F251808

General Info

Members Datasets Scaffolds Average Seq Length
168 102 168 387

Family's Representative Sequence

Representative Sequence 3300005293|Ga0065715_10139829|Ga0065715_101398292
Length 400
Sequence MALGWLNIYGTRTSLARLFKPMQLSTSSTKALNDYFHSRQDAVVAFARALVETESPSGDEAGSKAVVSLISRVTTIERVASENYGEHLRVTAFGESREKPIVILGHTDTVHPRNSLRQRPWRLEGNRAYGPGVFDMKANCALAIELLQACVATSLTPKRPVVLLLTCDEETGSRTGKQLVEAASRRAHAVLVLEPPGNGGRAKTGRKGTGVFTIEARGCAAHAGLEPERGASAILELARQTERLHSFNGSSGGISVNVGVFQGGTLSNVVSAAARAEVDVRFSNSDEATRIENEIFNLRPYDERVQLIVKGGINRPPLERNEKVLGLYDQAKALALQLNFKLGEIQVGGASDGNFAAAAGAAVLDGLGIDGDGAHAVHEHIIVDDIPRRGALLAALITTL

Samples

Sample ID Description Type Environment
1 3300002074 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S1 Metagenome Rhizosphere
2 3300002239 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA, with PhiX - S2 Metagenome Rhizosphere
3 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
4 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
5 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
6 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
7 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
8 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
9 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
10 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
11 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
12 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
13 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
14 3300005406 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG Metagenome Rhizosphere
15 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
16 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
17 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
18 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
19 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
20 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
21 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
22 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
23 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
24 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
25 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
26 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
27 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
28 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
29 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
30 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
31 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
32 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
33 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
34 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
35 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
36 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
37 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
38 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
39 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
40 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
41 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
42 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
43 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
44 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
45 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
46 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
48 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
49 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
50 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
51 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
52 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
53 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
54 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
55 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
56 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
57 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
58 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
59 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
60 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
61 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
62 3300025885 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025905 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
85 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
86 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
88 3300038996 Genetically engineered switchgrass root microbial communities from Knoxville, USA - plot19 Metagenome Rhizosphere
89 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
90 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
91 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
92 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
93 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
94 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
95 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
96 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
97 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
98 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
99 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
100 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
101 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
102 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.6
Nodule 0
Rhizoplane 1.19
Rhizosphere 97.62
Stem 0
Stem Tuber 0
Unclassified 0.6

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24748J21848_1000012 3300002074 Bacteria 152599
2 JGI24034J26672_10000003 3300002239 Bacteria 501747
3 Ga0065715_10139829 3300005293 Bacteria 1870
4 Ga0065715_10159139 3300005293 Bacteria 1646
5 Ga0065707_10002537 3300005295 Bacteria 4472
6 Ga0068869_100017396 3300005334 Unclassified 4871
7 Ga0070680_100003425 3300005336 Bacteria 11842
8 Ga0070680_100007465 3300005336 Bacteria 8340
9 Ga0070682_100000114 3300005337 Bacteria 71510
10 Ga0070660_100331316 3300005339 Unclassified 1252
11 Ga0070687_100130406 3300005343 Unclassified 1451
12 Ga0070661_100042633 3300005344 Bacteria 3313
13 Ga0070669_100083935 3300005353 Unclassified 2376
14 Ga0070688_100054448 3300005365 Bacteria 2506
15 Ga0070659_100001309 3300005366 Bacteria 18032
16 Ga0070703_10000023 3300005406 Bacteria 74686
17 Ga0070705_100144784 3300005440 Bacteria 1569
18 Ga0070694_100000186 3300005444 Bacteria 32580
19 Ga0070708_100103743 3300005445 Unclassified 2607
20 Ga0070681_10001112 3300005458 Bacteria 23022
21 Ga0070681_10001385 3300005458 Bacteria 21249
22 Ga0070706_100005188 3300005467 Bacteria 12427
23 Ga0070706_100009215 3300005467 Bacteria 9194
24 Ga0070706_100045793 3300005467 Bacteria 4039
25 Ga0070706_100158605 3300005467 Bacteria 2112
26 Ga0070706_100213801 3300005467 Bacteria 1800
27 Ga0070707_100000128 3300005468 Bacteria 71110
28 Ga0070707_100073867 3300005468 Bacteria 3288
29 Ga0070707_100122108 3300005468 Bacteria 2529
30 Ga0070707_100256407 3300005468 Bacteria 1702
31 Ga0070707_100309577 3300005468 Bacteria 1535
32 Ga0070698_100000010 3300005471 Bacteria 117353
33 Ga0070698_100008549 3300005471 Bacteria 11049
34 Ga0070698_100015758 3300005471 Bacteria 7984
35 Ga0070698_100105526 3300005471 Unclassified 2787
36 Ga0070698_100261446 3300005471 Bacteria 1663
37 Ga0070679_100000253 3300005530 Bacteria 44883
38 Ga0070679_100007171 3300005530 Bacteria 10407
39 Ga0070697_100000067 3300005536 Bacteria 83699
40 Ga0070697_100000451 3300005536 Bacteria 31549
41 Ga0070697_100018652 3300005536 Bacteria 5473
42 Ga0070697_100120571 3300005536 Bacteria 2194
43 Ga0068853_100034721 3300005539 Bacteria 4281
44 Ga0070686_100017102 3300005544 Bacteria 4232
45 Ga0070696_100153731 3300005546 Unclassified 1691
46 Ga0070704_100033839 3300005549 Bacteria 3459
47 Ga0070704_100244820 3300005549 Bacteria 1469
48 Ga0070664_100001032 3300005564 Bacteria 21889
49 Ga0070664_100208362 3300005564 Bacteria 1746
50 Ga0068857_100013003 3300005577 Bacteria 7251
51 Ga0068856_100002458 3300005614 Bacteria 19071
52 Ga0070702_100170859 3300005615 Unclassified 1414
53 Ga0068859_100024904 3300005617 Bacteria 6007
54 Ga0068864_100159090 3300005618 Bacteria 2052
55 Ga0068861_100159182 3300005719 Bacteria 1861
56 Ga0068861_100356191 3300005719 Bacteria 1285
57 Ga0068858_100000052 3300005842 Bacteria 119935
58 Ga0068858_100073366 3300005842 Bacteria 3176
59 Ga0068858_100101691 3300005842 Unclassified 2681
60 Ga0068862_100027523 3300005844 Bacteria 4785
61 Ga0070715_10000069 3300006163 Bacteria 33014
62 Ga0070716_100000009 3300006173 Bacteria 173295
63 Ga0070716_100141143 3300006173 Bacteria 1536
64 Ga0075433_10099260 3300006852 Unclassified 2577
65 Ga0075433_10134143 3300006852 Bacteria 2201
66 Ga0075434_100057719 3300006871 Bacteria 3858
67 Ga0068865_100180279 3300006881 Unclassified 1626
68 Ga0075436_100000016 3300006914 Bacteria 167300
69 Ga0097620_100024906 3300006931 Bacteria 6007
70 Ga0075435_100004661 3300007076 Bacteria 9449
71 Ga0099794_10002347 3300007265 Bacteria 6960
72 Ga0111539_10034486 3300009094 Bacteria 6135
73 Ga0105245_10115998 3300009098 Unclassified 2497
74 Ga0105247_10000003 3300009101 Bacteria 694517
75 Ga0114129_10016489 3300009147 Bacteria 10517
76 Ga0114129_10025991 3300009147 Bacteria 8291
77 Ga0114129_10243431 3300009147 Unclassified 2417
78 Ga0114129_10464109 3300009147 Bacteria 1659
79 Ga0105243_10000022 3300009148 Bacteria 203002
80 Ga0105243_10002534 3300009148 Bacteria 15255
81 Ga0105243_10131045 3300009148 Bacteria 2127
82 Ga0105242_10000014 3300009176 Bacteria 129984
83 Ga0105242_10000317 3300009176 Bacteria 38636
84 Ga0105242_10013438 3300009176 Bacteria 6328
85 Ga0105248_10034153 3300009177 Bacteria 5686
86 Ga0105248_10401696 3300009177 Bacteria 1543
87 Ga0105237_10171383 3300009545 Bacteria 2170
88 Ga0105249_10000113 3300009553 Bacteria 108613
89 Ga0105239_10068386 3300010375 Unclassified 3903
90 Ga0105239_10129701 3300010375 Bacteria 2803
91 Ga0157378_10000102 3300013297 Bacteria 80804
92 Ga0157378_10022039 3300013297 Bacteria 5604
93 Ga0157378_10024395 3300013297 Bacteria 5321
94 Ga0157378_10124884 3300013297 Bacteria 2376
95 Ga0157378_10197730 3300013297 Bacteria 1900
96 Ga0163162_10000023 3300013306 Bacteria 193395
97 Ga0163162_10006053 3300013306 Bacteria 11708
98 Ga0163162_10032593 3300013306 Bacteria 5176
99 Ga0163162_10069594 3300013306 Bacteria 3571
100 Ga0157375_10008827 3300013308 Bacteria 8828
101 Ga0157375_10047107 3300013308 Bacteria 4208
102 Ga0157375_10048045 3300013308 Bacteria 4172
103 Ga0163163_10022824 3300014325 Bacteria 5931
104 Ga0163163_10027464 3300014325 Bacteria 5452
105 Ga0157380_10001669 3300014326 Bacteria 14650
106 Ga0157380_10057232 3300014326 Bacteria 3104
107 Ga0157380_10073880 3300014326 Unclassified 2766
108 Ga0157380_10196656 3300014326 Bacteria 1785
109 Ga0163161_10061614 3300017792 Bacteria 2731
110 Ga0207653_10000199 3300025885 Bacteria 40619
111 Ga0207710_10000001 3300025900 Bacteria 1797433
112 Ga0207685_10000033 3300025905 Bacteria 68415
113 Ga0207684_10148968 3300025910 Bacteria 2013
114 Ga0207707_10000142 3300025912 Bacteria 74613
115 Ga0207660_10007845 3300025917 Bacteria 6907
116 Ga0207660_10016066 3300025917 Bacteria 4949
117 Ga0207662_10025572 3300025918 Bacteria 3400
118 Ga0207662_10145362 3300025918 Bacteria 1505
119 Ga0207652_10000937 3300025921 Bacteria 27452
120 Ga0207652_10210075 3300025921 Bacteria 1752
121 Ga0207646_10001202 3300025922 Bacteria 32571
122 Ga0207646_10040621 3300025922 Bacteria 4183
123 Ga0207646_10094383 3300025922 Bacteria 2679
124 Ga0207644_10001982 3300025931 Bacteria 13245
125 Ga0207686_10000002 3300025934 Bacteria 453961
126 Ga0207686_10000167 3300025934 Bacteria 50181
127 Ga0207686_10006996 3300025934 Bacteria 6069
128 Ga0207709_10000012 3300025935 Bacteria 552803
129 Ga0207709_10001697 3300025935 Bacteria 14825
130 Ga0207709_10069655 3300025935 Bacteria 2227
131 Ga0207670_10054138 3300025936 Bacteria 2706
132 Ga0207665_10000001 3300025939 Bacteria 279842
133 Ga0207689_10014986 3300025942 Bacteria 6575
134 Ga0207689_10027800 3300025942 Unclassified 4733
135 Ga0207689_10148442 3300025942 Bacteria 1932
136 Ga0207651_10195060 3300025960 Bacteria 1618
137 Ga0207712_10001761 3300025961 Bacteria 14451
138 Ga0207712_10009964 3300025961 Bacteria 6023
139 Ga0207677_10048475 3300026023 Bacteria 2861
140 Ga0207703_10000406 3300026035 Bacteria 46246
141 Ga0207703_10061063 3300026035 Unclassified 3085
142 Ga0207708_10096854 3300026075 Bacteria 2280
143 Ga0207702_10062679 3300026078 Bacteria 3176
144 Ga0207674_10002176 3300026116 Bacteria 24790
145 Ga0207675_100002820 3300026118 Bacteria 17092
146 Ga0207675_100175050 3300026118 Bacteria 2053
147 Ga0207675_100408613 3300026118 Bacteria 1339
148 Ga0207428_10014829 3300027907 Bacteria 6750
149 Ga0268264_10143700 3300028381 Unclassified 2131
150 Ga0268264_10301890 3300028381 Bacteria 1508
151 Ga0373951_0006204 3300035091 Bacteria 2739
152 Ga0242420_013539 3300038996 Bacteria 1392
153 Ga0436365_0604552 3300039437 Bacteria 3218
154 Ga0453684_0111189 3300044712 Bacteria 3329
155 Ga0451576_0034578 3300045051 Bacteria 5366
156 Ga0495663_0000171 3300046525 Bacteria 26086
157 Ga0495621_0002429 3300046539 Bacteria 5025
158 Ga0495670_0037557 3300046691 Bacteria 2414
159 Ga0496104_0036691 3300048907 Bacteria 4583
160 Ga0496106_0001126 3300048909 Bacteria 19779
161 Ga0501079_0229630 3300049741 Unclassified 1450
162 nmdc:mga05p37_160601_c1 3300050507 Unclassified 2745
163 nmdc:mga05p37_223264_c1 3300050507 Bacteria 2273
164 nmdc:mga05p37_370892_c1 3300050507 Bacteria 1680
165 nmdc:mga0n895_72252_c1 3300050512 Bacteria 3422
166 nmdc:mga0rr50_194_c1 3300050513 Bacteria 32808
167 nmdc:mga08x19_8_c1 3300050514 Bacteria 427794
168 Ga0500616_0002137 3300053153 Bacteria 17103

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300006173 Ga0070716_100141143 Ga0070716_1001411431 362
2 3300006914 Ga0075436_100000016 Ga0075436_100000016139 362
3 3300017792 Ga0163161_10061614 Ga0163161_100616142 362
4 3300005544 Ga0070686_100017102 Ga0070686_1000171023 363
5 3300013297 Ga0157378_10024395 Ga0157378_100243953 363
6 3300005444 Ga0070694_100000186 Ga0070694_1000001861 368
7 3300005337 Ga0070682_100000114 Ga0070682_10000011434 369
8 3300053153 Ga0500616_0002137 Ga0500616_0002137_3347_4525 370
9 3300007076 Ga0075435_100004661 Ga0075435_1000046615 371
10 3300013297 Ga0157378_10197730 Ga0157378_101977302 371
11 3300050513 nmdc:mga0rr50_194_c1 nmdc:mga0rr50_194_c1_25669_26838 371
12 3300050514 nmdc:mga08x19_8_c1 nmdc:mga08x19_8_c1_256092_257261 371
13 3300007265 Ga0099794_10002347 Ga0099794_100023474 378
14 3300009098 Ga0105245_10115998 Ga0105245_101159982 378
15 3300005467 Ga0070706_100005188 Ga0070706_1000051887 379
16 3300005468 Ga0070707_100256407 Ga0070707_1002564072 379
17 3300005471 Ga0070698_100008549 Ga0070698_10000854910 379
18 3300005536 Ga0070697_100000451 Ga0070697_10000045114 379
19 3300006163 Ga0070715_10000069 Ga0070715_100000693 379
20 3300025905 Ga0207685_10000033 Ga0207685_1000003326 379
21 3300005467 Ga0070706_100158605 Ga0070706_1001586052 380
22 3300005468 Ga0070707_100073867 Ga0070707_1000738673 380
23 3300005468 Ga0070707_100122108 Ga0070707_1001221081 380
24 3300005468 Ga0070707_100309577 Ga0070707_1003095771 380
25 3300005471 Ga0070698_100105526 Ga0070698_1001055263 380
26 3300005549 Ga0070704_100033839 Ga0070704_1000338393 380
27 3300005842 Ga0068858_100101691 Ga0068858_1001016911 380
28 3300006871 Ga0075434_100057719 Ga0075434_1000577193 380
29 3300025910 Ga0207684_10148968 Ga0207684_101489682 380
30 3300025918 Ga0207662_10025572 Ga0207662_100255721 380
31 3300025922 Ga0207646_10094383 Ga0207646_100943832 380
32 3300025934 Ga0207686_10000167 Ga0207686_1000016712 380
33 3300026023 Ga0207677_10048475 Ga0207677_100484752 380
34 3300026035 Ga0207703_10061063 Ga0207703_100610634 380
35 3300028381 Ga0268264_10143700 Ga0268264_101437002 380
36 3300050512 nmdc:mga0n895_72252_c1 nmdc:mga0n895_72252_c1_1874_3043 380
37 3300005293 Ga0065715_10139829 Ga0065715_101398292 381
38 3300005719 Ga0068861_100356191 Ga0068861_1003561911 385
39 3300026118 Ga0207675_100408613 Ga0207675_1004086131 385
40 3300035091 Ga0373951_0006204 Ga0373951_0006204_1285_2448 385
41 3300005353 Ga0070669_100083935 Ga0070669_1000839352 386
42 3300005440 Ga0070705_100144784 Ga0070705_1001447841 386
43 3300005471 Ga0070698_100015758 Ga0070698_1000157583 386
44 3300005536 Ga0070697_100000067 Ga0070697_10000006750 386
45 3300005615 Ga0070702_100170859 Ga0070702_1001708592 386
46 3300005719 Ga0068861_100159182 Ga0068861_1001591822 386
47 3300013308 Ga0157375_10047107 Ga0157375_100471074 386
48 3300026118 Ga0207675_100175050 Ga0207675_1001750502 386
49 3300046525 Ga0495663_0000171 Ga0495663_0000171_689_1849 386
50 3300046539 Ga0495621_0002429 Ga0495621_0002429_359_1519 386
51 3300005336 Ga0070680_100007465 Ga0070680_1000074653 387
52 3300005339 Ga0070660_100331316 Ga0070660_1003313161 387
53 3300005344 Ga0070661_100042633 Ga0070661_1000426332 387
54 3300005366 Ga0070659_100001309 Ga0070659_1000013096 387
55 3300005406 Ga0070703_10000023 Ga0070703_1000002329 387
56 3300005445 Ga0070708_100103743 Ga0070708_1001037432 387
57 3300005458 Ga0070681_10001112 Ga0070681_100011123 387
58 3300005468 Ga0070707_100000128 Ga0070707_10000012843 387
59 3300005530 Ga0070679_100007171 Ga0070679_1000071713 387
60 3300005539 Ga0068853_100034721 Ga0068853_1000347214 387
61 3300005549 Ga0070704_100244820 Ga0070704_1002448202 387
62 3300005564 Ga0070664_100001032 Ga0070664_1000010323 387
63 3300005577 Ga0068857_100013003 Ga0068857_1000130033 387
64 3300009177 Ga0105248_10401696 Ga0105248_104016962 387
65 3300013306 Ga0163162_10006053 Ga0163162_100060534 387
66 3300014325 Ga0163163_10027464 Ga0163163_100274643 387
67 3300014326 Ga0157380_10001669 Ga0157380_1000166910 387
68 3300014326 Ga0157380_10057232 Ga0157380_100572322 387
69 3300025885 Ga0207653_10000199 Ga0207653_1000019911 387
70 3300025917 Ga0207660_10016066 Ga0207660_100160663 387
71 3300025921 Ga0207652_10210075 Ga0207652_102100752 387
72 3300025922 Ga0207646_10001202 Ga0207646_1000120219 387
73 3300026116 Ga0207674_10002176 Ga0207674_100021763 387
74 3300046691 Ga0495670_0037557 Ga0495670_0037557_516_1679 387
75 3300005295 Ga0065707_10002537 Ga0065707_100025373 388
76 3300005365 Ga0070688_100054448 Ga0070688_1000544482 388
77 3300005467 Ga0070706_100045793 Ga0070706_1000457932 388
78 3300005536 Ga0070697_100018652 Ga0070697_1000186522 388
79 3300005617 Ga0068859_100024904 Ga0068859_1000249043 388
80 3300005618 Ga0068864_100159090 Ga0068864_1001590902 388
81 3300005842 Ga0068858_100073366 Ga0068858_1000733663 388
82 3300005844 Ga0068862_100027523 Ga0068862_1000275232 388
83 3300006931 Ga0097620_100024906 Ga0097620_1000249064 388
84 3300009094 Ga0111539_10034486 Ga0111539_100344863 388
85 3300009148 Ga0105243_10000022 Ga0105243_10000022129 388
86 3300009176 Ga0105242_10000014 Ga0105242_10000014119 388
87 3300009177 Ga0105248_10034153 Ga0105248_100341532 388
88 3300014326 Ga0157380_10073880 Ga0157380_100738802 388
89 3300025918 Ga0207662_10145362 Ga0207662_101453622 388
90 3300025922 Ga0207646_10040621 Ga0207646_100406213 388
91 3300025934 Ga0207686_10000002 Ga0207686_10000002234 388
92 3300025935 Ga0207709_10000012 Ga0207709_1000001254 388
93 3300025936 Ga0207670_10054138 Ga0207670_100541382 388
94 3300025960 Ga0207651_10195060 Ga0207651_101950601 388
95 3300026075 Ga0207708_10096854 Ga0207708_100968541 388
96 3300027907 Ga0207428_10014829 Ga0207428_100148293 388
97 3300028381 Ga0268264_10301890 Ga0268264_103018901 388
98 3300049741 Ga0501079_0229630 Ga0501079_0229630_139_1308 388
99 3300050507 nmdc:mga05p37_160601_c1 nmdc:mga05p37_160601_c1_331_1497 388
100 3300005293 Ga0065715_10159139 Ga0065715_101591392 389
101 3300005334 Ga0068869_100017396 Ga0068869_1000173962 389
102 3300005336 Ga0070680_100003425 Ga0070680_1000034253 389
103 3300005343 Ga0070687_100130406 Ga0070687_1001304061 389
104 3300005458 Ga0070681_10001385 Ga0070681_100013855 389
105 3300005467 Ga0070706_100009215 Ga0070706_1000092157 389
106 3300005471 Ga0070698_100000010 Ga0070698_100000010103 389
107 3300005471 Ga0070698_100261446 Ga0070698_1002614461 389
108 3300005530 Ga0070679_100000253 Ga0070679_1000002535 389
109 3300005546 Ga0070696_100153731 Ga0070696_1001537312 389
110 3300005564 Ga0070664_100208362 Ga0070664_1002083621 389
111 3300005614 Ga0068856_100002458 Ga0068856_1000024588 389
112 3300006173 Ga0070716_100000009 Ga0070716_10000000943 389
113 3300006852 Ga0075433_10099260 Ga0075433_100992602 389
114 3300006852 Ga0075433_10134143 Ga0075433_101341432 389
115 3300006881 Ga0068865_100180279 Ga0068865_1001802791 389
116 3300009147 Ga0114129_10016489 Ga0114129_100164899 389
117 3300009147 Ga0114129_10025991 Ga0114129_100259913 389
118 3300009147 Ga0114129_10464109 Ga0114129_104641092 389
119 3300009148 Ga0105243_10002534 Ga0105243_100025348 389
120 3300009148 Ga0105243_10131045 Ga0105243_101310452 389
121 3300009176 Ga0105242_10000317 Ga0105242_1000031722 389
122 3300009176 Ga0105242_10013438 Ga0105242_100134385 389
123 3300009545 Ga0105237_10171383 Ga0105237_101713832 389
124 3300010375 Ga0105239_10068386 Ga0105239_100683863 389
125 3300010375 Ga0105239_10129701 Ga0105239_101297013 389
126 3300013297 Ga0157378_10000102 Ga0157378_1000010272 389
127 3300013297 Ga0157378_10124884 Ga0157378_101248842 389
128 3300013306 Ga0163162_10032593 Ga0163162_100325932 389
129 3300013306 Ga0163162_10069594 Ga0163162_100695941 389
130 3300013308 Ga0157375_10008827 Ga0157375_100088273 389
131 3300013308 Ga0157375_10048045 Ga0157375_100480454 389
132 3300014325 Ga0163163_10022824 Ga0163163_100228244 389
133 3300025912 Ga0207707_10000142 Ga0207707_1000014250 389
134 3300025917 Ga0207660_10007845 Ga0207660_100078453 389
135 3300025921 Ga0207652_10000937 Ga0207652_1000093714 389
136 3300025934 Ga0207686_10006996 Ga0207686_100069962 389
137 3300025935 Ga0207709_10001697 Ga0207709_100016978 389
138 3300025935 Ga0207709_10069655 Ga0207709_100696552 389
139 3300025939 Ga0207665_10000001 Ga0207665_10000001102 389
140 3300025942 Ga0207689_10014986 Ga0207689_100149863 389
141 3300025942 Ga0207689_10027800 Ga0207689_100278002 389
142 3300025942 Ga0207689_10148442 Ga0207689_101484421 389
143 3300025961 Ga0207712_10009964 Ga0207712_100099643 389
144 3300026078 Ga0207702_10062679 Ga0207702_100626793 389
145 3300026118 Ga0207675_100002820 Ga0207675_1000028203 389
146 3300038996 Ga0242420_013539 Ga0242420_013539_74_1252 389
147 3300044712 Ga0453684_0111189 Ga0453684_0111189_1825_3000 389
148 3300045051 Ga0451576_0034578 Ga0451576_0034578_2099_3274 389
149 3300048907 Ga0496104_0036691 Ga0496104_0036691_776_1954 389
150 3300048909 Ga0496106_0001126 Ga0496106_0001126_5413_6615 389
151 3300050507 nmdc:mga05p37_223264_c1 nmdc:mga05p37_223264_c1_388_1563 389
152 3300002074 JGI24748J21848_1000012 JGI24748J21848_1000012109 390
153 3300002239 JGI24034J26672_10000003 JGI24034J26672_10000003404 390
154 3300005467 Ga0070706_100213801 Ga0070706_1002138012 390
155 3300005536 Ga0070697_100120571 Ga0070697_1001205712 390
156 3300005842 Ga0068858_100000052 Ga0068858_10000005286 390
157 3300009101 Ga0105247_10000003 Ga0105247_10000003398 390
158 3300009147 Ga0114129_10243431 Ga0114129_102434312 390
159 3300009553 Ga0105249_10000113 Ga0105249_1000011313 390
160 3300013297 Ga0157378_10022039 Ga0157378_100220395 390
161 3300013306 Ga0163162_10000023 Ga0163162_10000023119 390
162 3300014326 Ga0157380_10196656 Ga0157380_101966561 390
163 3300025900 Ga0207710_10000001 Ga0207710_10000001912 390
164 3300025931 Ga0207644_10001982 Ga0207644_100019825 390
165 3300025961 Ga0207712_10001761 Ga0207712_1000176114 390
166 3300026035 Ga0207703_10000406 Ga0207703_1000040620 390
167 3300039437 Ga0436365_0604552 Ga0436365_0604552_682_1857 390
168 3300050507 nmdc:mga05p37_370892_c1 nmdc:mga05p37_370892_c1_120_1319 390

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF07687

M20_dimer

Peptidase dimerisation domain

204

299

0.97

PF04389

Peptidase_M28

Peptidase family M28

89

223

0.88

PF01546

Peptidase_M20

Peptidase family M20/M25/M40

102

399

0.85

Structural Annotation

Top 5 Hits

ID Description Score Start End
1cg2-assembly1.cif.gz_C carboxypeptidase g2 0.8191 13 388
4h2k-assembly2.cif.gz_B crystal structure of the catalytic domain of succinyl-diaminopimelate desuccinylase from haemophilus influenzae 0.8164 21 390
6xj5-assembly4.cif.gz_H carboxypeptidase g2 modified with a versatile bioconjugate for metalloprotein design 0.8138 12 388
6xj5-assembly2.cif.gz_D carboxypeptidase g2 modified with a versatile bioconjugate for metalloprotein design 0.8095 13 388
7m6u-assembly2.cif.gz_B crystal structure of a circular permutation and computationally designed pro-enzyme of carboxypeptidase g2 0.8093 89 388
ID Description Score Start End Superfamily
1cg2A02 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.9199 198 303 3.30.70.360
1cg2D01 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.9016 13 388 3.40.630.10
1cg2A02 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits; 0.881 198 303 3.30.70.360
af_C0P5R8_269_385_3.40.630.10 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.8731 199 285 3.40.630.10
1cg2D01 Alpha Beta;3-Layer(aba) Sandwich;Aminopeptidase;Zn peptidases 0.8645 13 388 3.40.630.10
ID Description Score Start End GO Terms
AF-A0A2S6MU95-F1-model_v4 Glutamate carboxypeptidase 0.9618 21 387 GO:0004180
GO:0046872
AF-A0A5B0BS65-F1-model_v4 M20 family metallopeptidase 0.96 13 390 GO:0016787
GO:0046872
AF-A0A3N5WWY8-F1-model_v4 M20 family peptidase 0.9594 12 390 GO:0016787
GO:0046872
AF-A0A532UKB7-F1-model_v4 Peptidase M20 0.953 13 390 GO:0016787
GO:0046872
AF-A0A2I6QLW1-F1-model_v4 Carboxypeptidase G2 0.9504 10 387 GO:0004180
GO:0046872

Feature Viewer

pLDDT pTM Quality
90.89 0.86 High
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Predicted Structure (AlphaFold2)

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