F251607

General Info

Members Datasets Scaffolds Average Seq Length
167 152 84 285

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|8045830549|8045832054
Length 329
Sequence QAHAPIVEDGTDAAAAVGGGDDARVRGEARDEASGTVVDPIARDAGAPDGLPERRFSAARLFARGRRPSWTLIVAIAVIVIAVLWAVVPWLFTSYDPIVGVPAEKLLPPSTAHWFGTDAIGRDLYARVVYGAIHSLAGALIAVTVGLAAGTVIGVLAGSIGGWLDDVLMRLVDVLLSIPGLLLMLSVIILLGFGTVNAAIAVGVVSIASFARLSRSEVVRVRRTDYVEAAFGSGGTFAAVLGRHVLPNSLTAVVGLAALQFGSAILAISTLGFLGYGAPPPTPEWGLLIAEGRNYVATAWWLTTLPGLVVLVVVLSANRISQSIGRGTR

Samples

Sample ID Description Type Environment
1 2506520008 Serratia plymuthica AS12 Isolate Unclassified
2 2508501050 Microvirga lupini Lut6 Isolate Nodule
3 2510917022 Rhizobium sp. AP16 Isolate Rhizosphere
4 2510917030 Rhizobium sp. CF142 Isolate Rhizosphere
5 2513237144 Rhizobium sullae WSM1592 Isolate Nodule
6 2547132374 Acidovorax radicis N35 Isolate Unclassified
7 2558860100 Sinorhizobium sp. PC2 Isolate Nodule
8 2582581298 Rhizobium alamii YR540 Isolate Rhizosphere
9 2582581316 Agrobacterium rhizogenes OK036 Isolate Rhizosphere
10 2582581866 Rhizobium sp. CF097 Isolate Rhizosphere
11 2585427529 Rhizobium alamii YR584 Isolate Rhizosphere
12 2585427531 Agrobacterium rhizogenes YR530 Isolate Rhizosphere
13 2585427609 Agrobacterium rhizogenes CF263 Isolate Rhizosphere
14 2585428125 Agrobacterium rhizogenes CF262 Isolate Rhizosphere
15 2609459761 Enterobacter sp. NFR05 Isolate Rhizoplane
16 2617270742 Rhizobium miluonense HAMBI 2971 Isolate Nodule
17 2643221557 Ensifer sp. Root558 Isolate Unclassified
18 2643221570 Acidovorax sp. Root568 Isolate Unclassified
19 2643221597 Microbacterium sp. Root180 Isolate Unclassified
20 2643221610 Ensifer sp. Root74 Isolate Unclassified
21 2643221618 Ensifer sp. Root231 Isolate Unclassified
22 2643221626 Ensifer sp. Root31 Isolate Unclassified
23 2643221629 Devosia sp. Root105 Isolate Unclassified
24 2643221655 Ensifer sp. Root1252 Isolate Unclassified
25 2643221659 Ensifer sp. Root127 Isolate Unclassified
26 2643221662 Devosia sp. Root413D1 Isolate Unclassified
27 2643221668 Ensifer sp. Root423 Isolate Unclassified
28 2643221675 Ensifer sp. Root1298 Isolate Unclassified
29 2643221680 Ensifer sp. Root1312 Isolate Unclassified
30 2643221698 Ensifer sp. Root142 Isolate Unclassified
31 2643221712 Ensifer sp. Root258 Isolate Unclassified
32 2643221726 Ensifer sp. Root954 Isolate Unclassified
33 2654587920 Serratia plymuthica HRO-C48 Isolate Rhizosphere
34 2667528174 Rhizobium sp. NFR17 Isolate Rhizoplane
35 2687453601 Serratia plymuthica 3Rp8 Isolate Unclassified
36 2690316117 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
37 2751185821 Ensifer shofinae CCBAU 251167 Isolate Unclassified
38 2773857758 Microbacterium chocolatum 1320 Isolate Unclassified
39 2773857925 Microvirga vignae BR3299 Isolate Unclassified
40 2775507266 Rhizobium tropici PRF 81 Isolate Nodule
41 2806310673 Serratia quinivorans NCTC 13189 Isolate Rhizosphere
42 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
43 2808606372 Agromyces sp. 23-23 Isolate Unclassified
44 2821123053 Rhizobium cellulosilyticum 1193 Isolate Unclassified
45 2821443989 Inquilinus ginsengisoli 584 Isolate Unclassified
46 2838029111 Rhizobium tropici SEMIA 4079 Isolate Nodule
47 2838736955 Rhizobium cellulosilyticum SEMIA 448 Isolate Nodule
48 2841840854 Rhizobium cellulosilyticum SEMIA 444 Isolate Nodule
49 2842140634 Rhizobium cellulosilyticum SEMIA 452 Isolate Nodule
50 2842475841 Rhizobium tropici SEMIA 4059 Isolate Nodule
51 2842482326 Rhizobium lusitanum SEMIA 4060 Isolate Nodule
52 2842502639 Rhizobium tropici SEMIA 4063 Isolate Nodule
53 2844163670 Ensifer sp. 1H6 Isolate Unclassified
54 2844533157 Inquilinus sp. R-72501 v. 2 Isolate Unclassified
55 2847417321 Sinorhizobium fredii CCBAU 45436 Isolate Unclassified
56 2848992105 Sinorhizobium fredii CCBAU 25509 Isolate Unclassified
57 2855872281 Sinorhizobium fredii PCH1 Isolate Nodule
58 2857460504 Brevibacillus sp. R-74223 Isolate Unclassified
59 2857531043 Neorhizobium sp. R-72160 Isolate Unclassified
60 2862993130 Planctomonas deserti 13S1-3 v2 Isolate Rhizosphere
61 2869551831 Serratia inhibens PRI-2C Isolate Rhizosphere
62 2888366609 Serratia sp. NGAS9 Isolate Rhizosphere
63 2904504865 Serratia marcescens 1822 Isolate Unclassified
64 2908669403 Pantoea coffeiphila 1480 Isolate Rhizosphere
65 2908678064 Microbacterium sp. 1518 Isolate Rhizosphere
66 2919069694 Microbacterium sp. 1154 Isolate Unclassified
67 2919408235 Rhizobium miluonense 3199 Isolate Unclassified
68 2929138655 Agrobacterium sp. R-72433 Hybrid assembly Isolate Unclassified
69 2941479691
70 2941499720 Ensifer sp. 4252 Isolate Rhizosphere
71 2945874760 Phytobacter diazotrophicus UAEU22 Isolate Rhizosphere
72 2964326757 Planctomonas psychrotolerans J5903 Isolate Rhizosphere
73 2974294766 Microbacterium proteolyticum SORGH_AS 209 Isolate Unclassified
74 2974324384 Microbacterium sp. SORGH_AS 344 Isolate Unclassified
75 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere
76 3300002987 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB Metagenome Endosphere
77 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
78 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
79 3300003374 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF Metagenome Endosphere
80 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
81 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
82 3300004625 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMF_r2 Metagenome Endosphere
83 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
84 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
85 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
86 3300006042 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 Metagenome Endosphere
87 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
88 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
89 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
90 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
91 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
92 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
93 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
94 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
95 3300013249 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.3_F06 Metagenome Rhizosphere
96 3300013250 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_C05 Metagenome Rhizosphere
97 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
98 3300015688 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_G01 Metagenome Rhizosphere
99 3300015690 Rizhosphere microbial communities from mature sugarcane plants Campinas, Sao Paulo, Brazil - 001.1_D05 Metagenome Rhizosphere
100 3300021320 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 Metagenome Nodule
101 3300021321 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1 Metagenome Nodule
102 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
103 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
104 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
105 3300025263 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mTSA_r2 (SPAdes) (version 3) Metagenome Endosphere
106 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
107 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
108 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
109 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
110 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
111 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
112 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
113 3300025303 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
114 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
115 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
116 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
117 3300027866 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 (SPAdes) (version 2) Metagenome Endosphere
118 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
119 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
120 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
121 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
122 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
123 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
124 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
125 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
126 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
127 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
128 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
129 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
130 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
131 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
132 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
133 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
134 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
135 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
136 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
137 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
138 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
139 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
140 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
141 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
142 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
143 3300050495 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-3 re-annotation Metagenome Endosphere
144 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
145 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
146 640753048 Serratia proteamaculans 568 Isolate Endosphere
147 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
148 8005484373 Rhizobium tropici SARCC-755 Isolate Nodule
149 8005682033 Rhizobium dioscoreae S-93 Isolate Unclassified
150 8024486573 Rhizobium tubonense CCBAU 85046 Isolate Nodule
151 8045830549 Microbacterium yannicii DSM 23203 Isolate Unclassified
152 8055037949 Leucobacter rhizosphaerae H25R-14 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 50.3
Metatranscriptomes 0
Isolates 49.7

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 17.96
Nodule 10.78
Rhizoplane 2.4
Rhizosphere 31.74
Stem 0
Stem Tuber 0
Unclassified 37.13

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25159J45721_1002618 3300002987 Bacteria 6731
2 rootH1_10017163 3300003323 Bacteria 5386
3 JGI25160J50197_1000309 3300003354 Bacteria 34617
4 JGI25161J50226_1001120 3300003374 Bacteria 8993
5 Ga0055532_1003130 3300003758 Bacteria 2997
6 Ga0055524_1001305 3300003775 Bacteria 14590
7 Ga0055524_1011244 3300003775 Bacteria 3514
8 Ga0055543_1000290 3300004625 Bacteria 36316
9 Ga0065165_1000090 3300005262 Bacteria 150368
10 Ga0070668_100027343 3300005347 Bacteria 4331
11 Ga0068870_10061598 3300005840 Bacteria 2018
12 Ga0075368_10012077 3300006042 Bacteria 3153
13 Ga0075367_10010811 3300006178 Bacteria 4808
14 Ga0075370_10020880 3300006353 Bacteria 3585
15 Ga0105251_10000980 3300009011 Bacteria 25171
16 Ga0105244_10003146 3300009036 Bacteria 12012
17 Ga0105244_10040783 3300009036 Bacteria 2408
18 Ga0105244_10107057 3300009036 Bacteria 1363
19 Ga0105243_10044537 3300009148 Bacteria 3482
20 Ga0105249_10081443 3300009553 Bacteria 3009
21 Ga0157373_10001413 3300013100 Bacteria 18327
22 Ga0157370_10224201 3300013104 Bacteria 1740
23 Ga0171463_1009 3300013249 Bacteria 288284
24 Ga0171462_1001 3300013250 Bacteria 1135406
25 Ga0157380_10013116 3300014326 Bacteria 6032
26 Ga0183367_1004 3300015688 Bacteria 716880
27 Ga0183363_1294 3300015690 Bacteria 7140
28 Ga0214544_1000123 3300021320 Bacteria 110258
29 Ga0214542_1000141 3300021321 Bacteria 104386
30 Ga0214543_1000026 3300021327 Bacteria 220652
31 Ga0209436_103298 3300025208 Bacteria 4356
32 Ga0209147_100042 3300025229 Bacteria 301263
33 Ga0209565_1013726 3300025263 Bacteria 1888
34 Ga0209130_1000079 3300025284 Bacteria 167669
35 Ga0209676_1011912 3300025292 Bacteria 3462
36 Ga0209025_1000177 3300025294 Bacteria 158173
37 Ga0209564_1000132 3300025295 Bacteria 191966
38 Ga0209050_1015404 3300025298 Bacteria 3213
39 Ga0209256_1000122 3300025299 Bacteria 166746
40 Ga0209256_1000721 3300025299 Bacteria 43764
41 Ga0207426_1000167 3300025302 Bacteria 167669
42 Ga0209051_1018128 3300025303 Bacteria 3124
43 Ga0209257_1025575 3300025304 Bacteria 2013
44 Ga0207655_1000041 3300025728 Bacteria 333962
45 Ga0207713_1002237 3300025735 Bacteria 14326
46 Ga0209813_10009930 3300027866 Bacteria 2449
47 Ga0307515_10042031 3300028794 Bacteria 7168
48 Ga0307411_10041737 3300032005 Bacteria 2922
49 Ga0451853_0934668 3300041512 Bacteria 2005
50 Ga0439449_0007646 3300042007 Bacteria 4107
51 Ga0466963_0104319 3300044694 Bacteria 1942
52 Ga0466968_0034500 3300044735 Bacteria 2111
53 Ga0466970_0000164 3300044765 Bacteria 31664
54 Ga0466970_0049100 3300044765 Bacteria 2251
55 Ga0466958_0018028 3300045836 Bacteria 4092
56 Ga0466967_0009889 3300045976 Bacteria 7115
57 Ga0495633_0000305 3300046558 Bacteria 55923
58 Ga0495625_0051834 3300046660 Bacteria 2940
59 Ga0495686_0035322 3300047472 Bacteria 3214
60 Ga0496108_0000245 3300048911 Bacteria 48363
61 Ga0496110_0190149 3300048913 Bacteria 1864
62 Ga0496119_0000273 3300048922 Bacteria 73280
63 Ga0496119_0010845 3300048922 Bacteria 7621
64 Ga0496119_0012347 3300048922 Bacteria 6946
65 Ga0496120_0000515 3300048923 Bacteria 60153
66 Ga0496120_0020340 3300048923 Bacteria 4220
67 Ga0496121_0000159 3300048924 Bacteria 147049
68 Ga0496121_0000337 3300048924 Bacteria 97711
69 Ga0496121_0056710 3300048924 Bacteria 3251
70 Ga0496122_0070277 3300048925 Bacteria 2503
71 Ga0496123_0015625 3300048926 Bacteria 6214
72 Ga0496124_0050265 3300048927 Bacteria 3553
73 Ga0496124_0214694 3300048927 Bacteria 1452
74 Ga0496124_0255555 3300048927 Bacteria 1293
75 Ga0496125_0000005 3300048928 Bacteria 827598
76 Ga0496125_0156595 3300048928 Bacteria 1555
77 Ga0496126_0374771 3300048929 Bacteria 1160
78 Ga0501043_0147754 3300049579 Bacteria 1840
79 Ga0501070_0000539 3300049586 Bacteria 34704
80 nmdc:mga06z11_1355_c1 3300050494 Bacteria 9067
81 nmdc:mga04h51_950_c1 3300050495 Bacteria 6689
82 Ga0500618_000405 3300053125 Bacteria 29227
83 Ga0500618_002708 3300053125 Bacteria 6470
84 Ga0466962_0087805 3300061719 Bacteria 1489

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300009036 Ga0105244_10107057 Ga0105244_101070572 217
2 3300009148 Ga0105243_10044537 Ga0105243_100445372 217
3 3300009553 Ga0105249_10081443 Ga0105249_100814432 217
4 3300014326 Ga0157380_10013116 Ga0157380_100131165 217
5 3300048927 Ga0496124_0255555 Ga0496124_0255555_221_1174 230
6 3300049586 Ga0501070_0000539 Ga0501070_0000539_9772_10725 230
7 3300048922 Ga0496119_0012347 Ga0496119_0012347_4859_5803 236
8 3300049579 Ga0501043_0147754 Ga0501043_0147754_362_1363 238
9 3300006042 Ga0075368_10012077 Ga0075368_100120772 240
10 3300006178 Ga0075367_10010811 Ga0075367_100108115 240
11 3300027866 Ga0209813_10009930 Ga0209813_100099302 240
12 3300050494 nmdc:mga06z11_1355_c1 nmdc:mga06z11_1355_c1_7538_8461 240
13 3300050495 nmdc:mga04h51_950_c1 nmdc:mga04h51_950_c1_1712_2635 240
14 3300005347 Ga0070668_100027343 Ga0070668_1000273432 241
15 3300005840 Ga0068870_10061598 Ga0068870_100615982 241
16 3300021320 Ga0214544_1000123 Ga0214544_100012346 241
17 3300021321 Ga0214542_1000141 Ga0214542_100014152 241
18 3300021327 Ga0214543_1000026 Ga0214543_1000026152 241
19 iso_pu_bacteria 2904504865 2904508874 241
20 3300041512 Ga0451853_0934668 Ga0451853_0934668_898_1839 243
21 3300044735 Ga0466968_0034500 Ga0466968_0034500_157_1113 245
22 3300044765 Ga0466970_0049100 Ga0466970_0049100_80_1036 245
23 3300053125 Ga0500618_000405 Ga0500618_000405_3095_4006 245
24 3300013250 Ga0171462_1001 Ga0171462_1001980 246
25 3300042007 Ga0439449_0007646 Ga0439449_0007646_1334_2257 246
26 3300048922 Ga0496119_0000273 Ga0496119_0000273_47207_48097 246
27 3300048923 Ga0496120_0000515 Ga0496120_0000515_42611_43501 246
28 3300003323 rootH1_10017163 rootH1_100171632 247
29 3300009011 Ga0105251_10000980 Ga0105251_1000098016 247
30 3300009036 Ga0105244_10003146 Ga0105244_100031469 247
31 3300013100 Ga0157373_10001413 Ga0157373_100014137 247
32 3300025728 Ga0207655_1000041 Ga0207655_1000041286 247
33 3300025735 Ga0207713_1002237 Ga0207713_10022371 247
34 iso_pu_bacteria 2844533157 2844536917 247
35 iso_pu_bacteria 2908669403 2908673738 248
36 3300009036 Ga0105244_10040783 Ga0105244_100407832 249
37 iso_pu_bacteria 2609459761 2609910724 249
38 iso_pu_bacteria 2945874760 2945878656 249
39 3300028794 Ga0307515_10042031 Ga0307515_100420312 250
40 3300046660 Ga0495625_0051834 Ga0495625_0051834_1175_2080 250
41 3300053125 Ga0500618_002708 Ga0500618_002708_4815_5732 251
42 iso_pu_bacteria 2929138655 2929142550 251
43 3300003758 Ga0055532_1003130 Ga0055532_10031303 252
44 3300025229 Ga0209147_100042 Ga0209147_10004221 252
45 3300044694 Ga0466963_0104319 Ga0466963_0104319_550_1470 252
46 3300044765 Ga0466970_0000164 Ga0466970_0000164_11988_12908 252
47 3300045836 Ga0466958_0018028 Ga0466958_0018028_2446_3366 252
48 3300045976 Ga0466967_0009889 Ga0466967_0009889_4518_5438 252
49 3300061719 Ga0466962_0087805 Ga0466962_0087805_466_1386 252
50 iso_pu_bacteria 2773857758 2774379552 252
51 iso_pu_bacteria 2857460504 2857465297 252
52 iso_pu_bacteria 2908678064 2908679427 252
53 iso_pu_bacteria 2919069694 2919070064 252
54 3300006353 Ga0075370_10020880 Ga0075370_100208802 253
55 3300015688 Ga0183367_1004 Ga0183367_1004267 253
56 3300048924 Ga0496121_0000337 Ga0496121_0000337_57760_58650 253
57 3300048929 Ga0496126_0374771 Ga0496126_0374771_225_1097 253
58 3300048928 Ga0496125_0156595 Ga0496125_0156595_83_952 254
59 iso_pu_bacteria 2941479691 2941481572 254
60 iso_pu_bacteria 2995726249 2995726775 254
61 3300047472 Ga0495686_0035322 Ga0495686_0035322_83_997 255
62 iso_pu_bacteria 2582581866 2585397209 255
63 iso_pu_bacteria 2643221629 2644168124 256
64 iso_pu_bacteria 2643221662 2644348820 256
65 iso_pu_bacteria 2974294766 2974295704 256
66 iso_pu_bacteria 2974324384 2974324497 256
67 3300048911 Ga0496108_0000245 Ga0496108_0000245_30864_31778 257
68 3300048913 Ga0496110_0190149 Ga0496110_0190149_51_965 257
69 iso_pu_bacteria 2904504865 2904507873 257
70 3300048922 Ga0496119_0010845 Ga0496119_0010845_4379_5248 258
71 3300048923 Ga0496120_0020340 Ga0496120_0020340_2163_3032 258
72 3300048924 Ga0496121_0000159 Ga0496121_0000159_92343_93212 258
73 3300048925 Ga0496122_0070277 Ga0496122_0070277_307_1176 258
74 3300048926 Ga0496123_0015625 Ga0496123_0015625_2556_3425 258
75 3300048927 Ga0496124_0050265 Ga0496124_0050265_1683_2552 258
76 3300048928 Ga0496125_0000005 Ga0496125_0000005_661387_662256 258
77 3300046558 Ga0495633_0000305 Ga0495633_0000305_26525_27445 259
78 3300032005 Ga0307411_10041737 Ga0307411_100417372 260
79 iso_pu_bacteria 2558860100 2558867195 260
80 iso_pu_bacteria 2643221557 2643805019 260
81 iso_pu_bacteria 2643221610 2644068365 260
82 iso_pu_bacteria 2643221668 2644379050 260
83 iso_pu_bacteria 2643221675 2644419291 260
84 iso_pu_bacteria 2643221680 2644452648 260
85 iso_pu_bacteria 2643221726 2644691422 260
86 iso_pu_bacteria 2808606368 2808884506 260
87 iso_pu_bacteria 2821123053 2821126784 260
88 iso_pu_bacteria 2838736955 2838740391 260
89 iso_pu_bacteria 2841840854 2841843485 260
90 iso_pu_bacteria 2842140634 2842143205 260
91 iso_pu_bacteria 2857531043 2857535432 260
92 3300013104 Ga0157370_10224201 Ga0157370_102242012 261
93 3300048924 Ga0496121_0056710 Ga0496121_0056710_714_1616 261
94 3300048927 Ga0496124_0214694 Ga0496124_0214694_518_1420 261
95 iso_pu_bacteria 2506520008 2506584493 261
96 iso_pu_bacteria 2643221618 2644104630 261
97 iso_pu_bacteria 2643221626 2644146276 261
98 iso_pu_bacteria 2643221655 2644308018 261
99 iso_pu_bacteria 2643221659 2644333233 261
100 iso_pu_bacteria 2643221698 2644542010 261
101 iso_pu_bacteria 2643221712 2644614172 261
102 iso_pu_bacteria 2654587920 2656275681 261
103 iso_pu_bacteria 2687453601 2689445899 261
104 iso_pu_bacteria 2690316117 2692318870 261
105 iso_pu_bacteria 2751185821 2753461771 261
106 iso_pu_bacteria 2806310673 2807176746 261
107 iso_pu_bacteria 2821443989 2821445508 261
108 iso_pu_bacteria 2844163670 2844164910 261
109 iso_pu_bacteria 2847417321 2847422624 261
110 iso_pu_bacteria 2848992105 2848997973 261
111 iso_pu_bacteria 2855872281 2855873905 261
112 iso_pu_bacteria 2862993130 2862993339 261
113 iso_pu_bacteria 2869551831 2869555269 261
114 iso_pu_bacteria 2888366609 2888369890 261
115 iso_pu_bacteria 2941499720 2941503834 261
116 iso_pu_bacteria 2964326757 2964327270 261
117 iso_pu_bacteria 640753048 640938698 261
118 iso_pu_bacteria 8004212874 8004213730 261
119 iso_pu_bacteria 8024486573 8024490412 261
120 iso_pu_bacteria 8055037949 8055039523 261
121 3300003775 Ga0055524_1001305 Ga0055524_100130513 262
122 3300025299 Ga0209256_1000122 Ga0209256_100012299 262
123 iso_pu_bacteria 2508501050 2508728764 262
124 iso_pu_bacteria 2773857925 2774868683 262
125 iso_pu_bacteria 2510917022 2511132253 264
126 iso_pu_bacteria 2582581316 2585334568 264
127 iso_pu_bacteria 2585427531 2585560985 264
128 iso_pu_bacteria 2585427609 2585908426 264
129 iso_pu_bacteria 2585428125 2587983538 264
130 iso_pu_bacteria 2617270742 2617382137 264
131 iso_pu_bacteria 2775507266 2778173519 264
132 iso_pu_bacteria 2808606372 2808899318 264
133 iso_pu_bacteria 2842482326 2842484342 264
134 3300002987 JGI25159J45721_1002618 JGI25159J45721_10026182 265
135 3300003354 JGI25160J50197_1000309 JGI25160J50197_100030927 265
136 3300003374 JGI25161J50226_1001120 JGI25161J50226_10011206 265
137 3300003775 Ga0055524_1011244 Ga0055524_10112442 265
138 3300004625 Ga0055543_1000290 Ga0055543_100029019 265
139 3300005262 Ga0065165_1000090 Ga0065165_100009027 265
140 3300013249 Ga0171463_1009 Ga0171463_1009101 265
141 3300015690 Ga0183363_1294 Ga0183363_12943 265
142 3300025208 Ga0209436_103298 Ga0209436_1032983 265
143 3300025263 Ga0209565_1013726 Ga0209565_10137262 265
144 3300025284 Ga0209130_1000079 Ga0209130_100007927 265
145 3300025292 Ga0209676_1011912 Ga0209676_10119122 265
146 3300025294 Ga0209025_1000177 Ga0209025_100017745 265
147 3300025295 Ga0209564_1000132 Ga0209564_100013298 265
148 3300025298 Ga0209050_1015404 Ga0209050_10154043 265
149 3300025299 Ga0209256_1000721 Ga0209256_100072132 265
150 3300025302 Ga0207426_1000167 Ga0207426_1000167100 265
151 3300025303 Ga0209051_1018128 Ga0209051_10181282 265
152 3300025304 Ga0209257_1025575 Ga0209257_10255752 265
153 iso_pu_bacteria 2510917030 2511194684 265
154 iso_pu_bacteria 2513237144 2513912067 265
155 iso_pu_bacteria 2547132374 2548500576 265
156 iso_pu_bacteria 2582581298 2585222116 265
157 iso_pu_bacteria 2585427529 2585544931 265
158 iso_pu_bacteria 2643221570 2643864424 265
159 iso_pu_bacteria 2643221597 2643994682 265
160 iso_pu_bacteria 2667528174 2671114356 265
161 iso_pu_bacteria 2838029111 2838030536 265
162 iso_pu_bacteria 2842475841 2842477183 265
163 iso_pu_bacteria 2842502639 2842503980 265
164 iso_pu_bacteria 2919408235 2919412315 265
165 iso_pu_bacteria 8005484373 8005487082 265
166 iso_pu_bacteria 8005682033 8005686204 265
167 iso_pu_bacteria 8045830549 8045832054 265

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00528

BPD_transp_1

Binding-protein-dependent transport system inner membrane component

150

329

0.95

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pLDDT pTM Quality
65.72 0.38 Low
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Predicted Structure (AlphaFold2)

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