F250948

General Info

Members Datasets Scaffolds Average Seq Length
167 121 138 334

Family's Representative Sequence

Representative Sequence 3300038443|Ga0395901_0152417|Ga0395901_0152417_1155_2330
Length 391
Sequence MYQFQKGPFIEYVRKLHWILHIDIFLLHISCHFAVKPKPSYPVSFQNQNQTKTIISMAEVKKINRRQAIGNIGVAMAIAAIVPSTLTAKDNKTDRSAQEGLQDPITKYPKPPFQGQSQPWPGLASKMDPKPDHGEKSYVGSGRLKGRKALITGGDSGMGRAAAIAYAREGADVAIAYYPTEEPDAKEVIDLIKAEGRKAVAIPGDLREESFCTKMVDEAIKGLGGLDILVNNAGRQQTHASILDISTEQFDWTMKTNIYAPFWTIKAALPHMKPESVIIGTASEQAYDPSPDLYDYAQTKAATMNYIKSLAKQLASKGIRVNGVAPGPIWTPLQVSGGATQEKLKNFGGQTPFGRPGQPAELSSIYVQLADNSGSFATGQIYGSSGGAGQP

Samples

Sample ID Description Type Environment
1 2519899754 Flavobacterium sp. F52 Isolate Rhizosphere
2 2643221667 Flavobacterium sp. Root420 Isolate Unclassified
3 2643221725 Flavobacterium sp. Root935 Isolate Unclassified
4 2739367857 Flavobacterium sp. GV029 Isolate Unclassified
5 2739367858 Flavobacterium sp. GV028 Isolate Unclassified
6 2802428842 Flavobacterium sp. S87F.05.LMB.W.Kidney.N Isolate Unclassified
7 2816332280 Flavobacterium johnsoniae GSE09 Isolate Unclassified
8 2818991444 Filimonas endophytica 3197 Isolate Unclassified
9 2839989709 Pontibacter arcticus 2b14 Isolate Unclassified
10 2852623160 Mucilaginibacter sp. AK015 Isolate Rhizosphere
11 2852627209 Pedobacter sp. AK017 Isolate Rhizosphere
12 2857613821 Flavobacterium sp. R-72247 Isolate Unclassified
13 2857618242 Flavobacterium sp. R-74482 Isolate Unclassified
14 2881359912 Flavobacterium ustbae T13 Isolate Rhizosphere
15 2884791551 Chitinophaga oryzae 1310 Isolate Unclassified
16 2884933994 Mucilaginibacter sp. 14171R-50 Isolate Rhizosphere
17 2903895155 Flavobacterium sp. HBTb2-11-1 Isolate Rhizosphere
18 2904419702 Flavobacterium sp. 1355 Isolate Rhizosphere
19 2904780799 Sphingobacterium sp. 1304 Isolate Rhizosphere
20 2910245624 Adhaeribacter radiodurans KUDC8001 Isolate Rhizosphere
21 2919177583 Sphingobacterium sp. 2149 Isolate Rhizosphere
22 2919191525 Flavobacterium sp. 2755 Isolate Rhizosphere
23 2919683626 Flavobacterium piscis 4129 Isolate Unclassified
24 2929150217 Flavobacterium sp. R-74510 Hybrid assembly Isolate Unclassified
25 2929154850 Filimonas sp. R-72421 Hybrid assembly Isolate Unclassified
26 2946787523 Sphingomonas faeni W4I17 Isolate Rhizosphere
27 2958512119 Flavobacterium sp. Sd200 Isolate Rhizosphere
28 2977232053 Mucilaginibacter terrae SORGH_AS 422 Isolate Unclassified
29 2977268062 Flavobacterium sp. SORGH_AS 622 Isolate Unclassified
30 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
31 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
32 3300003794 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 Metagenome Endosphere
33 3300003911 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
34 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
35 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
36 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
37 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
38 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
39 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
40 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
41 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
42 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
43 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
44 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
45 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
46 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
47 3300006948 Root nodule microbial communities of legume samples collected from California, USA - M. trunc garden sep15 Metagenome Nodule
48 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
49 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
50 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
51 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
52 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
53 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
54 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
55 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
56 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
57 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
58 3300015261 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-104_1 MetaG Metagenome Rhizosphere
59 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
60 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
61 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
74 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
75 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
76 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
77 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
78 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
79 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
80 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
81 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
82 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
83 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
84 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
85 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
86 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
87 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
88 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
89 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
90 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
91 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
92 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
93 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
94 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
95 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
96 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
97 3300046500 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 rhizosphere Metagenome Rhizosphere
98 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
99 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
100 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
101 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
102 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
103 3300046518 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 rhizosphere Metagenome Rhizosphere
104 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
105 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
106 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
107 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
108 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
109 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
110 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
111 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
112 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
113 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
114 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
115 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
116 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
117 3300049679 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G11_B_3_drought Metagenome Rhizosphere
118 3300049763 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C11_A_4_control Metagenome Rhizosphere
119 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
120 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
121 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 82.63
Metatranscriptomes 0
Isolates 17.37

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.99
Nodule 1.2
Rhizoplane 0.6
Rhizosphere 80.24
Stem 0
Stem Tuber 0
Unclassified 14.97

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootL2_10119913 3300003322 Bacteria 1491
2 rootH1_10027584 3300003323 Bacteria 7602
3 Ga0055531_10000029 3300003794 Bacteria 159248
4 JGI25405J52794_10000254 3300003911 Bacteria 7105
5 Ga0065714_10003792 3300005288 Bacteria 6093
6 Ga0070683_100007863 3300005329 Bacteria 9033
7 Ga0070666_10086888 3300005335 Bacteria 2143
8 Ga0068853_100081694 3300005539 Bacteria 2830
9 Ga0068855_100005014 3300005563 Bacteria 16163
10 Ga0068855_100032188 3300005563 Bacteria 6262
11 Ga0068857_100000360 3300005577 Bacteria 31775
12 Ga0068857_100124593 3300005577 Bacteria 2321
13 Ga0068854_100010704 3300005578 Bacteria 5953
14 Ga0068856_100016087 3300005614 Bacteria 7231
15 Ga0068856_100024278 3300005614 Bacteria 5900
16 Ga0068856_100071449 3300005614 Bacteria 3436
17 Ga0068852_100000427 3300005616 Bacteria 28012
18 Ga0068860_100000026 3300005843 Bacteria 270483
19 Ga0081455_10001114 3300005937 Bacteria 33709
20 Ga0068871_100230344 3300006358 Bacteria 1608
21 Ga0099824_1007666 3300006942 Bacteria 14176
22 Ga0099826_10002174 3300006948 Bacteria 12490
23 Ga0105240_10000520 3300009093 Bacteria 70859
24 Ga0105240_10010911 3300009093 Bacteria 12731
25 Ga0105240_10014745 3300009093 Bacteria 10661
26 Ga0105241_10000692 3300009174 Bacteria 25426
27 Ga0105241_10142161 3300009174 Bacteria 1955
28 Ga0105237_10000310 3300009545 Bacteria 67887
29 Ga0105237_10000830 3300009545 Bacteria 42322
30 Ga0105237_10010168 3300009545 Bacteria 10026
31 Ga0105237_10197063 3300009545 Bacteria 2014
32 Ga0105238_10002208 3300009551 Bacteria 19629
33 Ga0105238_10018843 3300009551 Bacteria 7026
34 Ga0105238_10069590 3300009551 Bacteria 3519
35 Ga0105239_10061155 3300010375 Bacteria 4133
36 Ga0157373_10000002 3300013100 Bacteria 750094
37 Ga0157373_10000072 3300013100 Bacteria 88770
38 Ga0157370_10000097 3300013104 Bacteria 99144
39 Ga0157370_10031347 3300013104 Bacteria 5202
40 Ga0157370_10066598 3300013104 Bacteria 3406
41 Ga0157370_10071798 3300013104 Bacteria 3267
42 Ga0157369_10170964 3300013105 Bacteria 2290
43 Ga0157369_10323252 3300013105 Bacteria 1604
44 Ga0163162_10022433 3300013306 Bacteria 6218
45 Ga0157372_10001086 3300013307 Bacteria 29610
46 Ga0182006_1003218 3300015261 Bacteria 8486
47 Ga0182006_1004034 3300015261 Bacteria 7325
48 Ga0213876_10114341 3300021384 Bacteria 1432
49 Ga0209257_1000005 3300025304 Bacteria 1592528
50 Ga0209257_1000013 3300025304 Bacteria 1047305
51 Ga0207680_10087162 3300025903 Bacteria 1976
52 Ga0207647_10018760 3300025904 Bacteria 4669
53 Ga0207654_10001582 3300025911 Bacteria 11960
54 Ga0207695_10001716 3300025913 Bacteria 35061
55 Ga0207695_10002400 3300025913 Bacteria 27777
56 Ga0207695_10012734 3300025913 Bacteria 10070
57 Ga0207695_10228263 3300025913 Bacteria 1767
58 Ga0207671_10000366 3300025914 Bacteria 64454
59 Ga0207671_10000609 3300025914 Bacteria 47411
60 Ga0207671_10005122 3300025914 Bacteria 12214
61 Ga0207694_10012064 3300025924 Bacteria 6514
62 Ga0207694_10047752 3300025924 Bacteria 3311
63 Ga0207694_10157752 3300025924 Bacteria 1831
64 Ga0207667_10000519 3300025949 Bacteria 50770
65 Ga0207667_10019043 3300025949 Bacteria 7673
66 Ga0207639_10037458 3300026041 Bacteria 3602
67 Ga0207702_10017634 3300026078 Bacteria 5908
68 Ga0207702_10091085 3300026078 Bacteria 2669
69 Ga0207674_10001621 3300026116 Bacteria 28946
70 Ga0207674_10052996 3300026116 Bacteria 4135
71 Ga0207698_10001833 3300026142 Bacteria 12414
72 Ga0207698_10230007 3300026142 Bacteria 1682
73 Ga0268264_10000455 3300028381 Bacteria 55791
74 Ga0265327_10121544 3300031251 Bacteria 1237
75 Ga0307410_10000731 3300031852 Bacteria 13733
76 Ga0307412_10122701 3300031911 Bacteria 1873
77 Ga0307416_100003013 3300032002 Bacteria 9836
78 Ga0307414_10000002 3300032004 Bacteria 623006
79 Ga0307414_10075259 3300032004 Bacteria 2449
80 Ga0307414_10229598 3300032004 Unclassified 1529
81 Ga0307411_10000001 3300032005 Bacteria 931810
82 Ga0307411_10230826 3300032005 Bacteria 1442
83 Ga0307510_10013261 3300033180 Bacteria 9774
84 Ga0395899_0000002 3300037312 Bacteria 1324310
85 Ga0395900_0001195 3300037418 Bacteria 32119
86 Ga0395900_0146021 3300037418 Bacteria 2419
87 Ga0395905_0000208 3300037471 Bacteria 91236
88 Ga0395901_0152417 3300038443 Bacteria 2429
89 Ga0436361_0130382 3300039447 Bacteria 1730
90 Ga0436363_1096900 3300039450 Bacteria 1651
91 Ga0451853_0010659 3300041512 Bacteria 3208
92 Ga0466969_0000282 3300044656 Bacteria 27814
93 Ga0466972_0004670 3300044658 Bacteria 6858
94 Ga0466966_0000147 3300044684 Bacteria 44993
95 Ga0466966_0029621 3300044684 Bacteria 3559
96 Ga0466966_0137607 3300044684 Bacteria 1493
97 Ga0466968_0060548 3300044735 Bacteria 1632
98 Ga0466957_0000508 3300044842 Bacteria 19462
99 Ga0466959_0000003 3300045049 Bacteria 285164
100 Ga0466958_0021153 3300045836 Bacteria 3798
101 Ga0466967_0022376 3300045976 Bacteria 5156
102 Ga0495653_0000119 3300046463 Bacteria 65657
103 Ga0495650_0000036 3300046471 Bacteria 400633
104 Ga0495596_0005721 3300046500 Bacteria 5835
105 Ga0495607_0000843 3300046501 Bacteria 29011
106 Ga0495606_0011892 3300046507 Bacteria 7041
107 Ga0495606_0021180 3300046507 Bacteria 4765
108 Ga0495606_0041904 3300046507 Bacteria 3067
109 Ga0495606_0073192 3300046507 Bacteria 2151
110 Ga0495608_0063903 3300046511 Bacteria 2414
111 Ga0495610_0020378 3300046512 Bacteria 3683
112 Ga0495616_0021216 3300046513 Bacteria 3520
113 Ga0495631_0001726 3300046518 Bacteria 12977
114 Ga0495643_0001434 3300046522 Bacteria 22017
115 Ga0495625_0000893 3300046660 Bacteria 40260
116 Ga0495625_0129539 3300046660 Bacteria 1710
117 Ga0495661_0001060 3300046665 Bacteria 24319
118 Ga0495661_0050190 3300046665 Bacteria 2527
119 Ga0495661_0076386 3300046665 Bacteria 1943
120 Ga0495649_0000162 3300046694 Bacteria 58169
121 Ga0495649_0160865 3300046694 Bacteria 1177
122 Ga0495660_0057827 3300046810 Bacteria 2091
123 Ga0495683_0000086 3300047323 Bacteria 92967
124 Ga0495686_0000241 3300047472 Bacteria 98943
125 Ga0495686_0000274 3300047472 Bacteria 91650
126 Ga0495686_0000298 3300047472 Bacteria 85528
127 Ga0495686_0108928 3300047472 Bacteria 1663
128 Ga0496115_0097667 3300048918 Unclassified 2405
129 Ga0496121_0123738 3300048924 Bacteria 1948
130 Ga0496124_0017812 3300048927 Bacteria 6678
131 Ga0496125_0057258 3300048928 Bacteria 3158
132 Ga0501033_0005604 3300049570 Bacteria 9919
133 Ga0501034_0186112 3300049571 Bacteria 2040
134 Ga0501249_000824 3300049679 Bacteria 6872
135 Ga0501266_000014 3300049763 Bacteria 181600
136 Ga0501280_000332 3300049776 Bacteria 11794
137 nmdc:mga0k408_150_c1 3300050493 Bacteria 35565
138 Ga0500641_0039761 3300053096 Bacteria 1896

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049570 Ga0501033_0005604 Ga0501033_0005604_191_1135 312
2 3300003911 JGI25405J52794_10000254 JGI25405J52794_100002546 317
3 3300005937 Ga0081455_10001114 Ga0081455_1000111420 317
4 3300005539 Ga0068853_100081694 Ga0068853_1000816946 318
5 3300013104 Ga0157370_10066598 Ga0157370_100665983 318
6 3300039447 Ga0436361_0130382 Ga0436361_0130382_77_1084 318
7 3300044684 Ga0466966_0029621 Ga0466966_0029621_19_1032 318
8 3300045836 Ga0466958_0021153 Ga0466958_0021153_553_1566 318
9 3300047472 Ga0495686_0000241 Ga0495686_0000241_44783_45787 318
10 3300003794 Ga0055531_10000029 Ga0055531_1000002956 319
11 3300025304 Ga0209257_1000013 Ga0209257_1000013689 319
12 3300048927 Ga0496124_0017812 Ga0496124_0017812_392_1366 320
13 3300048928 Ga0496125_0057258 Ga0496125_0057258_1749_2723 320
14 iso_pu_bacteria 2904780799 2904780836 322
15 iso_pu_bacteria 2946787523 2946788428 324
16 3300046507 Ga0495606_0041904 Ga0495606_0041904_1862_2869 325
17 3300003323 rootH1_10027584 rootH1_100275844 326
18 3300005563 Ga0068855_100032188 Ga0068855_1000321888 326
19 3300005577 Ga0068857_100124593 Ga0068857_1001245932 326
20 3300005614 Ga0068856_100071449 Ga0068856_1000714492 326
21 3300025949 Ga0207667_10019043 Ga0207667_100190434 326
22 3300026116 Ga0207674_10052996 Ga0207674_100529963 326
23 3300046513 Ga0495616_0021216 Ga0495616_0021216_823_1812 326
24 3300046694 Ga0495649_0160865 Ga0495649_0160865_118_1137 326
25 iso_pu_bacteria 2519899754 2520879127 327
26 iso_pu_bacteria 2816332280 2817416108 327
27 iso_pu_bacteria 2818991444 2819590873 327
28 iso_pu_bacteria 2857613821 2857617408 327
29 iso_pu_bacteria 2881359912 2881362763 327
30 iso_pu_bacteria 2903895155 2903897127 327
31 iso_pu_bacteria 2904419702 2904420685 327
32 3300039450 Ga0436363_1096900 Ga0436363_1096900_519_1511 328
33 3300044656 Ga0466969_0000282 Ga0466969_0000282_5537_6616 328
34 3300044684 Ga0466966_0000147 Ga0466966_0000147_13042_14121 328
35 iso_pu_bacteria 2643221667 2644369700 328
36 iso_pu_bacteria 2643221725 2644685037 328
37 iso_pu_bacteria 2739367857 2740001959 328
38 iso_pu_bacteria 2739367858 2740006775 328
39 iso_pu_bacteria 2802428842 2802653959 328
40 iso_pu_bacteria 2839989709 2839991068 328
41 iso_pu_bacteria 2852623160 2852623935 328
42 iso_pu_bacteria 2857618242 2857618829 328
43 iso_pu_bacteria 2884791551 2884797557 328
44 iso_pu_bacteria 2884933994 2884937162 328
45 iso_pu_bacteria 2910245624 2910247221 328
46 iso_pu_bacteria 2919177583 2919180700 328
47 iso_pu_bacteria 2919191525 2919196161 328
48 iso_pu_bacteria 2919683626 2919686708 328
49 iso_pu_bacteria 2929150217 2929153221 328
50 iso_pu_bacteria 2929154850 2929159084 328
51 iso_pu_bacteria 2958512119 2958513649 328
52 iso_pu_bacteria 2977268062 2977269931 328
53 3300005335 Ga0070666_10086888 Ga0070666_100868882 329
54 3300005614 Ga0068856_100016087 Ga0068856_1000160874 329
55 3300005843 Ga0068860_100000026 Ga0068860_100000026189 329
56 3300009545 Ga0105237_10197063 Ga0105237_101970632 329
57 3300009551 Ga0105238_10069590 Ga0105238_100695902 329
58 3300013306 Ga0163162_10022433 Ga0163162_100224333 329
59 3300025903 Ga0207680_10087162 Ga0207680_100871622 329
60 3300025924 Ga0207694_10047752 Ga0207694_100477522 329
61 3300026142 Ga0207698_10230007 Ga0207698_102300072 329
62 3300028381 Ga0268264_10000455 Ga0268264_1000045515 329
63 3300033180 Ga0307510_10013261 Ga0307510_100132612 329
64 3300044842 Ga0466957_0000508 Ga0466957_0000508_16582_17571 329
65 3300046511 Ga0495608_0063903 Ga0495608_0063903_20_1015 329
66 iso_pu_bacteria 2852627209 2852627400 329
67 iso_pu_bacteria 2977232053 2977234671 329
68 3300006942 Ga0099824_1007666 Ga0099824_10076664 330
69 3300006948 Ga0099826_10002174 Ga0099826_100021747 330
70 3300021384 Ga0213876_10114341 Ga0213876_101143412 330
71 3300032002 Ga0307416_100003013 Ga0307416_1000030133 330
72 3300045976 Ga0466967_0022376 Ga0466967_0022376_299_1312 330
73 3300046694 Ga0495649_0000162 Ga0495649_0000162_33301_34341 330
74 3300047323 Ga0495683_0000086 Ga0495683_0000086_38686_39690 330
75 3300003322 rootL2_10119913 rootL2_101199131 331
76 3300005288 Ga0065714_10003792 Ga0065714_100037921 331
77 3300005329 Ga0070683_100007863 Ga0070683_1000078637 331
78 3300005563 Ga0068855_100005014 Ga0068855_1000050142 331
79 3300005577 Ga0068857_100000360 Ga0068857_10000036012 331
80 3300005578 Ga0068854_100010704 Ga0068854_1000107042 331
81 3300005614 Ga0068856_100024278 Ga0068856_1000242783 331
82 3300005616 Ga0068852_100000427 Ga0068852_10000042712 331
83 3300006358 Ga0068871_100230344 Ga0068871_1002303442 331
84 3300009093 Ga0105240_10000520 Ga0105240_100005205 331
85 3300009093 Ga0105240_10010911 Ga0105240_100109119 331
86 3300009093 Ga0105240_10014745 Ga0105240_100147456 331
87 3300009174 Ga0105241_10000692 Ga0105241_100006922 331
88 3300009174 Ga0105241_10142161 Ga0105241_101421611 331
89 3300009545 Ga0105237_10000310 Ga0105237_100003102 331
90 3300009545 Ga0105237_10000830 Ga0105237_1000083015 331
91 3300009545 Ga0105237_10010168 Ga0105237_100101684 331
92 3300009551 Ga0105238_10002208 Ga0105238_1000220810 331
93 3300009551 Ga0105238_10018843 Ga0105238_100188435 331
94 3300010375 Ga0105239_10061155 Ga0105239_100611553 331
95 3300013100 Ga0157373_10000002 Ga0157373_10000002260 331
96 3300013100 Ga0157373_10000072 Ga0157373_1000007258 331
97 3300013104 Ga0157370_10000097 Ga0157370_1000009763 331
98 3300013104 Ga0157370_10031347 Ga0157370_100313475 331
99 3300013104 Ga0157370_10071798 Ga0157370_100717982 331
100 3300013105 Ga0157369_10170964 Ga0157369_101709643 331
101 3300013105 Ga0157369_10323252 Ga0157369_103232522 331
102 3300013307 Ga0157372_10001086 Ga0157372_1000108611 331
103 3300015261 Ga0182006_1003218 Ga0182006_10032184 331
104 3300015261 Ga0182006_1004034 Ga0182006_10040346 331
105 3300025304 Ga0209257_1000005 Ga0209257_10000051170 331
106 3300025904 Ga0207647_10018760 Ga0207647_100187602 331
107 3300025911 Ga0207654_10001582 Ga0207654_100015825 331
108 3300025913 Ga0207695_10001716 Ga0207695_1000171620 331
109 3300025913 Ga0207695_10002400 Ga0207695_100024006 331
110 3300025913 Ga0207695_10012734 Ga0207695_100127342 331
111 3300025913 Ga0207695_10228263 Ga0207695_102282632 331
112 3300025914 Ga0207671_10000366 Ga0207671_1000036663 331
113 3300025914 Ga0207671_10000609 Ga0207671_1000060926 331
114 3300025914 Ga0207671_10005122 Ga0207671_100051228 331
115 3300025924 Ga0207694_10012064 Ga0207694_100120646 331
116 3300025924 Ga0207694_10157752 Ga0207694_101577522 331
117 3300025949 Ga0207667_10000519 Ga0207667_100005192 331
118 3300026041 Ga0207639_10037458 Ga0207639_100374585 331
119 3300026078 Ga0207702_10017634 Ga0207702_100176343 331
120 3300026078 Ga0207702_10091085 Ga0207702_100910854 331
121 3300026116 Ga0207674_10001621 Ga0207674_100016213 331
122 3300026142 Ga0207698_10001833 Ga0207698_100018332 331
123 3300031251 Ga0265327_10121544 Ga0265327_101215441 331
124 3300031852 Ga0307410_10000731 Ga0307410_1000073115 331
125 3300031911 Ga0307412_10122701 Ga0307412_101227013 331
126 3300032004 Ga0307414_10000002 Ga0307414_1000000272 331
127 3300032004 Ga0307414_10075259 Ga0307414_100752596 331
128 3300032004 Ga0307414_10229598 Ga0307414_102295981 331
129 3300032005 Ga0307411_10000001 Ga0307411_1000000181 331
130 3300032005 Ga0307411_10230826 Ga0307411_102308261 331
131 3300037312 Ga0395899_0000002 Ga0395899_0000002_869381_870388 331
132 3300037418 Ga0395900_0001195 Ga0395900_0001195_27234_28241 331
133 3300037418 Ga0395900_0146021 Ga0395900_0146021_895_1902 331
134 3300037471 Ga0395905_0000208 Ga0395905_0000208_76596_77621 331
135 3300038443 Ga0395901_0152417 Ga0395901_0152417_1155_2330 331
136 3300041512 Ga0451853_0010659 Ga0451853_0010659_1024_2031 331
137 3300044658 Ga0466972_0004670 Ga0466972_0004670_3341_4342 331
138 3300044684 Ga0466966_0137607 Ga0466966_0137607_138_1145 331
139 3300044735 Ga0466968_0060548 Ga0466968_0060548_176_1177 331
140 3300045049 Ga0466959_0000003 Ga0466959_0000003_197818_198897 331
141 3300046463 Ga0495653_0000119 Ga0495653_0000119_37117_38124 331
142 3300046471 Ga0495650_0000036 Ga0495650_0000036_156714_157721 331
143 3300046500 Ga0495596_0005721 Ga0495596_0005721_3246_4253 331
144 3300046501 Ga0495607_0000843 Ga0495607_0000843_11582_12589 331
145 3300046507 Ga0495606_0011892 Ga0495606_0011892_1465_2475 331
146 3300046507 Ga0495606_0021180 Ga0495606_0021180_1221_2228 331
147 3300046507 Ga0495606_0073192 Ga0495606_0073192_825_1832 331
148 3300046512 Ga0495610_0020378 Ga0495610_0020378_1344_2351 331
149 3300046518 Ga0495631_0001726 Ga0495631_0001726_5095_6102 331
150 3300046522 Ga0495643_0001434 Ga0495643_0001434_14751_15758 331
151 3300046660 Ga0495625_0000893 Ga0495625_0000893_21006_22007 331
152 3300046660 Ga0495625_0129539 Ga0495625_0129539_222_1229 331
153 3300046665 Ga0495661_0001060 Ga0495661_0001060_17798_18805 331
154 3300046665 Ga0495661_0050190 Ga0495661_0050190_827_1834 331
155 3300046665 Ga0495661_0076386 Ga0495661_0076386_369_1376 331
156 3300046810 Ga0495660_0057827 Ga0495660_0057827_616_1626 331
157 3300047472 Ga0495686_0000274 Ga0495686_0000274_4178_5185 331
158 3300047472 Ga0495686_0000298 Ga0495686_0000298_24963_25970 331
159 3300047472 Ga0495686_0108928 Ga0495686_0108928_479_1486 331
160 3300048918 Ga0496115_0097667 Ga0496115_0097667_443_1447 331
161 3300048924 Ga0496121_0123738 Ga0496121_0123738_747_1751 331
162 3300049571 Ga0501034_0186112 Ga0501034_0186112_33_1046 331
163 3300049679 Ga0501249_000824 Ga0501249_000824_3609_4613 331
164 3300049763 Ga0501266_000014 Ga0501266_000014_47211_48215 331
165 3300049776 Ga0501280_000332 Ga0501280_000332_5443_6444 331
166 3300050493 nmdc:mga0k408_150_c1 nmdc:mga0k408_150_c1_33938_34939 331
167 3300053096 Ga0500641_0039761 Ga0500641_0039761_768_1778 331

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13561

adh_short_C2

Enoyl-(Acyl carrier protein) reductase

153

389

0.96

PF00106

adh_short

short chain dehydrogenase

147

342

0.94

PF08659

KR

KR domain

148

331

0.87

Structural Annotation

Top 5 Hits

ID Description Score Start End
5u8p-assembly1.cif.gz_A crystal structure of a short chain dehydrogenase from burkholderia cenocepacia j2315 in complex with nad 0.9916 41 327
3r3s-assembly1.cif.gz_D structure of the ygha oxidoreductase from salmonella enterica 0.9845 41 331
3r3s-assembly1.cif.gz_D structure of the ygha oxidoreductase from salmonella enterica 0.9778 41 331
3i3o-assembly2.cif.gz_H 2.06 angstrom resolution crystal structure of a short chain dehydrogenase from bacillus anthracis str. 'ames ancestor' in complex with nad-acetone 0.9777 57 327
3i3o-assembly2.cif.gz_G 2.06 angstrom resolution crystal structure of a short chain dehydrogenase from bacillus anthracis str. 'ames ancestor' in complex with nad-acetone 0.9757 71 327
ID Description Score Start End Superfamily
3r3sA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9855 41 331 3.40.50.720
3r3sA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9788 41 331 3.40.50.720
3i3oG00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9757 71 327 3.40.50.720
af_K7KGR3_30_220_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9712 149 327 3.40.50.720
af_Q75KH3_1_297_3.40.50.720 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.9539 50 327 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A418IZU3-F1-model_v4 deleted 0.9867 136 265
AF-X6K9W2-F1-model_v4 Dehydrogenase 0.9822 39 145 GO:0016614
AF-A0A519T453-F1-model_v4 SDR family oxidoreductase 0.981 76 327 GO:0016614
AF-A0A418IZU3-F1-model_v4 deleted 0.9792 136 265
AF-A0A4Q5VLK3-F1-model_v4 deleted 0.9762 169 327

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pLDDT pTM Quality
87.25 0.84 High
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Predicted Structure (AlphaFold2)

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