacteria 2963
64 Ga0316578_10001075 3300031728 Bacteria 10579
65 Ga0316578_10001754 3300031728 Bacteria 9087
66 Ga0316577_10000788 3300031733 Bacteria 13688
67 Ga0316577_10003056 3300031733 Bacteria 8395
68 Ga0316577_10005034 3300031733 Bacteria 6889
69 Ga0316577_10005856 3300031733 Bacteria 6470
70 Ga0316577_10013087 3300031733 Bacteria 4528
71 Ga0316577_10037002 3300031733 Bacteria 2730
72 Ga0316577_10042732 3300031733 Bacteria 2536
73 Ga0316577_10055900 3300031733 Bacteria 2202
74 Ga0307410_10042260 3300031852 Bacteria 3012
75 Ga0307416_100088848 3300032002 Bacteria 2644
76 Ga0307415_100065734 3300032126 Unclassified 2528
77 Ga0316583_10001304 3300032133 Bacteria 8247
78 Ga0316583_10005021 3300032133 Bacteria 4735
79 Ga0316585_10011830 3300032137 Bacteria 2577
80 Ga0316580_10005413 3300032139 Bacteria 3723
81 Ga0316596_1004123 3300033541 Bacteria 3231
82 Ga0316574_0007644 3300035398 Bacteria 5937
83 Ga0316574_0012959 3300035398 Bacteria 4783
84 Ga0316574_0054692 3300035398 Bacteria 2493
85 Ga0373937_0008014 3300036401 Bacteria 9158
86 Ga0316582_0000744 3300036647 Bacteria 13025
87 Ga0316582_0002521 3300036647 Bacteria 8642
88 Ga0316582_0008611 3300036647 Bacteria 5489
89 Ga0316582_0009193 3300036647 Bacteria 5351
90 Ga0316582_0031212 3300036647 Bacteria 3255
91 Ga0316582_0064519 3300036647 Bacteria 2356
92 Ga0316584_0000062 3300036712 Bacteria 41749
93 Ga0316584_0018634 3300036712 Bacteria 5010
94 Ga0316584_0023234 3300036712 Bacteria 4530
95 Ga0316584_0040258 3300036712 Bacteria 3482
96 Ga0316584_0048094 3300036712 Bacteria 3187
97 Ga0316584_0061318 3300036712 Bacteria 2816
98 Ga0316584_0062358 3300036712 Bacteria 2793
99 Ga0316584_0068107 3300036712 Unclassified 2668
100 Ga0316581_0000002 3300037588 Bacteria 25010
101 Ga0316581_0001793 3300037588 Bacteria 4970
102 Ga0316581_0003244 3300037588 Bacteria 4025
103 Ga0400483_115186 3300039062 Bacteria 2930
104 Ga0400489_17027 3300039093 Bacteria 6286
105 Ga0400489_77442 3300039093 Bacteria 7021
106 Ga0451577_0017031 3300042876 Bacteria 6721
107 Ga0451577_0020697 3300042876 Bacteria 6032
108 Ga0451577_0084456 3300042876 Bacteria 2833
109 Ga0453683_0000679 3300044673 Bacteria 36072
110 Ga0453683_0005534 3300044673 Bacteria 8805
111 Ga0453683_0010258 3300044673 Bacteria 6213
112 Ga0453684_0000007 3300044712 Bacteria 1301482
113 Ga0453684_0000021 3300044712 Bacteria 873490
114 Ga0453684_0000044 3300044712 Bacteria 585643
115 Ga0453684_0000169 3300044712 Bacteria 289762
116 Ga0453684_0000267 3300044712 Bacteria 225314
117 Ga0453684_0001429 3300044712 Bacteria 68492
118 Ga0453684_0001558 3300044712 Bacteria 63769
119 Ga0453684_0002733 3300044712 Bacteria 41763
120 Ga0453684_0005712 3300044712 Bacteria 24362
121 Ga0453684_0005891 3300044712 Bacteria 23781
122 Ga0453684_0012262 3300044712 Bacteria 14193
123 Ga0453684_0015776 3300044712 Bacteria 11888
124 Ga0453684_0021500 3300044712 Bacteria 9635
125 Ga0453684_0029331 3300044712 Bacteria 7816
126 Ga0453684_0039422 3300044712 Bacteria 6438
127 Ga0453684_0046221 3300044712 Bacteria 5793
128 Ga0453684_0050534 3300044712 Bacteria 5467
129 Ga0453684_0052805 3300044712 Bacteria 5311
130 Ga0453684_0062474 3300044712 Bacteria 4771
131 Ga0453684_0062794 3300044712 Bacteria 4756
132 Ga0453684_0071214 3300044712 Bacteria 4397
133 Ga0453684_0088142 3300044712 Unclassified 3843
134 Ga0453684_0108060 3300044712 Unclassified 3386
135 Ga0453684_0109569 3300044712 Unclassified 3358
136 Ga0453684_0135129 3300044712 Bacteria 2954
137 Ga0453684_0145200 3300044712 Bacteria 2827
138 Ga0453684_0157407 3300044712 Bacteria 2692
139 Ga0451576_0001318 3300045051 Bacteria 42969
140 Ga0451576_0025404 3300045051 Bacteria 6380
141 Ga0451576_0166115 3300045051 Bacteria 2303
142 Ga0495592_0073850 3300046454 Bacteria 2478
143 Ga0495629_0063554 3300046459 Archaea 2578
144 Ga0495667_0000225 3300046559 Bacteria 37161
145 Ga0495657_0000710 3300046675 Bacteria 29921
146 Ga0495658_0022225 3300046683 Bacteria 3352
147 Ga0495658_0036010 3300046683 Archaea 2728
148 Ga0495600_0073732 3300046809 Bacteria 2229
149 Ga0495674_0048212 3300047319 Bacteria 3771
150 Ga0495684_0165700 3300047471 Bacteria 1646
151 Ga0501039_0061568 3300049575 Bacteria 2907
152 Ga0501042_0006171 3300049578 Bacteria 7773
153 Ga0501071_0089240 3300049587 Bacteria 2262
154 Ga0501072_0006194 3300049588 Bacteria 9111
155 Ga0501073_0114026 3300049589 Bacteria 1874
156 Ga0501077_0029474 3300049593 Bacteria 3489
157 Ga0501080_0013663 3300049742 Bacteria 7476
158 nmdc:mga05p37_1149_c1 3300050507 Bacteria 30461
159 nmdc:mga05p37_12767_c1 3300050507 Bacteria 10040
160 nmdc:mga05p37_168545_c1 3300050507 Unclassified 2672
161 nmdc:mga05p37_76469_c1 3300050507 Unclassified 4122
162 nmdc:mga09592_97975_c1 3300050508 Unclassified 2510
163 nmdc:mga06r32_39985_c1 3300050510 Bacteria 3215
164 nmdc:mga06r32_47637_c1 3300050510 Unclassified 4095
165 nmdc:mga06r32_79822_c1 3300050510 Bacteria 3183
166 nmdc:mga0a205_38109_c1 3300050515 Bacteria 4624
167 Ga0501084_0009751 3300054114 Bacteria 7943
168 Ga0501082_0006401 3300060353 Bacteria 10216

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049575 Ga0501039_0061568 Ga0501039_0061568_1352_2857 465
2 3300047471 Ga0495684_0165700 Ga0495684_0165700_17_1459 475
3 3300046683 Ga0495658_0022225 Ga0495658_0022225_48_1604 515
4 3300049589 Ga0501073_0114026 Ga0501073_0114026_284_1849 520
5 3300006847 Ga0075431_100012142 Ga0075431_1000121422 538
6 3300050510 nmdc:mga06r32_39985_c1 nmdc:mga06r32_39985_c1_166_1935 538
7 3300039093 Ga0400489_17027 Ga0400489_17027_4318_6039 540
8 3300046683 Ga0495658_0036010 Ga0495658_0036010_487_2220 561
9 3300031691 Ga0316579_10034561 Ga0316579_100345611 562
10 3300031733 Ga0316577_10037002 Ga0316577_100370022 562
11 3300036712 Ga0316584_0023234 Ga0316584_0023234_1583_3349 562
12 3300005330 Ga0070690_100007798 Ga0070690_1000077982 564
13 3300005331 Ga0070670_100000502 Ga0070670_1000005024 564
14 3300005335 Ga0070666_10031666 Ga0070666_100316662 564
15 3300005338 Ga0068868_100019867 Ga0068868_1000198672 564
16 3300005344 Ga0070661_100007575 Ga0070661_1000075754 564
17 3300005354 Ga0070675_100006269 Ga0070675_1000062694 564
18 3300005367 Ga0070667_100003704 Ga0070667_10000370410 564
19 3300005543 Ga0070672_100075492 Ga0070672_1000754922 564
20 3300005564 Ga0070664_100000418 Ga0070664_10000041827 564
21 3300005617 Ga0068859_100060412 Ga0068859_1000604122 564
22 3300005618 Ga0068864_100155131 Ga0068864_1001551312 564
23 3300005841 Ga0068863_100059284 Ga0068863_1000592842 564
24 3300006931 Ga0097620_100060412 Ga0097620_1000604122 564
25 3300009177 Ga0105248_10003060 Ga0105248_100030609 564
26 3300013306 Ga0163162_10000630 Ga0163162_1000063024 564
27 3300013308 Ga0157375_10004144 Ga0157375_1000414411 564
28 3300025903 Ga0207680_10021900 Ga0207680_100219002 564
29 3300025936 Ga0207670_10128163 Ga0207670_101281631 564
30 3300025945 Ga0207679_10027335 Ga0207679_100273351 564
31 3300026088 Ga0207641_10091477 Ga0207641_100914771 564
32 3300026095 Ga0207676_10089108 Ga0207676_100891082 564
33 3300036712 Ga0316584_0068107 Ga0316584_0068107_874_2634 564
34 3300039093 Ga0400489_77442 Ga0400489_77442_3842_5653 568
35 3300006237 Ga0097621_100011161 Ga0097621_1000111616 574
36 3300006237 Ga0097621_100078636 Ga0097621_1000786362 574
37 3300006358 Ga0068871_100129543 Ga0068871_1001295431 574
38 3300014325 Ga0163163_10207234 Ga0163163_102072341 574
39 3300036401 Ga0373937_0008014 Ga0373937_0008014_3792_5531 574
40 3300046459 Ga0495629_0063554 Ga0495629_0063554_645_2378 574
41 3300046559 Ga0495667_0000225 Ga0495667_0000225_2604_4343 574
42 3300046675 Ga0495657_0000710 Ga0495657_0000710_20763_22502 574
43 3300046809 Ga0495600_0073732 Ga0495600_0073732_310_2049 574
44 3300025914 Ga0207671_10042985 Ga0207671_100429852 577
45 3300031691 Ga0316579_10013434 Ga0316579_100134341 577
46 3300054114 Ga0501084_0009751 Ga0501084_0009751_4607_6394 577
47 3300044712 Ga0453684_0001429 Ga0453684_0001429_6590_8326 578
48 3300046454 Ga0495592_0073850 Ga0495592_0073850_365_2110 578
49 3300047319 Ga0495674_0048212 Ga0495674_0048212_1716_3461 578
50 3300044712 Ga0453684_0062794 Ga0453684_0062794_31_1845 579
51 3300045051 Ga0451576_0025404 Ga0451576_0025404_2453_4246 579
52 3300049578 Ga0501042_0006171 Ga0501042_0006171_479_2329 579
53 3300049587 Ga0501071_0089240 Ga0501071_0089240_319_2169 579
54 3300049588 Ga0501072_0006194 Ga0501072_0006194_6356_8206 579
55 3300049593 Ga0501077_0029474 Ga0501077_0029474_1010_2860 579
56 3300049742 Ga0501080_0013663 Ga0501080_0013663_1191_3041 579
57 3300060353 Ga0501082_0006401 Ga0501082_0006401_107_1957 579
58 3300036712 Ga0316584_0048094 Ga0316584_0048094_984_2801 584
59 3300044673 Ga0453683_0010258 Ga0453683_0010258_3727_5484 585
60 3300044712 Ga0453684_0046221 Ga0453684_0046221_3852_5645 585
61 3300050510 nmdc:mga06r32_79822_c1 nmdc:mga06r32_79822_c1_20_1777 585
62 3300039062 Ga0400483_115186 Ga0400483_115186_771_2603 587
63 3300005355 Ga0070671_100051142 Ga0070671_1000511422 588
64 3300044712 Ga0453684_0052805 Ga0453684_0052805_2113_3927 589
65 3300031733 Ga0316577_10055900 Ga0316577_100559001 590
66 3300032133 Ga0316583_10005021 Ga0316583_100050213 590
67 3300005985 Ga0081539_10023723 Ga0081539_100237232 593
68 3300031665 Ga0316575_10001631 Ga0316575_100016312 595
69 3300031691 Ga0316579_10004473 Ga0316579_100044733 595
70 3300031727 Ga0316576_10000057 Ga0316576_1000005725 595
71 3300031727 Ga0316576_10052681 Ga0316576_100526812 595
72 3300031728 Ga0316578_10001075 Ga0316578_100010759 595
73 3300031728 Ga0316578_10001754 Ga0316578_100017545 595
74 3300031733 Ga0316577_10005034 Ga0316577_100050343 595
75 3300032133 Ga0316583_10001304 Ga0316583_100013045 595
76 3300032139 Ga0316580_10005413 Ga0316580_100054132 595
77 3300033541 Ga0316596_1004123 Ga0316596_10041232 595
78 3300035398 Ga0316574_0054692 Ga0316574_0054692_387_2249 595
79 3300036647 Ga0316582_0009193 Ga0316582_0009193_1830_3683 595
80 3300036712 Ga0316584_0000062 Ga0316584_0000062_34641_36494 595
81 3300036712 Ga0316584_0061318 Ga0316584_0061318_97_1959 595
82 3300037588 Ga0316581_0000002 Ga0316581_0000002_20345_22198 595
83 3300031235 Ga0265330_10004746 Ga0265330_100047462 596
84 3300031344 Ga0265316_10001560 Ga0265316_1000156020 596
85 3300031691 Ga0316579_10037934 Ga0316579_100379342 596
86 3300031712 Ga0265342_10000799 Ga0265342_1000079914 596
87 3300036647 Ga0316582_0064519 Ga0316582_0064519_133_2022 596
88 3300042876 Ga0451577_0017031 Ga0451577_0017031_1445_3280 598
89 3300044712 Ga0453684_0000007 Ga0453684_0000007_642754_644589 598
90 3300005518 Ga0070699_100073971 Ga0070699_1000739712 599
91 3300044712 Ga0453684_0000267 Ga0453684_0000267_104274_106121 599
92 3300044712 Ga0453684_0135129 Ga0453684_0135129_215_2062 599
93 3300044712 Ga0453684_0145200 Ga0453684_0145200_192_2039 599
94 3300035398 Ga0316574_0007644 Ga0316574_0007644_4051_5859 600
95 3300044712 Ga0453684_0000169 Ga0453684_0000169_111849_113714 600
96 3300044712 Ga0453684_0088142 Ga0453684_0088142_92_1939 601
97 3300031733 Ga0316577_10013087 Ga0316577_100130872 602
98 3300042876 Ga0451577_0084456 Ga0451577_0084456_965_2776 603
99 3300044712 Ga0453684_0000021 Ga0453684_0000021_273082_274893 603
100 3300044712 Ga0453684_0071214 Ga0453684_0071214_2478_4292 603
101 3300009147 Ga0114129_10006550 Ga0114129_100065504 604
102 3300031665 Ga0316575_10001257 Ga0316575_100012575 604
103 3300031691 Ga0316579_10006368 Ga0316579_100063682 604
104 3300031727 Ga0316576_10003768 Ga0316576_100037686 604
105 3300031733 Ga0316577_10000788 Ga0316577_100007889 604
106 3300031733 Ga0316577_10003056 Ga0316577_100030565 604
107 3300031733 Ga0316577_10042732 Ga0316577_100427322 604
108 3300032137 Ga0316585_10011830 Ga0316585_100118302 604
109 3300035398 Ga0316574_0012959 Ga0316574_0012959_2472_4298 604
110 3300036647 Ga0316582_0002521 Ga0316582_0002521_205_2031 604
111 3300036647 Ga0316582_0008611 Ga0316582_0008611_2684_4510 604
112 3300036712 Ga0316584_0018634 Ga0316584_0018634_1171_2991 604
113 3300036712 Ga0316584_0062358 Ga0316584_0062358_454_2280 604
114 3300037588 Ga0316581_0001793 Ga0316581_0001793_338_2164 604
115 3300037588 Ga0316581_0003244 Ga0316581_0003244_1989_3815 604
116 3300050507 nmdc:mga05p37_76469_c1 nmdc:mga05p37_76469_c1_799_2640 604
117 3300005471 Ga0070698_100077737 Ga0070698_1000777371 605
118 3300036647 Ga0316582_0000744 Ga0316582_0000744_9398_11218 605
119 3300031733 Ga0316577_10005856 Ga0316577_100058562 608
120 3300036647 Ga0316582_0031212 Ga0316582_0031212_568_2418 608
121 3300044712 Ga0453684_0062474 Ga0453684_0062474_853_2694 608
122 3300036712 Ga0316584_0040258 Ga0316584_0040258_396_2357 609
123 3300005289 Ga0065704_10000677 Ga0065704_100006772 611
124 3300005295 Ga0065707_10000513 Ga0065707_1000051339 611
125 3300005295 Ga0065707_10005006 Ga0065707_100050063 611
126 3300005295 Ga0065707_10098304 Ga0065707_100983042 611
127 3300005471 Ga0070698_100043347 Ga0070698_1000433472 611
128 3300006871 Ga0075434_100068901 Ga0075434_1000689012 611
129 3300006880 Ga0075429_100103932 Ga0075429_1001039322 611
130 3300009147 Ga0114129_10056264 Ga0114129_100562643 611
131 3300028653 Ga0265323_10006348 Ga0265323_100063482 611
132 3300032002 Ga0307416_100088848 Ga0307416_1000888481 611
133 3300044712 Ga0453684_0001558 Ga0453684_0001558_45758_47596 611
134 3300044712 Ga0453684_0005712 Ga0453684_0005712_3339_5174 611
135 3300044712 Ga0453684_0012262 Ga0453684_0012262_2080_3930 611
136 3300044712 Ga0453684_0015776 Ga0453684_0015776_2023_3873 611
137 3300044712 Ga0453684_0021500 Ga0453684_0021500_1172_3007 611
138 3300044712 Ga0453684_0029331 Ga0453684_0029331_716_2599 611
139 3300044712 Ga0453684_0050534 Ga0453684_0050534_1276_3114 611
140 3300044712 Ga0453684_0109569 Ga0453684_0109569_478_2313 611
141 3300045051 Ga0451576_0166115 Ga0451576_0166115_230_2065 611
142 3300050507 nmdc:mga05p37_1149_c1 nmdc:mga05p37_1149_c1_1024_2865 611
143 3300050507 nmdc:mga05p37_12767_c1 nmdc:mga05p37_12767_c1_3090_5057 611
144 3300050515 nmdc:mga0a205_38109_c1 nmdc:mga0a205_38109_c1_796_2745 611
145 3300028800 Ga0265338_10039269 Ga0265338_100392694 612
146 3300028654 Ga0265322_10011321 Ga0265322_100113212 613
147 3300045051 Ga0451576_0001318 Ga0451576_0001318_21649_23490 613
148 3300044673 Ga0453683_0000679 Ga0453683_0000679_17353_19197 614
149 3300044673 Ga0453683_0005534 Ga0453683_0005534_140_1984 614
150 3300044712 Ga0453684_0000044 Ga0453684_0000044_431443_433287 614
151 3300003203 JGI25406J46586_10001227 JGI25406J46586_100012271 615
152 3300005471 Ga0070698_100057864 Ga0070698_1000578642 615
153 3300005844 Ga0068862_100140719 Ga0068862_1001407192 615
154 3300005985 Ga0081539_10012340 Ga0081539_100123406 615
155 3300006844 Ga0075428_100034935 Ga0075428_1000349351 615
156 3300006880 Ga0075429_100016477 Ga0075429_1000164774 615
157 3300009147 Ga0114129_10169483 Ga0114129_101694831 615
158 3300031852 Ga0307410_10042260 Ga0307410_100422602 615
159 3300032126 Ga0307415_100065734 Ga0307415_1000657342 615
160 3300042876 Ga0451577_0020697 Ga0451577_0020697_310_2157 615
161 3300044712 Ga0453684_0002733 Ga0453684_0002733_25007_26854 615
162 3300044712 Ga0453684_0005891 Ga0453684_0005891_1138_2991 615
163 3300044712 Ga0453684_0039422 Ga0453684_0039422_2200_4047 615
164 3300044712 Ga0453684_0108060 Ga0453684_0108060_40_1887 615
165 3300044712 Ga0453684_0157407 Ga0453684_0157407_272_2173 615
166 3300050507 nmdc:mga05p37_168545_c1 nmdc:mga05p37_168545_c1_226_2073 615
167 3300050508 nmdc:mga09592_97975_c1 nmdc:mga09592_97975_c1_485_2332 615
168 3300050510 nmdc:mga06r32_47637_c1 nmdc:mga06r32_47637_c1_2097_3944 615

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00664

ABC_membrane

ABC transporter transmembrane region

79

356

0.96

PF00005

ABC_tran

ABC transporter

419

569

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
4q7l-assembly3.cif.gz_C structure of nbd288 of tm287/288 0.948 360 598
4q7l-assembly2.cif.gz_B structure of nbd288 of tm287/288 0.9468 360 595
4q7l-assembly1.cif.gz_A structure of nbd288 of tm287/288 0.9425 360 593
6bzr-assembly2.cif.gz_A human abcc6 nbd2 in adp-bound state 0.9395 360 601
5eum-assembly1.cif.gz_A 1.8 angstrom crystal structure of atp-binding component of fused lipid transporter subunits of abc superfamily from haemophilus influenzae. 0.9329 349 600
ID Description Score Start End Superfamily
af_P9WQJ9_605_853_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9584 359 608 3.40.50.300
af_Q2FVJ2_326_574_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9568 353 604 3.40.50.300
af_Q9R1S7_1246_1490_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9515 352 594 3.40.50.300
af_Q7K6A5_1228_1417_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9514 416 598 3.40.50.300
af_A0A0P0VTT5_46_316_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9505 352 588 3.40.50.300
ID Description Score Start End GO Terms
AF-A0A7X2MGV2-F1-model_v4 ATP-binding cassette domain-containing protein 0.9443 361 602 GO:0005524
GO:0015421
GO:0016887
AF-A0A820M297-F1-model_v4 Uncharacterized protein 0.9413 355 607 GO:0005524
GO:0005743
GO:0015421
GO:0016887
GO:0090374
AF-B7Q8V1-F1-model_v4 ABC transporter, putative 0.9331 393 569 GO:0005524
GO:0016887
AF-A0A6A4LZ73-F1-model_v4 ABC transporter domain-containing protein 0.9329 386 604 GO:0005524
GO:0016020
GO:0016887
GO:0140359
AF-A0A7X2MGV2-F1-model_v4 ATP-binding cassette domain-containing protein 0.9293 361 602 GO:0005524
GO:0015421
GO:0016887

Feature Viewer

pLDDT pTM Quality
82.05 0.66 Medium
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Predicted Structure (AlphaFold2)

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