F251960

General Info

Members Datasets Scaffolds Average Seq Length
168 124 141 388

Family's Representative Sequence

Representative Sequence 3300005336|Ga0070680_100174806|Ga0070680_1001748062
Length 422
Sequence VDGLLSKENLEWKYKVRDLAEKIVRPVAAKHDREQEYPWEIQKALAKAGIFKVWIPEKYGGAGGERILNLCITVEELARTCGGVGVLFAVNALGSFPIILGGTEEQKQKWLPKLAAGETLIAYCLSEKGSGSDAASMRCRARRDGKSFIIDGEKKWTTNGGAANLYTVFAVTDPKSKTRRMSGLLVEKGAPGFTFKKYEDKMGIRCVPVVESHFHACRVPEENLLGGEEGYGFRHAMGTLDQARPGVAAQALGLAQGALDYALVYTSRRKQFGQRVIDFQAVQHMLANMATKIEAARQLVYAAARAADKGLDNLTKLSAMCKLYATDVAMEVTTDAVQLFGGYGYMRDYPIEKYMRDAKITQIYEGTNQVQKIVISRALMKEATILQSMLDPYIPQETQYVLDEGPVAPEAAAAFNVPAVRE

Samples

Sample ID Description Type Environment
1 2527291627 Frankia casuarinae Thr Isolate Nodule
2 2527291629 Frankia sp. BMG5.23 Isolate Nodule
3 2546825537 Frankia sp. CcI6 Isolate Rhizoplane
4 2576861822 Frankia sp. CeD Isolate Nodule
5 2643221567 Phycicoccus sp. Root563 Isolate Unclassified
6 2643221624 Phycicoccus sp. Root101 Isolate Unclassified
7 2643221711 Terrabacter sp. Root85 Isolate Unclassified
8 2684623036 Frankia sp. CgIM4 Isolate Nodule
9 2710264753 Frankia sp. KB5 Isolate Nodule
10 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
11 2773857924 Frankia sp. CgIS1 Isolate Nodule
12 2808606365 Phycicoccus sp. SLBN-51 Isolate Unclassified
13 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
14 2811994882 Terrabacter sp. SLBN-196 Isolate Unclassified
15 2818991318 Humibacillus xanthopallidus SLBN-155 Isolate Unclassified
16 2818991458 Terrabacter sp. 3211 Isolate Rhizosphere
17 2818991462 Terrabacter sp. 3264 Isolate Rhizosphere
18 2818991469 Terrabacter lapilli 3265 Isolate Rhizosphere
19 2857710386 Brevibacterium sp. R-73093 Isolate Unclassified
20 2870782633 Pseudonocardia eucalypti DSM 45351 Isolate Unclassified
21 2917736166 Amycolatopsis dendrobii DR6-1 Isolate Unclassified
22 2919446982 Phycicoccus sp. 3266 Isolate Rhizosphere
23 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
24 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root
25 3001889506 Janibacter sp. YIM B02568 Isolate Unclassified
26 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
27 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
28 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
29 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
30 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
31 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
32 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
33 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
34 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
35 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
36 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
37 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
38 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
39 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
40 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
41 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
42 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
43 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
44 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
45 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
46 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
47 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
48 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
49 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
50 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
51 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
52 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
62 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
63 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
64 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
65 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
66 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
67 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
68 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
69 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
70 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
71 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
72 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
73 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
74 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
75 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
76 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
77 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
78 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
79 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
80 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
81 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
82 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
83 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
84 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
85 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
86 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
87 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
88 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
89 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
90 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
91 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
92 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
93 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
94 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
95 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
96 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
97 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
98 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
99 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
100 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
101 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
102 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
103 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
106 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
108 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
111 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
112 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
113 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
114 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
115 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
116 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
117 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
118 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
119 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
120 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
121 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
122 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
123 637000116 Frankia casuarinae CcI3 Isolate Nodule
124 8056060235 Nocardiopsis endophytica RSe5-2 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 81.55
Metatranscriptomes 2.38
Isolates 16.07

Biome Distribution

Category Percentage (%)
Aerial Root 1.19
Bulb 0
Endosphere 1.19
Nodule 4.17
Rhizoplane 20.24
Rhizosphere 63.69
Stem 0
Stem Tuber 0
Unclassified 9.52

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0006562J51391_1062217 3300003578 Bacteria 3038
2 Ga0070658_10236987 3300005327 Bacteria 1546
3 Ga0070666_10000450 3300005335 Bacteria 25018
4 Ga0070680_100174806 3300005336 Bacteria 1808
5 Ga0070667_100155446 3300005367 Bacteria 2011
6 Ga0070711_100200937 3300005439 Bacteria 1538
7 Ga0070702_100009965 3300005615 Bacteria 4664
8 Ga0068852_100140663 3300005616 Bacteria 2233
9 Ga0081539_10024499 3300005985 Bacteria 3911
10 Ga0081539_10024571 3300005985 Bacteria 3904
11 Ga0075365_10004130 3300006038 Bacteria 7634
12 Ga0075428_100045572 3300006844 Bacteria 4818
13 Ga0075430_100152412 3300006846 Bacteria 1925
14 Ga0075431_100057734 3300006847 Bacteria 4003
15 Ga0075433_10000235 3300006852 Bacteria 31710
16 Ga0075433_10140680 3300006852 Bacteria 2145
17 Ga0111539_10056230 3300009094 Bacteria 4677
18 Ga0105245_10102811 3300009098 Bacteria 2646
19 Ga0105243_10141901 3300009148 Bacteria 2050
20 Ga0105242_10030674 3300009176 Bacteria 4293
21 Ga0105248_10062682 3300009177 Bacteria 4174
22 Ga0105248_10208627 3300009177 Bacteria 2201
23 Ga0157369_10018174 3300013105 Bacteria 7886
24 Ga0157378_10008104 3300013297 Bacteria 9168
25 Ga0163162_10268857 3300013306 Bacteria 1836
26 Ga0157375_10095993 3300013308 Bacteria 3036
27 Ga0163163_10245952 3300014325 Bacteria 1839
28 Ga0163161_10102432 3300017792 Bacteria 2132
29 Ga0163161_10160770 3300017792 Bacteria 1713
30 Ga0163161_10222879 3300017792 Bacteria 1461
31 Ga0206354_11448943 3300020081 Bacteria 1528
32 Ga0207680_10002626 3300025903 Bacteria 8393
33 Ga0207663_10094441 3300025916 Bacteria 1993
34 Ga0207686_10146983 3300025934 Bacteria 1636
35 Ga0207691_10279638 3300025940 Bacteria 1436
36 Ga0207711_10144979 3300025941 Bacteria 2139
37 Ga0207675_100374857 3300026118 Bacteria 1398
38 Ga0207683_10050782 3300026121 Bacteria 3633
39 Ga0207698_10088756 3300026142 Bacteria 2523
40 Ga0268266_10152871 3300028379 Bacteria 2082
41 Ga0265336_10001507 3300028666 Bacteria 10521
42 Ga0307515_10120894 3300028794 Bacteria 2967
43 Ga0265338_10003320 3300028800 Bacteria 22762
44 Ga0316577_10009609 3300031733 Bacteria 5206
45 Ga0307407_10007793 3300031903 Bacteria 4873
46 Ga0307412_10020903 3300031911 Bacteria 3990
47 Ga0307409_100017122 3300031995 Bacteria 4820
48 Ga0307409_100045806 3300031995 Bacteria 3305
49 Ga0307409_100096113 3300031995 Bacteria 2443
50 Ga0307411_10252649 3300032005 Bacteria 1387
51 Ga0307415_100085830 3300032126 Bacteria 2263
52 Ga0307415_100093114 3300032126 Bacteria 2187
53 Ga0316580_10008737 3300032139 Bacteria 3041
54 Ga0316596_1000774 3300033541 Bacteria 5871
55 Ga0316596_1026410 3300033541 Bacteria 1497
56 Ga0316574_0173171 3300035398 Bacteria 1389
57 Ga0373937_0006534 3300036401 Bacteria 10071
58 Ga0395899_0003515 3300037312 Bacteria 12422
59 Ga0395899_0111085 3300037312 Bacteria 1971
60 Ga0395900_0316184 3300037418 Bacteria 1543
61 Ga0395905_0215490 3300037471 Bacteria 1798
62 Ga0395901_0006746 3300038443 Bacteria 11594
63 Ga0395901_0063401 3300038443 Bacteria 3846
64 Ga0400486_28732 3300038742 Bacteria 31623
65 Ga0439457_007928 3300042014 Bacteria 2524
66 Ga0439434_0006043 3300042435 Bacteria 3532
67 Ga0451577_0000229 3300042876 Bacteria 114275
68 Ga0451577_0002507 3300042876 Bacteria 21761
69 Ga0453683_0000737 3300044673 Bacteria 33476
70 Ga0453684_0000740 3300044712 Bacteria 114275
71 Ga0453684_0004313 3300044712 Bacteria 30304
72 Ga0453684_0006051 3300044712 Bacteria 23378
73 Ga0453684_0046132 3300044712 Bacteria 5802
74 Ga0453684_0200777 3300044712 Bacteria 2325
75 Ga0466957_0059598 3300044842 Bacteria 2340
76 Ga0466958_0174561 3300045836 Bacteria 1362
77 Ga0466967_0018289 3300045976 Bacteria 5596
78 Ga0466967_0483301 3300045976 Bacteria 1214
79 Ga0495629_0083528 3300046459 Bacteria 2229
80 Ga0495641_0028591 3300046461 Bacteria 2697
81 Ga0495668_0085321 3300046616 Bacteria 1732
82 Ga0496100_0024526 3300048903 Bacteria 3679
83 Ga0496100_0122854 3300048903 Bacteria 1819
84 Ga0496101_0046675 3300048904 Bacteria 3107
85 Ga0496101_0207954 3300048904 Bacteria 1515
86 Ga0496101_0269383 3300048904 Bacteria 1329
87 Ga0496102_0015092 3300048905 Bacteria 6725
88 Ga0496102_0019532 3300048905 Bacteria 5969
89 Ga0496102_0134702 3300048905 Bacteria 2314
90 Ga0496103_0008888 3300048906 Bacteria 5959
91 Ga0496103_0108878 3300048906 Bacteria 1758
92 Ga0496104_0029567 3300048907 Bacteria 5083
93 Ga0496104_0037004 3300048907 Bacteria 4564
94 Ga0496104_0048168 3300048907 Bacteria 4018
95 Ga0496104_0311623 3300048907 Bacteria 1487
96 Ga0496105_0014621 3300048908 Bacteria 6250
97 Ga0496106_0073958 3300048909 Bacteria 2608
98 Ga0496109_0037003 3300048912 Bacteria 4408
99 Ga0496109_0091986 3300048912 Bacteria 2805
100 Ga0496109_0222080 3300048912 Bacteria 1777
101 Ga0496109_0251013 3300048912 Bacteria 1666
102 Ga0496109_0259192 3300048912 Bacteria 1638
103 Ga0496110_0051594 3300048913 Bacteria 3615
104 Ga0496110_0156211 3300048913 Bacteria 2066
105 Ga0496111_0030045 3300048914 Bacteria 3863
106 Ga0496111_0097236 3300048914 Bacteria 2161
107 Ga0496113_0013165 3300048916 Bacteria 5590
108 Ga0496114_0014756 3300048917 Bacteria 6278
109 Ga0496114_0019561 3300048917 Bacteria 5486
110 Ga0496114_0021251 3300048917 Bacteria 5278
111 Ga0496114_0069299 3300048917 Bacteria 2961
112 Ga0496114_0085239 3300048917 Bacteria 2676
113 Ga0496114_0112249 3300048917 Bacteria 2336
114 Ga0496115_0044603 3300048918 Bacteria 3538
115 Ga0501031_0005557 3300049568 Bacteria 8210
116 Ga0501031_0142139 3300049568 Bacteria 1569
117 Ga0501032_0036907 3300049569 Bacteria 3335
118 Ga0501036_0168125 3300049572 Bacteria 1848
119 Ga0501037_0091491 3300049573 Bacteria 2200
120 Ga0501039_0058340 3300049575 Bacteria 2989
121 Ga0501039_0269264 3300049575 Bacteria 1339
122 Ga0501040_0145873 3300049576 Bacteria 1668
123 Ga0501043_0171465 3300049579 Bacteria 1693
124 Ga0501046_0023486 3300049580 Bacteria 5072
125 Ga0501070_0048701 3300049586 Bacteria 3520
126 Ga0501071_0111498 3300049587 Bacteria 2022
127 Ga0501072_0010824 3300049588 Bacteria 6950
128 Ga0501074_0145848 3300049590 Bacteria 1693
129 Ga0501074_0207005 3300049590 Bacteria 1398
130 Ga0501077_0021536 3300049593 Bacteria 4080
131 Ga0501077_0143230 3300049593 Bacteria 1516
132 Ga0501081_0165219 3300049743 Bacteria 1596
133 Ga0501045_0007326 3300049824 Bacteria 7669
134 Ga0501045_0008161 3300049824 Bacteria 7295
135 nmdc:mga0a205_105343_c1 3300050515 Bacteria 2719
136 nmdc:mga0a205_44_c3 3300050515 Bacteria 32149
137 Ga0495619_0154017 3300053085 Bacteria 1586
138 Ga0500620_008748 3300053155 Bacteria 2576
139 Ga0501084_0323648 3300054114 Bacteria 1302
140 Ga0530510_0011522 3300061734 Bacteria 6204
141 Ga0530510_0067188 3300061734 Bacteria 2600

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300037471 Ga0395905_0215490 Ga0395905_0215490_804_1787 326
2 3300028794 Ga0307515_10120894 Ga0307515_101208942 367
3 3300049575 Ga0501039_0269264 Ga0501039_0269264_150_1310 367
4 3300049587 Ga0501071_0111498 Ga0501071_0111498_154_1314 367
5 3300054114 Ga0501084_0323648 Ga0501084_0323648_53_1213 367
6 3300061734 Ga0530510_0011522 Ga0530510_0011522_1303_2463 367
7 3300005336 Ga0070680_100174806 Ga0070680_1001748062 378
8 3300006844 Ga0075428_100045572 Ga0075428_1000455722 378
9 3300006846 Ga0075430_100152412 Ga0075430_1001524122 378
10 3300006847 Ga0075431_100057734 Ga0075431_1000577342 378
11 3300006852 Ga0075433_10000235 Ga0075433_100002355 378
12 3300006852 Ga0075433_10140680 Ga0075433_101406802 378
13 3300009094 Ga0111539_10056230 Ga0111539_100562302 378
14 3300033541 Ga0316596_1000774 Ga0316596_10007743 378
15 3300033541 Ga0316596_1026410 Ga0316596_10264102 378
16 3300042876 Ga0451577_0000229 Ga0451577_0000229_65482_66636 378
17 3300044673 Ga0453683_0000737 Ga0453683_0000737_27532_28686 378
18 3300044712 Ga0453684_0000740 Ga0453684_0000740_65482_66636 378
19 3300044712 Ga0453684_0004313 Ga0453684_0004313_20236_21390 378
20 3300044712 Ga0453684_0006051 Ga0453684_0006051_21983_23131 378
21 3300044712 Ga0453684_0046132 Ga0453684_0046132_2794_3942 378
22 3300044712 Ga0453684_0200777 Ga0453684_0200777_928_2154 378
23 3300050515 nmdc:mga0a205_105343_c1 nmdc:mga0a205_105343_c1_175_1443 378
24 3300050515 nmdc:mga0a205_44_c3 nmdc:mga0a205_44_c3_9143_10411 378
25 iso_pu_bacteria 2857710386 2857712627 378
26 3300005335 Ga0070666_10000450 Ga0070666_1000045019 379
27 3300005367 Ga0070667_100155446 Ga0070667_1001554461 379
28 3300005439 Ga0070711_100200937 Ga0070711_1002009371 379
29 3300009177 Ga0105248_10062682 Ga0105248_100626823 379
30 3300009177 Ga0105248_10208627 Ga0105248_102086273 379
31 3300025903 Ga0207680_10002626 Ga0207680_100026261 379
32 3300025916 Ga0207663_10094441 Ga0207663_100944412 379
33 3300025941 Ga0207711_10144979 Ga0207711_101449793 379
34 3300028666 Ga0265336_10001507 Ga0265336_100015074 379
35 3300028800 Ga0265338_10003320 Ga0265338_1000332016 379
36 3300036401 Ga0373937_0006534 Ga0373937_0006534_82_1242 379
37 3300042876 Ga0451577_0002507 Ga0451577_0002507_12597_13799 379
38 3300048917 Ga0496114_0085239 Ga0496114_0085239_1456_2616 379
39 iso_pu_bacteria 2917736166 2917743229 379
40 iso_pu_bacteria 8056060235 8056061650 379
41 iso_pu_bacteria 2984576629 2984579640 380
42 iso_pu_bacteria 2990256926 2990257247 380
43 iso_pu_bacteria 2773857762 2774391841 381
44 iso_pu_bacteria 2811994878 2812352250 381
45 iso_pu_bacteria 2870782633 2870786266 381
46 iso_pu_bacteria 2527291627 2528204128 382
47 iso_pu_bacteria 2527291629 2528214259 382
48 iso_pu_bacteria 2546825537 2546949199 382
49 iso_pu_bacteria 2576861822 2579748266 382
50 iso_pu_bacteria 2684623036 2686540843 382
51 iso_pu_bacteria 2710264753 2710606364 382
52 iso_pu_bacteria 2773857924 2774863704 382
53 iso_pu_bacteria 637000116 637878886 382
54 3300005985 Ga0081539_10024499 Ga0081539_100244992 383
55 3300028379 Ga0268266_10152871 Ga0268266_101528711 383
56 3300031911 Ga0307412_10020903 Ga0307412_100209035 383
57 iso_pu_bacteria 2643221711 2644611289 383
58 iso_pu_bacteria 2811994882 2812375600 383
59 iso_pu_bacteria 2818991318 2819424467 383
60 iso_pu_bacteria 2818991458 2819668141 383
61 iso_pu_bacteria 2818991462 2819691998 383
62 iso_pu_bacteria 2818991469 2819729741 383
63 iso_pu_bacteria 2919446982 2919447661 383
64 iso_pu_bacteria 3001889506 3001892041 383
65 3300037312 Ga0395899_0003515 Ga0395899_0003515_4644_5813 384
66 3300045976 Ga0466967_0018289 Ga0466967_0018289_824_1990 384
67 3300046616 Ga0495668_0085321 Ga0495668_0085321_199_1353 384
68 iso_pu_bacteria 2643221567 2643852862 384
69 iso_pu_bacteria 2643221624 2644135371 384
70 iso_pu_bacteria 2808606365 2808875220 384
71 3300031995 Ga0307409_100017122 Ga0307409_1000171224 385
72 3300032005 Ga0307411_10252649 Ga0307411_102526492 385
73 3300053155 Ga0500620_008748 Ga0500620_008748_123_1280 385
74 3300005985 Ga0081539_10024571 Ga0081539_100245713 386
75 3300006038 Ga0075365_10004130 Ga0075365_100041304 386
76 3300009098 Ga0105245_10102811 Ga0105245_101028112 386
77 3300026121 Ga0207683_10050782 Ga0207683_100507821 386
78 3300038443 Ga0395901_0006746 Ga0395901_0006746_38_1198 386
79 3300042435 Ga0439434_0006043 Ga0439434_0006043_1904_3070 386
80 3300044842 Ga0466957_0059598 Ga0466957_0059598_1025_2194 386
81 3300046459 Ga0495629_0083528 Ga0495629_0083528_516_1676 386
82 3300048907 Ga0496104_0311623 Ga0496104_0311623_152_1315 386
83 3300048912 Ga0496109_0037003 Ga0496109_0037003_955_2118 386
84 3300048913 Ga0496110_0051594 Ga0496110_0051594_622_1785 386
85 3300048917 Ga0496114_0021251 Ga0496114_0021251_1210_2370 386
86 3300003578 Ga0006562J51391_1062217 Ga0006562J51391_10622172 387
87 3300005327 Ga0070658_10236987 Ga0070658_102369871 387
88 3300005615 Ga0070702_100009965 Ga0070702_1000099653 387
89 3300005616 Ga0068852_100140663 Ga0068852_1001406632 387
90 3300009148 Ga0105243_10141901 Ga0105243_101419013 387
91 3300009176 Ga0105242_10030674 Ga0105242_100306744 387
92 3300013105 Ga0157369_10018174 Ga0157369_100181746 387
93 3300013297 Ga0157378_10008104 Ga0157378_1000810410 387
94 3300013306 Ga0163162_10268857 Ga0163162_102688571 387
95 3300013308 Ga0157375_10095993 Ga0157375_100959933 387
96 3300014325 Ga0163163_10245952 Ga0163163_102459521 387
97 3300017792 Ga0163161_10102432 Ga0163161_101024322 387
98 3300017792 Ga0163161_10160770 Ga0163161_101607703 387
99 3300017792 Ga0163161_10222879 Ga0163161_102228792 387
100 3300020081 Ga0206354_11448943 Ga0206354_114489431 387
101 3300025934 Ga0207686_10146983 Ga0207686_101469832 387
102 3300025940 Ga0207691_10279638 Ga0207691_102796382 387
103 3300026118 Ga0207675_100374857 Ga0207675_1003748572 387
104 3300026142 Ga0207698_10088756 Ga0207698_100887563 387
105 3300031733 Ga0316577_10009609 Ga0316577_100096093 387
106 3300031903 Ga0307407_10007793 Ga0307407_100077933 387
107 3300031995 Ga0307409_100045806 Ga0307409_1000458063 387
108 3300031995 Ga0307409_100096113 Ga0307409_1000961132 387
109 3300032126 Ga0307415_100085830 Ga0307415_1000858301 387
110 3300032126 Ga0307415_100093114 Ga0307415_1000931142 387
111 3300032139 Ga0316580_10008737 Ga0316580_100087372 387
112 3300035398 Ga0316574_0173171 Ga0316574_0173171_41_1216 387
113 3300037312 Ga0395899_0111085 Ga0395899_0111085_119_1285 387
114 3300037418 Ga0395900_0316184 Ga0395900_0316184_238_1404 387
115 3300038443 Ga0395901_0063401 Ga0395901_0063401_1049_2215 387
116 3300038742 Ga0400486_28732 Ga0400486_28732_20166_21344 387
117 3300042014 Ga0439457_007928 Ga0439457_007928_937_2100 387
118 3300045836 Ga0466958_0174561 Ga0466958_0174561_79_1245 387
119 3300045976 Ga0466967_0483301 Ga0466967_0483301_16_1188 387
120 3300046461 Ga0495641_0028591 Ga0495641_0028591_971_2140 387
121 3300048903 Ga0496100_0024526 Ga0496100_0024526_239_1402 387
122 3300048903 Ga0496100_0122854 Ga0496100_0122854_583_1749 387
123 3300048904 Ga0496101_0046675 Ga0496101_0046675_1676_2839 387
124 3300048904 Ga0496101_0207954 Ga0496101_0207954_178_1341 387
125 3300048904 Ga0496101_0269383 Ga0496101_0269383_43_1209 387
126 3300048905 Ga0496102_0015092 Ga0496102_0015092_4189_5355 387
127 3300048905 Ga0496102_0019532 Ga0496102_0019532_4317_5480 387
128 3300048905 Ga0496102_0134702 Ga0496102_0134702_1058_2224 387
129 3300048906 Ga0496103_0008888 Ga0496103_0008888_930_2096 387
130 3300048906 Ga0496103_0108878 Ga0496103_0108878_268_1431 387
131 3300048907 Ga0496104_0029567 Ga0496104_0029567_402_1565 387
132 3300048907 Ga0496104_0037004 Ga0496104_0037004_216_1391 387
133 3300048907 Ga0496104_0048168 Ga0496104_0048168_2719_3882 387
134 3300048908 Ga0496105_0014621 Ga0496105_0014621_3975_5138 387
135 3300048909 Ga0496106_0073958 Ga0496106_0073958_666_1832 387
136 3300048912 Ga0496109_0091986 Ga0496109_0091986_903_2078 387
137 3300048912 Ga0496109_0222080 Ga0496109_0222080_15_1181 387
138 3300048912 Ga0496109_0251013 Ga0496109_0251013_483_1646 387
139 3300048912 Ga0496109_0259192 Ga0496109_0259192_244_1410 387
140 3300048913 Ga0496110_0156211 Ga0496110_0156211_393_1556 387
141 3300048914 Ga0496111_0030045 Ga0496111_0030045_1925_3091 387
142 3300048914 Ga0496111_0097236 Ga0496111_0097236_123_1286 387
143 3300048916 Ga0496113_0013165 Ga0496113_0013165_2353_3519 387
144 3300048917 Ga0496114_0014756 Ga0496114_0014756_4763_5938 387
145 3300048917 Ga0496114_0019561 Ga0496114_0019561_4309_5472 387
146 3300048917 Ga0496114_0069299 Ga0496114_0069299_1252_2415 387
147 3300048917 Ga0496114_0112249 Ga0496114_0112249_688_1851 387
148 3300048918 Ga0496115_0044603 Ga0496115_0044603_853_2019 387
149 3300049568 Ga0501031_0005557 Ga0501031_0005557_1167_2333 387
150 3300049568 Ga0501031_0142139 Ga0501031_0142139_121_1287 387
151 3300049569 Ga0501032_0036907 Ga0501032_0036907_1439_2605 387
152 3300049572 Ga0501036_0168125 Ga0501036_0168125_246_1412 387
153 3300049573 Ga0501037_0091491 Ga0501037_0091491_489_1655 387
154 3300049575 Ga0501039_0058340 Ga0501039_0058340_443_1609 387
155 3300049576 Ga0501040_0145873 Ga0501040_0145873_252_1466 387
156 3300049579 Ga0501043_0171465 Ga0501043_0171465_292_1467 387
157 3300049580 Ga0501046_0023486 Ga0501046_0023486_21_1187 387
158 3300049586 Ga0501070_0048701 Ga0501070_0048701_922_2088 387
159 3300049588 Ga0501072_0010824 Ga0501072_0010824_911_2077 387
160 3300049590 Ga0501074_0145848 Ga0501074_0145848_190_1365 387
161 3300049590 Ga0501074_0207005 Ga0501074_0207005_189_1355 387
162 3300049593 Ga0501077_0021536 Ga0501077_0021536_2136_3302 387
163 3300049593 Ga0501077_0143230 Ga0501077_0143230_36_1211 387
164 3300049743 Ga0501081_0165219 Ga0501081_0165219_379_1545 387
165 3300049824 Ga0501045_0007326 Ga0501045_0007326_4735_5901 387
166 3300049824 Ga0501045_0008161 Ga0501045_0008161_323_1537 387
167 3300053085 Ga0495619_0154017 Ga0495619_0154017_297_1463 387
168 3300061734 Ga0530510_0067188 Ga0530510_0067188_1006_2172 387

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00441

Acyl-CoA_dh_1

Acyl-CoA dehydrogenase, C-terminal domain

230

380

0.98

PF08028

Acyl-CoA_dh_2

Acyl-CoA dehydrogenase, C-terminal domain

246

369

0.96

PF02771

Acyl-CoA_dh_N

Acyl-CoA dehydrogenase, N-terminal domain

6

118

0.95

PF02770

Acyl-CoA_dh_M

Acyl-CoA dehydrogenase, middle domain

122

217

0.93

PF22924

ACOX_C_alpha1

Acyl-CoA oxidase, C-alpha1 domain

237

380

0.82

Structural Annotation

Top 5 Hits

ID Description Score Start End
3pfd-assembly5.cif.gz_D crystal structure of an acyl-coa dehydrogenase from mycobacterium thermoresistibile bound to reduced flavin adenine dinucleotide solved by combined iodide ion sad mr 0.9793 16 387
3pfd-assembly4.cif.gz_C crystal structure of an acyl-coa dehydrogenase from mycobacterium thermoresistibile bound to reduced flavin adenine dinucleotide solved by combined iodide ion sad mr 0.979 16 387
3pfd-assembly1.cif.gz_A crystal structure of an acyl-coa dehydrogenase from mycobacterium thermoresistibile bound to reduced flavin adenine dinucleotide solved by combined iodide ion sad mr 0.9784 16 387
7w0j-assembly1.cif.gz_A acyl-coa dehydrogenase, tfu_1647 0.9779 9 387
7w0j-assembly1.cif.gz_F acyl-coa dehydrogenase, tfu_1647 0.9778 9 387
ID Description Score Start End Superfamily
3pfdA01 Mainly Alpha;Orthogonal Bundle;Butyryl-Coa Dehydrogenase, subunit A; domain 1;Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.9978 16 126 1.10.540.10
3pfdA01 Mainly Alpha;Orthogonal Bundle;Butyryl-Coa Dehydrogenase, subunit A; domain 1;Acyl-CoA dehydrogenase/oxidase, N-terminal domain 0.9802 16 126 1.10.540.10
af_P96397_240_357_1.20.140.10 Mainly Alpha;Up-down Bundle;Butyryl-CoA Dehydrogenase, subunit A; domain 3;Butyryl-CoA Dehydrogenase, subunit A, domain 3 0.9666 243 359 1.20.140.10
6fahC02 Mainly Beta;Beta Barrel;Butyryl-CoA Dehydrogenase, subunit A; domain 2;Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.9652 128 244 2.40.110.10
af_Q9D7B6_155_263_2.40.110.10 Mainly Beta;Beta Barrel;Butyryl-CoA Dehydrogenase, subunit A; domain 2;Butyryl-CoA Dehydrogenase, subunit A, domain 2 0.9639 129 238 2.40.110.10
ID Description Score Start End GO Terms
AF-A0A2S8MMP0-F1-model_v4 deleted 0.9815 77 221
AF-A0A7C7L8F3-F1-model_v4 Acyl-CoA dehydrogenase 0.9784 10 271 GO:0003995
GO:0050660
AF-X1C3I3-F1-model_v4 Acyl-CoA dehydrogenase 0.9772 73 328 GO:0003995
GO:0050660
AF-A0A7Y6EYD0-F1-model_v4 Acyl-CoA dehydrogenase 0.9765 1 383 GO:0003995
GO:0050660
AF-X1PRZ4-F1-model_v4 Acyl-CoA dehydrogenase 0.9758 81 344 GO:0003995
GO:0050660

Feature Viewer

pLDDT pTM Quality
92.52 0.92 High
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Predicted Structure (AlphaFold2)

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