F251042

General Info

Members Datasets Scaffolds Average Seq Length
167 130 132 388

Family's Representative Sequence

Representative Sequence 3300044658|Ga0466972_0064070|Ga0466972_0064070_229_1494
Length 421
Sequence VEAAPPPLLARPRLAHAVLLEAPPGGASAYAAAMKIAIVGTGYVGLSNAVILAQHHEVWALDLDASKVEKVNNRVSPIEDAELEDYLAHRPLDLTATLDKQAAYDGASFVVIATPTDYDERTNYFNTATVEAVIADVLAINPSATMIIKSTVPVGFTRRMREANPGASIIFSPEFLREGRALHDNLHPSRIIVGEHSEQAKAFADLLLEGAIDKDVPVLFTGSTEAEAIKLFANTYLALRVAYFNELDTYAAMHGLDSAQIIEGVGLDPRIGSHYNNPSFGYGGYCLPKDTKQLQANYKEVPQNLISAIVEANTTRKDFIATDILRRSPRTVGIYRLIMKAGSDNFRMSSIQGVMKRIKAKGVEVVVYEPTLPEETFYNSRVIRDLDEFKRISDVIVANRRTELLDDVAEKVYTRDIYGRD

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2515154155 Actinopolymorpha alba DSM 45243 Isolate Rhizosphere
3 2643221576 Nocardioides sp. Root614 Isolate Unclassified
4 2643221590 Nocardioides sp. Root682 Isolate Unclassified
5 2643221604 Nocardioides sp. Root190 Isolate Unclassified
6 2643221615 Nocardioides sp. Root224 Isolate Unclassified
7 2643221617 Nocardioides sp. Root79 Isolate Unclassified
8 2643221620 Nocardioides sp. Root240 Isolate Unclassified
9 2643221657 Nocardioides sp. Root1257 Isolate Unclassified
10 2643221697 Aeromicrobium sp. Root495 Isolate Unclassified
11 2643221724 Microbacterium sp. Root280D1 Isolate Unclassified
12 2738541272 Promicromonospora sp. AC04 Isolate Unclassified
13 2738541305 Nocardioides sp. CF167 Isolate Unclassified
14 2773857762 Nocardioides sp. SAI-095 Isolate Unclassified
15 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
16 2811994874 Nocardioides sp. SLBN-35 Isolate Unclassified
17 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
18 2835188231 Isoptericola variabilis JZ7 Isolate Unclassified
19 2857481737 Nocardioides sp. R-74106 Isolate Unclassified
20 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified
21 2894817345 Aureimonas psammosilenae YIM DR1026 Isolate Unclassified
22 2899275550 Paracoccus hibiscisoli CCTCC AB2016182 Isolate Rhizosphere
23 2904479285 Comamonas sediminis 4487 Isolate Rhizosphere
24 2916178963 Pseudoalteromonas rhizosphaerae RA15 Isolate Rhizosphere
25 2919534386 Rheinheimera pacifica 3879 Isolate Unclassified
26 2928115317 Pseudacidovorax sp. 1753 Isolate Rhizosphere
27 2929138655 Agrobacterium sp. R-72433 Hybrid assembly Isolate Unclassified
28 2939607340 Leclercia sp. 1548 Isolate Rhizosphere
29 2941475908 Stenotrophomonas rhizophila 2680 Isolate Rhizosphere
30 2984576629 Nocardioides zeae SORGH_AS913 Isolate Aerial Root
31 2990256926 Nocardioides zeae SORGH_AS885 Isolate Aerial Root
32 3300003758 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 Metagenome Endosphere
33 3300003759 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 Metagenome Endosphere
34 3300003760 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 Metagenome Endosphere
35 3300003761 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 Metagenome Endosphere
36 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
37 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
38 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
39 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
40 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
41 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
42 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
43 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
44 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
45 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
46 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
47 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
48 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
49 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
50 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
51 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
52 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
53 3300025228 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMS_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025229 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025230 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
56 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
57 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
59 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
60 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
67 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
68 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
69 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
70 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
71 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
72 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
73 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
74 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
75 3300041453 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_6 MetaG Metagenome Rhizoplane
76 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
77 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
78 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
79 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
80 3300042115 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926W_E14_080116_2642 Metagenome Rhizosphere
81 3300042139 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0727L_E14_072516_1442 Metagenome Rhizosphere
82 3300042146 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 Metagenome Rhizosphere
83 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
84 3300044666 Roots microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1E Metagenome Unclassified
85 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
86 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
87 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
88 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
89 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
90 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
91 3300046474 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 rhizosphere Metagenome Rhizosphere
92 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
93 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
94 3300046525 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co1_23_6 rhizosphere Metagenome Rhizosphere
95 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
96 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
97 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
98 3300046680 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 rhizosphere Metagenome Rhizosphere
99 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
100 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
101 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
102 3300047470 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co1_3_5 rhizosphere Metagenome Rhizosphere
103 3300048088 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL2_56_7 rhizosphere Metagenome Rhizosphere
104 3300048091 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co2_54_7 rhizosphere Metagenome Rhizosphere
105 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
106 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
107 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
108 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
109 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
110 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
111 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
112 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
113 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
114 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
115 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
116 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
117 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
118 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
119 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
120 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
121 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
122 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
123 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
124 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
125 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
126 8004212874 Microbacterium sp. NC79 Isolate Rhizosphere
127 8054558443 Rhizobium alarense TRM95111 Isolate Nodule
128 8055087960 Silvania hatchlandensis H19S6 Isolate Rhizosphere
129 8055097453 Leclercia tamurae H6W5 Isolate Rhizosphere
130 8057132660 Paracoccus rhizosphaerae LMG 21293 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 79.04
Metatranscriptomes 0
Isolates 20.96

Biome Distribution

Category Percentage (%)
Aerial Root 1.2
Bulb 0
Endosphere 12.57
Nodule 0.6
Rhizoplane 3.59
Rhizosphere 45.51
Stem 0
Stem Tuber 0
Unclassified 36.53

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2610082 2162886007 Bacteria 3784
2 Ga0055532_1000191 3300003758 Bacteria 51347
3 Ga0055525_1000004 3300003759 Bacteria 888039
4 Ga0055527_1000117 3300003760 Bacteria 57326
5 Ga0055535_1000246 3300003761 Bacteria 57114
6 Ga0055531_10008333 3300003794 Bacteria 5491
7 Ga0065704_10071157 3300005289 Bacteria 12792
8 Ga0065712_10067753 3300005290 Bacteria 56502
9 Ga0070658_10004624 3300005327 Bacteria 11191
10 Ga0070683_100180252 3300005329 Bacteria 2005
11 Ga0068859_100015112 3300005617 Bacteria 7748
12 Ga0081455_10000186 3300005937 Bacteria 78624
13 Ga0075364_10000182 3300006051 Bacteria 28654
14 Ga0075370_10116716 3300006353 Bacteria 1552
15 Ga0097620_100015112 3300006931 Bacteria 7748
16 Ga0105251_10001037 3300009011 Bacteria 24402
17 Ga0105244_10000523 3300009036 Bacteria 34223
18 Ga0105250_10000307 3300009092 Bacteria 38385
19 Ga0105243_10034328 3300009148 Bacteria 3926
20 Ga0157373_10004496 3300013100 Bacteria 10497
21 Ga0182005_1004637 3300015265 Bacteria 4402
22 Ga0163161_10084544 3300017792 Bacteria 2340
23 Ga0209672_100038 3300025228 Bacteria 286731
24 Ga0209147_100112 3300025229 Bacteria 145046
25 Ga0209563_100013 3300025230 Bacteria 941463
26 Ga0209258_100109 3300025242 Bacteria 203881
27 Ga0209148_1000467 3300025254 Bacteria 43162
28 Ga0209455_1000648 3300025272 Bacteria 21349
29 Ga0209676_1008840 3300025292 Bacteria 4431
30 Ga0209257_1000067 3300025304 Bacteria 342468
31 Ga0207655_1000386 3300025728 Bacteria 61740
32 Ga0207713_1002750 3300025735 Bacteria 12486
33 Ga0207705_10001869 3300025909 Bacteria 16529
34 Ga0207709_10002586 3300025935 Bacteria 11269
35 Ga0207661_10312822 3300025944 Bacteria 1410
36 Ga0209974_10018134 3300027876 Bacteria 2334
37 Ga0307406_10016706 3300031901 Bacteria 4271
38 Ga0307407_10081874 3300031903 Bacteria 1955
39 Ga0316583_10007889 3300032133 Bacteria 3838
40 Ga0395900_0023685 3300037418 Bacteria 6282
41 Ga0395900_0028814 3300037418 Bacteria 5692
42 Ga0395898_0049620 3300037466 Bacteria 4112
43 Ga0395905_0023173 3300037471 Bacteria 5870
44 Ga0395905_0336022 3300037471 Bacteria 1401
45 Ga0395901_0034696 3300038443 Bacteria 5211
46 Ga0400483_056784 3300039062 Bacteria 2031
47 Ga0400483_177846 3300039062 Bacteria 2177
48 Ga0400483_188502 3300039062 Bacteria 26413
49 Ga0451797_1014243 3300041453 Bacteria 2217
50 Ga0451833_0692269 3300041491 Bacteria 8985
51 Ga0451833_0835875 3300041491 Bacteria 2151
52 Ga0451837_0140632 3300041494 Bacteria 2546
53 Ga0439431_0007745 3300041997 Bacteria 2400
54 Ga0439449_0004735 3300042007 Bacteria 5252
55 Ga0450911_000003 3300042115 Bacteria 237055
56 Ga0450904_000215 3300042139 Bacteria 12551
57 Ga0450907_010429 3300042146 Bacteria 1542
58 Ga0466972_0064070 3300044658 Bacteria 1760
59 Ga0466977_0001929 3300044666 Bacteria 9101
60 Ga0466965_0002717 3300044683 Bacteria 7579
61 Ga0466965_0004881 3300044683 Bacteria 5989
62 Ga0466970_0005414 3300044765 Bacteria 6333
63 Ga0466970_0009326 3300044765 Bacteria 4957
64 Ga0466957_0110730 3300044842 Bacteria 1741
65 Ga0466960_0006426 3300044901 Bacteria 4714
66 Ga0466960_0114634 3300044901 Bacteria 1404
67 Ga0495650_0000002 3300046471 Bacteria 1057165
68 Ga0495650_0001696 3300046471 Bacteria 20295
69 Ga0495580_0002607 3300046472 Bacteria 15658
70 Ga0495605_0005524 3300046474 Bacteria 7356
71 Ga0495605_0007120 3300046474 Bacteria 6368
72 Ga0495606_0014853 3300046507 Bacteria 6047
73 Ga0495628_0007235 3300046516 Bacteria 9613
74 Ga0495663_0000257 3300046525 Bacteria 20563
75 Ga0495652_0083661 3300046529 Bacteria 2626
76 Ga0495654_0014643 3300046530 Bacteria 4171
77 Ga0495661_0003385 3300046665 Bacteria 11801
78 Ga0495646_0079910 3300046680 Bacteria 1908
79 Ga0495669_0004961 3300046684 Bacteria 5531
80 Ga0495649_0006289 3300046694 Bacteria 7388
81 Ga0495649_0007418 3300046694 Bacteria 6684
82 Ga0495676_0000021 3300047321 Bacteria 166180
83 Ga0495681_0000125 3300047470 Bacteria 67542
84 Ga0495681_0080217 3300047470 Bacteria 1458
85 Ga0495602_0000643 3300048088 Bacteria 32671
86 Ga0495626_0001249 3300048091 Bacteria 20852
87 Ga0495626_0006602 3300048091 Bacteria 6577
88 Ga0496102_0000121 3300048905 Bacteria 112133
89 Ga0496103_0000220 3300048906 Bacteria 56435
90 Ga0496104_0001319 3300048907 Bacteria 21414
91 Ga0496104_0034708 3300048907 Bacteria 4705
92 Ga0496105_0000972 3300048908 Bacteria 19707
93 Ga0496116_0001484 3300048919 Bacteria 26174
94 Ga0496116_0059663 3300048919 Bacteria 2479
95 Ga0496117_0003053 3300048920 Bacteria 20067
96 Ga0496118_0039406 3300048921 Bacteria 3771
97 Ga0496118_0074017 3300048921 Bacteria 2437
98 Ga0496119_0000497 3300048922 Bacteria 53611
99 Ga0496119_0001533 3300048922 Bacteria 27605
100 Ga0496119_0002400 3300048922 Bacteria 20563
101 Ga0496120_0002250 3300048923 Bacteria 20163
102 Ga0496120_0003348 3300048923 Bacteria 14718
103 Ga0496120_0052382 3300048923 Bacteria 2325
104 Ga0496121_0000005 3300048924 Bacteria 1034486
105 Ga0496121_0003994 3300048924 Bacteria 20349
106 Ga0496121_0090700 3300048924 Bacteria 2388
107 Ga0496122_0004394 3300048925 Bacteria 17551
108 Ga0496122_0006717 3300048925 Bacteria 13090
109 Ga0496122_0007171 3300048925 Bacteria 12486
110 Ga0496122_0061610 3300048925 Bacteria 2752
111 Ga0496123_0001770 3300048926 Bacteria 28492
112 Ga0496123_0003453 3300048926 Bacteria 17675
113 Ga0496123_0005031 3300048926 Bacteria 13525
114 Ga0496123_0062618 3300048926 Bacteria 2382
115 Ga0496123_0102976 3300048926 Bacteria 1655
116 Ga0496124_0001986 3300048927 Bacteria 27897
117 Ga0496124_0003681 3300048927 Bacteria 18540
118 Ga0496124_0008713 3300048927 Bacteria 10540
119 Ga0496124_0033459 3300048927 Bacteria 4522
120 Ga0496125_0000163 3300048928 Bacteria 148473
121 Ga0496125_0003216 3300048928 Bacteria 20163
122 Ga0496125_0050852 3300048928 Bacteria 3426
123 Ga0496126_0000370 3300048929 Bacteria 92802
124 Ga0496126_0002628 3300048929 Bacteria 23887
125 Ga0496126_0003633 3300048929 Bacteria 19284
126 Ga0501070_0010242 3300049586 Bacteria 7932
127 nmdc:mga00v17_35475_c1 3300050491 Bacteria 2968
128 nmdc:mga00v17_387_c1 3300050491 Bacteria 24784
129 Ga0500556_0000359 3300053104 Bacteria 33876
130 Ga0500593_002007 3300053117 Bacteria 7379
131 Ga0500573_0018136 3300053140 Bacteria 4011
132 Ga0500620_065816 3300053155 Bacteria 1240

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 2899275550 2899278209 360
2 3300025292 Ga0209676_1008840 Ga0209676_10088402 366
3 3300037418 Ga0395900_0028814 Ga0395900_0028814_2960_4126 368
4 3300046529 Ga0495652_0083661 Ga0495652_0083661_846_1961 370
5 3300047470 Ga0495681_0080217 Ga0495681_0080217_332_1447 371
6 3300005327 Ga0070658_10004624 Ga0070658_100046248 381
7 3300025909 Ga0207705_10001869 Ga0207705_100018692 381
8 3300041491 Ga0451833_0692269 Ga0451833_0692269_7028_8194 382
9 iso_pu_bacteria 2857481737 2857482468 383
10 iso_pu_bacteria 2515154155 2515853553 384
11 iso_pu_bacteria 2643221576 2643890369 384
12 iso_pu_bacteria 2643221590 2643959425 384
13 iso_pu_bacteria 2643221604 2644033115 384
14 iso_pu_bacteria 2643221615 2644090878 384
15 iso_pu_bacteria 2643221617 2644099861 384
16 iso_pu_bacteria 2643221620 2644117467 384
17 iso_pu_bacteria 2643221657 2644320681 384
18 iso_pu_bacteria 2643221697 2644539273 384
19 iso_pu_bacteria 2643221724 2644681033 384
20 iso_pu_bacteria 2738541272 2738693136 384
21 iso_pu_bacteria 2738541305 2738871737 384
22 iso_pu_bacteria 2808606439 2809197853 384
23 iso_pu_bacteria 2811994874 2812331151 384
24 iso_pu_bacteria 2811994878 2812347653 384
25 iso_pu_bacteria 2835188231 2835190233 384
26 iso_pu_bacteria 2891968417 2891968938 384
27 iso_pu_bacteria 2894817345 2894818599 384
28 iso_pu_bacteria 2904479285 2904482124 384
29 iso_pu_bacteria 2916178963 2916179844 384
30 iso_pu_bacteria 2928115317 2928115741 384
31 iso_pu_bacteria 2929138655 2929143248 384
32 iso_pu_bacteria 2939607340 2939609584 384
33 iso_pu_bacteria 2941475908 2941476916 384
34 iso_pu_bacteria 2984576629 2984577507 384
35 iso_pu_bacteria 2990256926 2990259668 384
36 iso_pu_bacteria 8004212874 8004213299 384
37 iso_pu_bacteria 8054558443 8054561826 384
38 iso_pu_bacteria 8055087960 8055091541 384
39 iso_pu_bacteria 8055097453 8055100772 384
40 iso_pu_bacteria 2919534386 2919537101 387
41 iso_pu_bacteria 8057132660 8057136568 387
42 3300003758 Ga0055532_1000191 Ga0055532_100019127 388
43 3300003759 Ga0055525_1000004 Ga0055525_1000004438 388
44 3300003760 Ga0055527_1000117 Ga0055527_100011718 388
45 3300003761 Ga0055535_1000246 Ga0055535_100024618 388
46 3300003794 Ga0055531_10008333 Ga0055531_100083334 388
47 3300005290 Ga0065712_10067753 Ga0065712_100677533 388
48 3300005329 Ga0070683_100180252 Ga0070683_1001802521 388
49 3300005617 Ga0068859_100015112 Ga0068859_1000151128 388
50 3300005937 Ga0081455_10000186 Ga0081455_100001864 388
51 3300006051 Ga0075364_10000182 Ga0075364_1000018220 388
52 3300006353 Ga0075370_10116716 Ga0075370_101167161 388
53 3300006931 Ga0097620_100015112 Ga0097620_1000151128 388
54 3300009036 Ga0105244_10000523 Ga0105244_100005234 388
55 3300009148 Ga0105243_10034328 Ga0105243_100343282 388
56 3300013100 Ga0157373_10004496 Ga0157373_100044969 388
57 3300017792 Ga0163161_10084544 Ga0163161_100845442 388
58 3300025228 Ga0209672_100038 Ga0209672_100038118 388
59 3300025229 Ga0209147_100112 Ga0209147_10011238 388
60 3300025230 Ga0209563_100013 Ga0209563_100013438 388
61 3300025242 Ga0209258_100109 Ga0209258_10010958 388
62 3300025254 Ga0209148_1000467 Ga0209148_100046713 388
63 3300025272 Ga0209455_1000648 Ga0209455_100064813 388
64 3300025304 Ga0209257_1000067 Ga0209257_100006779 388
65 3300025728 Ga0207655_1000386 Ga0207655_100038644 388
66 3300025935 Ga0207709_10002586 Ga0207709_100025868 388
67 3300025944 Ga0207661_10312822 Ga0207661_103128221 388
68 3300031901 Ga0307406_10016706 Ga0307406_100167062 388
69 3300037418 Ga0395900_0023685 Ga0395900_0023685_1836_3002 388
70 3300037466 Ga0395898_0049620 Ga0395898_0049620_1328_2494 388
71 3300037471 Ga0395905_0023173 Ga0395905_0023173_3620_4786 388
72 3300037471 Ga0395905_0336022 Ga0395905_0336022_206_1372 388
73 3300038443 Ga0395901_0034696 Ga0395901_0034696_2489_3655 388
74 3300039062 Ga0400483_056784 Ga0400483_056784_553_1725 388
75 3300039062 Ga0400483_177846 Ga0400483_177846_211_1383 388
76 3300039062 Ga0400483_188502 Ga0400483_188502_19011_20183 388
77 3300041491 Ga0451833_0835875 Ga0451833_0835875_758_1924 388
78 3300041494 Ga0451837_0140632 Ga0451837_0140632_762_1928 388
79 3300041997 Ga0439431_0007745 Ga0439431_0007745_129_1295 388
80 3300042007 Ga0439449_0004735 Ga0439449_0004735_2168_3334 388
81 3300042115 Ga0450911_000003 Ga0450911_000003_38936_40102 388
82 3300042139 Ga0450904_000215 Ga0450904_000215_7380_8546 388
83 3300042146 Ga0450907_010429 Ga0450907_010429_15_1181 388
84 3300044666 Ga0466977_0001929 Ga0466977_0001929_2760_3926 388
85 3300044683 Ga0466965_0002717 Ga0466965_0002717_14_1180 388
86 3300044683 Ga0466965_0004881 Ga0466965_0004881_3481_4647 388
87 3300044765 Ga0466970_0009326 Ga0466970_0009326_2391_3557 388
88 3300044842 Ga0466957_0110730 Ga0466957_0110730_430_1596 388
89 3300044901 Ga0466960_0006426 Ga0466960_0006426_1654_2820 388
90 3300044901 Ga0466960_0114634 Ga0466960_0114634_211_1377 388
91 3300046471 Ga0495650_0000002 Ga0495650_0000002_766050_767216 388
92 3300046471 Ga0495650_0001696 Ga0495650_0001696_17059_18225 388
93 3300046472 Ga0495580_0002607 Ga0495580_0002607_13643_14812 388
94 3300046474 Ga0495605_0005524 Ga0495605_0005524_1820_2986 388
95 3300046474 Ga0495605_0007120 Ga0495605_0007120_928_2094 388
96 3300046507 Ga0495606_0014853 Ga0495606_0014853_2137_3303 388
97 3300046516 Ga0495628_0007235 Ga0495628_0007235_6656_7825 388
98 3300046525 Ga0495663_0000257 Ga0495663_0000257_1938_3104 388
99 3300046530 Ga0495654_0014643 Ga0495654_0014643_2939_4105 388
100 3300046665 Ga0495661_0003385 Ga0495661_0003385_600_1766 388
101 3300046680 Ga0495646_0079910 Ga0495646_0079910_116_1285 388
102 3300046694 Ga0495649_0006289 Ga0495649_0006289_4523_5689 388
103 3300046694 Ga0495649_0007418 Ga0495649_0007418_5137_6303 388
104 3300047321 Ga0495676_0000021 Ga0495676_0000021_102106_103272 388
105 3300047470 Ga0495681_0000125 Ga0495681_0000125_36545_37711 388
106 3300048088 Ga0495602_0000643 Ga0495602_0000643_3695_4864 388
107 3300048091 Ga0495626_0001249 Ga0495626_0001249_14940_16106 388
108 3300048091 Ga0495626_0006602 Ga0495626_0006602_1312_2478 388
109 3300048905 Ga0496102_0000121 Ga0496102_0000121_4156_5322 388
110 3300048906 Ga0496103_0000220 Ga0496103_0000220_4156_5322 388
111 3300048907 Ga0496104_0001319 Ga0496104_0001319_4976_6142 388
112 3300048907 Ga0496104_0034708 Ga0496104_0034708_1643_2812 388
113 3300048908 Ga0496105_0000972 Ga0496105_0000972_4917_6083 388
114 3300048919 Ga0496116_0001484 Ga0496116_0001484_18422_19588 388
115 3300048919 Ga0496116_0059663 Ga0496116_0059663_476_1642 388
116 3300048920 Ga0496117_0003053 Ga0496117_0003053_2587_3753 388
117 3300048921 Ga0496118_0039406 Ga0496118_0039406_134_1303 388
118 3300048921 Ga0496118_0074017 Ga0496118_0074017_690_1856 388
119 3300048922 Ga0496119_0001533 Ga0496119_0001533_22098_23264 388
120 3300048922 Ga0496119_0002400 Ga0496119_0002400_5320_6486 388
121 3300048923 Ga0496120_0002250 Ga0496120_0002250_14078_15244 388
122 3300048923 Ga0496120_0052382 Ga0496120_0052382_535_1701 388
123 3300048924 Ga0496121_0000005 Ga0496121_0000005_709232_710398 388
124 3300048924 Ga0496121_0003994 Ga0496121_0003994_17331_18500 388
125 3300048924 Ga0496121_0090700 Ga0496121_0090700_965_2131 388
126 3300048925 Ga0496122_0004394 Ga0496122_0004394_4920_6086 388
127 3300048925 Ga0496122_0006717 Ga0496122_0006717_1010_2176 388
128 3300048925 Ga0496122_0007171 Ga0496122_0007171_2844_4010 388
129 3300048925 Ga0496122_0061610 Ga0496122_0061610_203_1369 388
130 3300048926 Ga0496123_0001770 Ga0496123_0001770_10407_11573 388
131 3300048926 Ga0496123_0003453 Ga0496123_0003453_11618_12784 388
132 3300048926 Ga0496123_0005031 Ga0496123_0005031_7608_8774 388
133 3300048926 Ga0496123_0062618 Ga0496123_0062618_953_2119 388
134 3300048926 Ga0496123_0102976 Ga0496123_0102976_287_1453 388
135 3300048927 Ga0496124_0001986 Ga0496124_0001986_5556_6722 388
136 3300048927 Ga0496124_0003681 Ga0496124_0003681_4912_6078 388
137 3300048927 Ga0496124_0033459 Ga0496124_0033459_3245_4411 388
138 3300048928 Ga0496125_0000163 Ga0496125_0000163_74715_75881 388
139 3300048928 Ga0496125_0003216 Ga0496125_0003216_14078_15244 388
140 3300048928 Ga0496125_0050852 Ga0496125_0050852_2221_3387 388
141 3300048929 Ga0496126_0000370 Ga0496126_0000370_28688_29857 388
142 3300048929 Ga0496126_0002628 Ga0496126_0002628_3860_5029 388
143 3300048929 Ga0496126_0003633 Ga0496126_0003633_4929_6095 388
144 3300049586 Ga0501070_0010242 Ga0501070_0010242_6687_7853 388
145 3300050491 nmdc:mga00v17_387_c1 nmdc:mga00v17_387_c1_3704_4870 388
146 3300053104 Ga0500556_0000359 Ga0500556_0000359_7686_8852 388
147 3300053117 Ga0500593_002007 Ga0500593_002007_1082_2248 388
148 3300053140 Ga0500573_0018136 Ga0500573_0018136_694_1860 388
149 3300053155 Ga0500620_065816 Ga0500620_065816_20_1186 388
150 3300032133 Ga0316583_10007889 Ga0316583_100078892 390
151 3300009011 Ga0105251_10001037 Ga0105251_1000103710 391
152 3300009092 Ga0105250_10000307 Ga0105250_100003078 391
153 3300025735 Ga0207713_1002750 Ga0207713_10027503 391
154 3300041453 Ga0451797_1014243 Ga0451797_1014243_904_2079 391
155 3300046684 Ga0495669_0004961 Ga0495669_0004961_3087_4265 392
156 3300015265 Ga0182005_1004637 Ga0182005_10046372 393
157 3300050491 nmdc:mga00v17_35475_c1 nmdc:mga00v17_35475_c1_1348_2547 399
158 3300044765 Ga0466970_0005414 Ga0466970_0005414_4218_5429 403
159 3300027876 Ga0209974_10018134 Ga0209974_100181342 404
160 3300048927 Ga0496124_0008713 Ga0496124_0008713_9213_10427 404
161 iso_pu_bacteria 2773857762 2774396224 407
162 3300031903 Ga0307407_10081874 Ga0307407_100818741 411
163 3300048922 Ga0496119_0000497 Ga0496119_0000497_26875_28122 411
164 3300048923 Ga0496120_0003348 Ga0496120_0003348_8673_9920 411
165 3300044658 Ga0466972_0064070 Ga0466972_0064070_229_1494 417
166 2162886007 SwRhRL2b_contig_2610082 SwRhRL2b_0397.00005260 418
167 3300005289 Ga0065704_10071157 Ga0065704_100711573 418

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00984

UDPG_MGDP_dh

UDP-glucose/GDP-mannose dehydrogenase family, central domain

224

315

0.96

PF03720

UDPG_MGDP_dh_C

UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain

333

418

0.88

PF03721

UDPG_MGDP_dh_N

UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain

34

207

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
3pjg-assembly1.cif.gz_A-2 crystal structure of udp-glucose dehydrogenase from klebsiella pneumoniae complexed with product udp-glucuronic acid 0.9585 31 418
6f7v-assembly1.cif.gz_A crystal structure of lkce e64q mutant in complex with lc-ka05 0.9544 30 60
3pjg-assembly1.cif.gz_A-2 crystal structure of udp-glucose dehydrogenase from klebsiella pneumoniae complexed with product udp-glucuronic acid 0.9537 31 418
6f7l-assembly1.cif.gz_A crystal structure of lkce r326q mutant in complex with its substrate 0.9488 30 60
4bjy-assembly1.cif.gz_A-2 crystal structure of 3-hydroxybenzoate 6-hydroxylase uncovers lipid- assisted flavoprotein strategy for regioselective aromatic hydroxylation: platinum derivative 0.9452 31 60
ID Description Score Start End Superfamily
3plrA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9907 29 227 3.40.50.720
3plrA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9857 29 227 3.40.50.720
3plrA03 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9805 319 416 3.40.50.720
3pidA03 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9735 319 418 3.40.50.720
1dljA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9715 31 227 3.40.50.720
ID Description Score Start End GO Terms
AF-Q937X3-F1-model_v4 UDP-glucose 6-dehydrogenase 0.9998 31 148 GO:0016616
GO:0051287
AF-K1T2J3-F1-model_v4 UDP-glucose 6-dehydrogenase 0.999 31 134 GO:0016616
GO:0051287
AF-A0A4P1AW37-F1-model_v4 deleted 0.9984 31 234
AF-A0A521IN90-F1-model_v4 UDP-glucose 6-dehydrogenase 0.9968 31 115 GO:0016616
GO:0051287
AF-A0A1F2PE00-F1-model_v4 UDP-glucose 6-dehydrogenase (EC 1.1.1.22) 0.9962 31 111 GO:0003979
GO:0051287

Feature Viewer

pLDDT pTM Quality
85.51 0.82 High
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Predicted Structure (AlphaFold2)

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