F251561

General Info

Members Datasets Scaffolds Average Seq Length
167 123 334 531

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2870782633|2870784502
Length 582
Sequence ELVGRTLARLGAGPVFGVVGSGNLRVTNALRAHGVRFVATRHEAGAATMADACARMSGRVAVATTHQGCGLSNAVTGIGEAAKSRTPMLVLAADTAGSAVLSNFRIDQDALVRAVGAVPERVHSADTAVADTVRAYRTALQQRRTVVLNLPLDVQELDAPETDAPETDLPGADLPGADRLGADPPGVAPVVVAPASPIRPDPDAVTALAGMLARARRPVFVAGRGAREAAAPLRALAESTGALLATSAVAHGLFHDEPWSLGISGGFATPLAAELISDADLVVGWGCALNMWTMRHGRLINPAATVVQVDVEQAALGAHRPVHLGVLGDAGQTAADALAALRGHQGDAAGRAGAGEEGVAGEHRATGYRTPEIAGRIAAEGRWNQVAHTDLSTETAIDPRTLTARLDELLPADRLVAVDSGNFMGYPSAYLGVPDEFGFCFTQAFQSVGLGLATAIGAAVARPDRLTVAALGDGGFHMGVAELDTAVRLRLPMVVVVYNDAAYGAEVHHFVEDDLGTVKFPDTDIASVGRGFGCAGLTVRTLADLEEVGDWLAGPRDKPLVIDAKIADDGGSWWLAEAFRGH

Samples

Sample ID Description Type Environment
1 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
4 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
7 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
8 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
9 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
10 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
11 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
12 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
13 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
14 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
15 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
16 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
17 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
18 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
19 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
20 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
21 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
22 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
23 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
24 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
25 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
26 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
27 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
29 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
31 3300009979 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG Metagenome Rhizosphere
32 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
33 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
34 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
35 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
36 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
37 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
38 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
39 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
40 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
57 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
59 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
60 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
61 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
62 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
63 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
64 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
65 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
66 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
67 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
68 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
69 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
70 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
71 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
72 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
73 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
74 3300047447 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 rhizosphere Metagenome Rhizosphere
75 3300048904 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled Metagenome Rhizoplane
76 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
77 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
78 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
79 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
80 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
81 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
82 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
83 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
84 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
85 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
86 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
88 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
89 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
90 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
94 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
95 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
96 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
97 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
98 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
99 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
100 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
101 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
102 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
103 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
104 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
105 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
106 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
107 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
108 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
109 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
110 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
111 2870782633 Pseudonocardia eucalypti DSM 45351 Isolate Unclassified
112 2523231044 Gordonia rhizosphera NBRC 16068 Isolate Rhizosphere
113 2558860112 Pseudonocardia acaciae DSM 45401 Isolate Unclassified
114 2675903059 Asanoa hainanensis CGMCC 4.5593 Isolate Rhizosphere
115 2791354901 Actinophytocola xanthii 11-183 Isolate Rhizosphere
116 2816332139 Pseudonocardia kunmingensis DSM 45301 Isolate Unclassified
117 2837268691 Jiangella endophytica KE2-3 Isolate Rhizosphere
118 2862574272 Streptomyces sp. AcE210 Isolate Nodule
119 2895427314 Nonomuraea sp. PA05 Isolate Unclassified
120 2899370129 Amycolatopsis alkalitolerans SYSUP0005 Isolate Stem Tuber
121 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
122 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root
123 2995726249 Leucobacter zeae CC-MF41 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.22
Metatranscriptomes 0
Isolates 7.78

Biome Distribution

Category Percentage (%)
Aerial Root 1.2
Bulb 0
Endosphere 0
Nodule 0.6
Rhizoplane 8.98
Rhizosphere 80.84
Stem 0
Stem Tuber 0.6
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070658_10058016 3300005327 Bacteria 3150
2 Ga0070683_100002149 3300005329 Bacteria 15577
3 Ga0070682_100018054 3300005337 Bacteria 4118
4 Ga0070682_100082196 3300005337 Bacteria 2087
5 Ga0068868_100095202 3300005338 Bacteria 2403
6 Ga0070660_100032309 3300005339 Bacteria 3938
7 Ga0070687_100036635 3300005343 Bacteria 2446
8 Ga0070668_100023510 3300005347 Bacteria 4662
9 Ga0070714_100001361 3300005435 Bacteria 17691
10 Ga0070708_100005291 3300005445 Bacteria 10223
11 Ga0070708_100056464 3300005445 Bacteria 3493
12 Ga0070662_100081868 3300005457 Bacteria 2405
13 Ga0070685_10004193 3300005466 Bacteria 7274
14 Ga0070706_100010978 3300005467 Bacteria 8410
15 Ga0070706_100043312 3300005467 Bacteria 4159
16 Ga0070706_100063278 3300005467 Bacteria 3419
17 Ga0070706_100146327 3300005467 Bacteria 2206
18 Ga0070707_100003555 3300005468 Bacteria 14713
19 Ga0070707_100030169 3300005468 Bacteria 5160
20 Ga0070698_100070331 3300005471 Bacteria 3512
21 Ga0070698_100130436 3300005471 Bacteria 2469
22 Ga0070697_100033276 3300005536 Bacteria 4151
23 Ga0068853_100017855 3300005539 Bacteria 5861
24 Ga0070664_100186459 3300005564 Bacteria 1846
25 Ga0068852_100093646 3300005616 Bacteria 2693
26 Ga0068864_100072971 3300005618 Bacteria 2992
27 Ga0081455_10000611 3300005937 Bacteria 46255
28 Ga0081539_10000195 3300005985 Bacteria 141188
29 Ga0081539_10005012 3300005985 Bacteria 13974
30 Ga0070716_100067588 3300006173 Bacteria 2088
31 Ga0075428_100000723 3300006844 Bacteria 34246
32 Ga0075428_100011466 3300006844 Bacteria 9860
33 Ga0075430_100000406 3300006846 Bacteria 31962
34 Ga0075430_100030375 3300006846 Bacteria 4589
35 Ga0075431_100001376 3300006847 Bacteria 22327
36 Ga0075431_100003036 3300006847 Bacteria 16235
37 Ga0075431_100024612 3300006847 Bacteria 6171
38 Ga0075433_10133269 3300006852 Bacteria 2208
39 Ga0111539_10083613 3300009094 Bacteria 3753
40 Ga0105245_10006899 3300009098 Bacteria 9956
41 Ga0114129_10008342 3300009147 Bacteria 14777
42 Ga0114129_10211363 3300009147 Bacteria 2622
43 Ga0105237_10154559 3300009545 Bacteria 2291
44 Ga0105032_101205 3300009979 Bacteria 2389
45 Ga0105246_10013692 3300011119 Bacteria 5089
46 Ga0105246_10056542 3300011119 Bacteria 2712
47 Ga0157371_10073804 3300013102 Bacteria 2416
48 Ga0157374_10100884 3300013296 Bacteria 2767
49 Ga0163162_10075019 3300013306 Bacteria 3442
50 Ga0157372_10029816 3300013307 Bacteria 5962
51 Ga0157375_10075419 3300013308 Bacteria 3397
52 Ga0157380_10093394 3300014326 Bacteria 2488
53 Ga0213876_10010181 3300021384 Bacteria 5051
54 Ga0213876_10064009 3300021384 Bacteria 1941
55 Ga0207688_10035040 3300025901 Bacteria 2780
56 Ga0207643_10015676 3300025908 Bacteria 4127
57 Ga0207705_10119471 3300025909 Bacteria 1954
58 Ga0207684_10004337 3300025910 Bacteria 13414
59 Ga0207684_10024430 3300025910 Bacteria 5152
60 Ga0207684_10048948 3300025910 Bacteria 3586
61 Ga0207646_10011424 3300025922 Bacteria 8606
62 Ga0207646_10060950 3300025922 Bacteria 3368
63 Ga0207694_10152183 3300025924 Bacteria 1864
64 Ga0207664_10007806 3300025929 Bacteria 7431
65 Ga0207704_10014702 3300025938 Bacteria 3962
66 Ga0207691_10086888 3300025940 Bacteria 2806
67 Ga0207689_10016587 3300025942 Bacteria 6232
68 Ga0207661_10012573 3300025944 Bacteria 6156
69 Ga0207640_10022582 3300025981 Bacteria 3768
70 Ga0207678_10107860 3300026067 Bacteria 2375
71 Ga0207708_10010183 3300026075 Bacteria 6980
72 Ga0207675_100094103 3300026118 Bacteria 2819
73 Ga0207683_10044618 3300026121 Bacteria 3876
74 Ga0207428_10006239 3300027907 Bacteria 11015
75 Ga0268266_10025342 3300028379 Bacteria 5044
76 Ga0307512_10011111 3300030522 Bacteria 8545
77 Ga0307513_10008541 3300031456 Bacteria 13090
78 Ga0307513_10186601 3300031456 Bacteria 1930
79 Ga0307507_10007675 3300033179 Bacteria 15458
80 Ga0373925_0078011 3300037068 Bacteria 2515
81 Ga0395898_0034375 3300037466 Bacteria 5053
82 Ga0436364_0560677 3300037853 Bacteria 25296
83 Ga0395901_0108078 3300038443 Bacteria 2920
84 Ga0436365_1351534 3300039437 Bacteria 9099
85 Ga0436365_1513564 3300039437 Bacteria 14515
86 Ga0466965_0032915 3300044683 Bacteria 2533
87 Ga0466967_0018784 3300045976 Bacteria 5538
88 Ga0466967_0147955 3300045976 Bacteria 2192
89 Ga0495603_0008726 3300046455 Bacteria 6128
90 Ga0495588_0016676 3300046674 Bacteria 3553
91 Ga0495589_0014424 3300046794 Bacteria 4069
92 Ga0495636_0003068 3300047318 Bacteria 6479
93 Ga0495676_0029504 3300047321 Bacteria 4668
94 Ga0495687_013740 3300047443 Bacteria 4204
95 Ga0495685_013871 3300047447 Bacteria 2734
96 Ga0496101_0086072 3300048904 Bacteria 2330
97 Ga0496102_0030633 3300048905 Bacteria 4816
98 Ga0496102_0091243 3300048905 Bacteria 2820
99 Ga0496102_0106173 3300048905 Bacteria 2613
100 Ga0496105_0052974 3300048908 Bacteria 3351
101 Ga0496106_0021446 3300048909 Bacteria 4796
102 Ga0496106_0182920 3300048909 Bacteria 1664
103 Ga0496107_0010641 3300048910 Bacteria 6396
104 Ga0496109_0053011 3300048912 Bacteria 3699
105 Ga0496109_0057330 3300048912 Bacteria 3555
106 Ga0496109_0167539 3300048912 Bacteria 2060
107 Ga0496110_0022107 3300048913 Bacteria 5395
108 Ga0496113_0011500 3300048916 Bacteria 5909
109 Ga0496114_0058293 3300048917 Bacteria 3224
110 Ga0496115_0024360 3300048918 Bacteria 4702
111 Ga0501036_0010432 3300049572 Bacteria 7671
112 Ga0501036_0020081 3300049572 Bacteria 5610
113 Ga0501036_0133437 3300049572 Bacteria 2096
114 Ga0501037_0017272 3300049573 Bacteria 5313
115 Ga0501038_0015193 3300049574 Bacteria 7002
116 Ga0501039_0002625 3300049575 Bacteria 13419
117 Ga0501039_0064248 3300049575 Bacteria 2845
118 Ga0501040_0001116 3300049576 Bacteria 17001
119 Ga0501041_0003951 3300049577 Bacteria 8551
120 Ga0501042_0017310 3300049578 Bacteria 4968
121 Ga0501042_0032401 3300049578 Bacteria 3701
122 Ga0501046_0026680 3300049580 Bacteria 4718
123 Ga0501047_0019262 3300049581 Bacteria 6547
124 Ga0501048_0003295 3300049582 Bacteria 12302
125 Ga0501071_0000178 3300049587 Bacteria 28056
126 Ga0501072_0012025 3300049588 Bacteria 6612
127 Ga0501072_0026386 3300049588 Bacteria 4530
128 Ga0501074_0010767 3300049590 Bacteria 6642
129 Ga0501075_0002164 3300049591 Bacteria 13012
130 Ga0501076_0001841 3300049592 Bacteria 14423
131 Ga0501076_0025059 3300049592 Bacteria 4614
132 Ga0501079_0007848 3300049741 Bacteria 8081
133 Ga0501079_0055842 3300049741 Bacteria 3047
134 Ga0501080_0025097 3300049742 Bacteria 5531
135 Ga0501081_0020507 3300049743 Bacteria 4404
136 Ga0501045_0037531 3300049824 Bacteria 3522
137 nmdc:mga05p37_304_c1 3300050507 Bacteria 51652
138 nmdc:mga05p37_807_c1 3300050507 Bacteria 35021
139 nmdc:mga09592_2175_c1 3300050508 Bacteria 15807
140 nmdc:mga09592_3328_c1 3300050508 Bacteria 13001
141 nmdc:mga0qj67_29945_c1 3300050509 Bacteria 4232
142 nmdc:mga0qj67_3591_c1 3300050509 Bacteria 11193
143 nmdc:mga0qj67_5313_c1 3300050509 Bacteria 9400
144 nmdc:mga0qj67_5984_c1 3300050509 Bacteria 8912
145 nmdc:mga06r32_118605_c1 3300050510 Bacteria 2609
146 nmdc:mga06r32_17064_c1 3300050510 Bacteria 6626
147 nmdc:mga06r32_43499_c1 3300050510 Bacteria 4274
148 nmdc:mga06r32_83_c1 3300050510 Bacteria 64174
149 nmdc:mga08y16_10912_c1 3300050511 Bacteria 9542
150 nmdc:mga08y16_122067_c1 3300050511 Bacteria 2711
151 nmdc:mga08y16_39126_c1 3300050511 Bacteria 4976
152 nmdc:mga0a205_121724_c1 3300050515 Bacteria 2508
153 nmdc:mga0a205_85802_c1 3300050515 Bacteria 3040
154 Ga0501084_0011157 3300054114 Bacteria 7443
155 2870784502 2870782633 Bacteria 9624083
156 2523385341 2523231044 Bacteria 6434991
157 2558911268 2558860112 Bacteria 9931328
158 2676485234 2675903059 Bacteria 8644972
159 2791912386 2791354901 Bacteria 8322202
160 2816508567 2816332139 Bacteria 9138787
161 2837272920 2837268691 Bacteria 7850704
162 2862581739 2862574272 Bacteria 10567477
163 2895439554 2895427314 Bacteria 13147766
164 2899370640 2899370129 Bacteria 6781179
165 2984580485 2984576629 Bacteria 4248407
166 2990258177 2990256926 Bacteria 4252839
167 2995726441 2995726249 Bacteria 3470435
168 Ga0070658_10058016
169 Ga0070683_100002149
170 Ga0070682_100018054
171 Ga0070682_100082196
172 Ga0068868_100095202
173 Ga0070660_100032309
174 Ga0070687_100036635
175 Ga0070668_100023510
176 Ga0070714_100001361
177 Ga0070708_100005291
178 Ga0070708_100056464
179 Ga0070662_100081868
180 Ga0070685_10004193
181 Ga0070706_100010978
182 Ga0070706_100043312
183 Ga0070706_100063278
184 Ga0070706_100146327
185 Ga0070707_100003555
186 Ga0070707_100030169
187 Ga0070698_100070331
188 Ga0070698_100130436
189 Ga0070697_100033276
190 Ga0068853_100017855
191 Ga0070664_100186459
192 Ga0068852_100093646
193 Ga0068864_100072971
194 Ga0081455_10000611
195 Ga0081539_10000195
196 Ga0081539_10005012
197 Ga0070716_100067588
198 Ga0075428_100000723
199 Ga0075428_100011466
200 Ga0075430_100000406
201 Ga0075430_100030375
202 Ga0075431_100001376
203 Ga0075431_100003036
204 Ga0075431_100024612
205 Ga0075433_10133269
206 Ga0111539_10083613
207 Ga0105245_10006899
208 Ga0114129_10008342
209 Ga0114129_10211363
210 Ga0105237_10154559
211 Ga0105032_101205
212 Ga0105246_10013692
213 Ga0105246_10056542
214 Ga0157371_10073804
215 Ga0157374_10100884
216 Ga0163162_10075019
217 Ga0157372_10029816
218 Ga0157375_10075419
219 Ga0157380_10093394
220 Ga0213876_10010181
221 Ga0213876_10064009
222 Ga0207688_10035040
223 Ga0207643_10015676
224 Ga0207705_10119471
225 Ga0207684_10004337
226 Ga0207684_10024430
227 Ga0207684_10048948
228 Ga0207646_10011424
229 Ga0207646_10060950
230 Ga0207694_10152183
231 Ga0207664_10007806
232 Ga0207704_10014702
233 Ga0207691_10086888
234 Ga0207689_10016587
235 Ga0207661_10012573
236 Ga0207640_10022582
237 Ga0207678_10107860
238 Ga0207708_10010183
239 Ga0207675_100094103
240 Ga0207683_10044618
241 Ga0207428_10006239
242 Ga0268266_10025342
243 Ga0307512_10011111
244 Ga0307513_10008541
245 Ga0307513_10186601
246 Ga0307507_10007675
247 Ga0373925_0078011
248 Ga0395898_0034375
249 Ga0436364_0560677
250 Ga0395901_0108078
251 Ga0436365_1351534
252 Ga0436365_1513564
253 Ga0466965_0032915
254 Ga0466967_0018784
255 Ga0466967_0147955
256 Ga0495603_0008726
257 Ga0495588_0016676
258 Ga0495589_0014424
259 Ga0495636_0003068
260 Ga0495676_0029504
261 Ga0495687_013740
262 Ga0495685_013871
263 Ga0496101_0086072
264 Ga0496102_0030633
265 Ga0496102_0091243
266 Ga0496102_0106173
267 Ga0496105_0052974
268 Ga0496106_0021446
269 Ga0496106_0182920
270 Ga0496107_0010641
271 Ga0496109_0053011
272 Ga0496109_0057330
273 Ga0496109_0167539
274 Ga0496110_0022107
275 Ga0496113_0011500
276 Ga0496114_0058293
277 Ga0496115_0024360
278 Ga0501036_0010432
279 Ga0501036_0020081
280 Ga0501036_0133437
281 Ga0501037_0017272
282 Ga0501038_0015193
283 Ga0501039_0002625
284 Ga0501039_0064248
285 Ga0501040_0001116
286 Ga0501041_0003951
287 Ga0501042_0017310
288 Ga0501042_0032401
289 Ga0501046_0026680
290 Ga0501047_0019262
291 Ga0501048_0003295
292 Ga0501071_0000178
293 Ga0501072_0012025
294 Ga0501072_0026386
295 Ga0501074_0010767
296 Ga0501075_0002164
297 Ga0501076_0001841
298 Ga0501076_0025059
299 Ga0501079_0007848
300 Ga0501079_0055842
301 Ga0501080_0025097
302 Ga0501081_0020507
303 Ga0501045_0037531
304 nmdc:mga05p37_304_c1
305 nmdc:mga05p37_807_c1
306 nmdc:mga09592_2175_c1
307 nmdc:mga09592_3328_c1
308 nmdc:mga0qj67_29945_c1
309 nmdc:mga0qj67_3591_c1
310 nmdc:mga0qj67_5313_c1
311 nmdc:mga0qj67_5984_c1
312 nmdc:mga06r32_118605_c1
313 nmdc:mga06r32_17064_c1
314 nmdc:mga06r32_43499_c1
315 nmdc:mga06r32_83_c1
316 nmdc:mga08y16_10912_c1
317 nmdc:mga08y16_122067_c1
318 nmdc:mga08y16_39126_c1
319 nmdc:mga0a205_121724_c1
320 nmdc:mga0a205_85802_c1
321 Ga0501084_0011157
322 2870784502
323 2523385341
324 2558911268
325 2676485234
326 2791912386
327 2816508567
328 2837272920
329 2862581739
330 2895439554
331 2899370640
332 2984580485
333 2990258177
334 2995726441

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02776

TPP_enzyme_N

Thiamine pyrophosphate enzyme, N-terminal TPP binding domain

1

111

0.94

PF00205

TPP_enzyme_M

Thiamine pyrophosphate enzyme, central domain

205

338

0.93

PF02775

TPP_enzyme_C

Thiamine pyrophosphate enzyme, C-terminal TPP binding domain

419

564

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
8i01-assembly2.cif.gz_F crystal structure of escherichia coli glyoxylate carboligase 0.8797 2 507
6dek-assembly1.cif.gz_A crystal structure of candida albicans acetohydroxyacid synthase catalytic subunit 0.8774 3 512
8i08-assembly1.cif.gz_A crystal structure of escherichia coli glyoxylate carboligase quadruple mutant 0.8769 3 507
5wkc-assembly2.cif.gz_E saccharomyces cerevisiae acetohydroxyacid synthase in complex with the herbicide penoxsulam 0.8758 3 512
2pan-assembly1.cif.gz_A crystal structure of e. coli glyoxylate carboligase 0.8737 2 507
ID Description Score Start End Superfamily
af_C0PCJ8_81_201_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9306 13 110 3.40.50.970
af_Q0JMH0_1_188_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9218 2 164 3.40.50.970
af_P9WG39_1_179_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9152 2 164 3.40.50.970
af_Q2FV86_1_181_3.40.50.970 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9113 2 164 3.40.50.970
2c31A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains 0.9107 2 160 3.40.50.970
ID Description Score Start End GO Terms
AF-A0A7Y6IKZ8-F1-model_v4 Thiamine pyrophosphate-binding protein 0.9502 2 522 GO:0000287
GO:0003984
GO:0005948
GO:0009097
GO:0009099
GO:0030976
GO:0050660
AF-A0A7Y6IKZ8-F1-model_v4 Thiamine pyrophosphate-binding protein 0.9467 2 522 GO:0000287
GO:0003984
GO:0005948
GO:0009097
GO:0009099
GO:0030976
GO:0050660
AF-A0A535BRN8-F1-model_v4 Thiamine pyrophosphate-binding protein 0.9365 35 375 GO:0000287
GO:0003984
GO:0005948
GO:0009097
GO:0009099
GO:0030976
GO:0050660
AF-A0A372JQG0-F1-model_v4 Thiamine pyrophosphate-binding protein 0.9361 2 175 GO:0000287
GO:0003984
GO:0005948
GO:0009097
GO:0009099
GO:0030976
GO:0050660
AF-A0A515KH17-F1-model_v4 Thiamine pyrophosphate-binding protein 0.9348 2 522 GO:0000287
GO:0003984
GO:0005948
GO:0009097
GO:0009099
GO:0030976
GO:0050660

Map