F250774
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 167 | 126 | 165 | 190 |
Family's Representative Sequence
| Representative Sequence | 3300031235|Ga0265330_10082224|Ga0265330_100822241 |
| Length | 225 |
| Sequence | MAKEKVERKPKGEKETPDAKGKKVVAGAQEKGVPARLALRYKSDVIPALSKKFQYSSVMQVPKLEKISINIGVGVATQDPKLLDAAVRDLEAITGQKVAVTKSKKAISNFKLREHLPIGCRVTLRREKMYEFLDRFVSVALPRVRDFRGVSDKSFDGHGNYTLGVKEQIIFPEIDVDKVTRITGMDVTFVTTAMTDLEAYELLKELGIPFVKREEVVPSTTQPVR |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 2738541278 | Niastella sp. CF465 | Isolate | Unclassified |
| 2 | 2914759650 | Rhizosphaericola mali | Isolate | Rhizosphere |
| 3 | 3300003320 | Sugarcane root Sample H2 | Metagenome | Unclassified |
| 4 | 3300003322 | Sugarcane root Sample L2 | Metagenome | Unclassified |
| 5 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 6 | 3300005262 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) | Metagenome | Endosphere |
| 7 | 3300005330 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG | Metagenome | Rhizosphere |
| 8 | 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Metagenome | Rhizosphere |
| 9 | 3300005333 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG | Metagenome | Rhizosphere |
| 10 | 3300005335 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG | Metagenome | Rhizosphere |
| 11 | 3300005338 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 | Metagenome | Rhizosphere |
| 12 | 3300005340 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG | Metagenome | Rhizosphere |
| 13 | 3300005343 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG | Metagenome | Rhizosphere |
| 14 | 3300005344 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG | Metagenome | Rhizosphere |
| 15 | 3300005353 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG | Metagenome | Rhizosphere |
| 16 | 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Metagenome | Rhizosphere |
| 17 | 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Metagenome | Rhizosphere |
| 18 | 3300005356 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG | Metagenome | Rhizosphere |
| 19 | 3300005365 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG | Metagenome | Rhizosphere |
| 20 | 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Metagenome | Rhizosphere |
| 21 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 22 | 3300005438 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG | Metagenome | Rhizosphere |
| 23 | 3300005445 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG | Metagenome | Rhizosphere |
| 24 | 3300005456 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG | Metagenome | Rhizosphere |
| 25 | 3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Metagenome | Rhizosphere |
| 26 | 3300005536 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG | Metagenome | Rhizosphere |
| 27 | 3300005543 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG | Metagenome | Rhizosphere |
| 28 | 3300005544 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG | Metagenome | Rhizosphere |
| 29 | 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Metagenome | Rhizosphere |
| 30 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 31 | 3300005615 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG | Metagenome | Rhizosphere |
| 32 | 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Metagenome | Rhizosphere |
| 33 | 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Metagenome | Rhizosphere |
| 34 | 3300005718 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 | Metagenome | Rhizosphere |
| 35 | 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Metagenome | Rhizosphere |
| 36 | 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Metagenome | Rhizosphere |
| 37 | 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 38 | 3300006353 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 | Metagenome | Endosphere |
| 39 | 3300006914 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 | Metagenome | Rhizosphere |
| 40 | 3300006931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 41 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 42 | 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Metagenome | Rhizosphere |
| 43 | 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Metagenome | Rhizosphere |
| 44 | 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Metagenome | Rhizosphere |
| 45 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 46 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 47 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 48 | 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Metagenome | Rhizosphere |
| 49 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 50 | 3300014745 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG | Metagenome | Rhizosphere |
| 51 | 3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Metagenome | Rhizosphere |
| 52 | 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Metagenome | Rhizosphere |
| 53 | 3300025899 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 54 | 3300025901 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 55 | 3300025903 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 56 | 3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 57 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 58 | 3300025918 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 59 | 3300025922 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 60 | 3300025923 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 61 | 3300025925 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 62 | 3300025927 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 63 | 3300025928 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 64 | 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 65 | 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 66 | 3300025934 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 67 | 3300025936 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 68 | 3300025940 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 69 | 3300025945 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 70 | 3300025981 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 71 | 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 72 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 73 | 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 74 | 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 75 | 3300026121 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 76 | 3300026142 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 77 | 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 78 | 3300028556 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG | Metagenome | Rhizosphere |
| 79 | 3300028558 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG | Metagenome | Rhizosphere |
| 80 | 3300028563 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG | Metagenome | Rhizosphere |
| 81 | 3300028577 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG | Metagenome | Rhizosphere |
| 82 | 3300028653 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG | Metagenome | Rhizosphere |
| 83 | 3300028800 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG | Metagenome | Rhizosphere |
| 84 | 3300029957 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG | Metagenome | Rhizosphere |
| 85 | 3300031235 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG | Metagenome | Rhizosphere |
| 86 | 3300031240 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG | Metagenome | Rhizosphere |
| 87 | 3300031241 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG | Metagenome | Rhizosphere |
| 88 | 3300031249 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG | Metagenome | Rhizosphere |
| 89 | 3300031595 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG | Metagenome | Rhizosphere |
| 90 | 3300031711 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG | Metagenome | Rhizosphere |
| 91 | 3300031727 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 | Metagenome | Rhizosphere |
| 92 | 3300032168 | Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 93 | 3300033524 | Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 94 | 3300033528 | Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 95 | 3300033541 | Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 96 | 3300036647 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA | Metagenome | Rhizosphere |
| 97 | 3300036712 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA | Metagenome | Rhizosphere |
| 98 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 99 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 100 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 101 | 3300041511 | White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_12 MetaG | Metagenome | Unclassified |
| 102 | 3300042876 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED | Metagenome | Rhizosphere |
| 103 | 3300044673 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED | Metagenome | Rhizosphere |
| 104 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 105 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 106 | 3300049161 | Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I2_A_0_drought (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 107 | 3300049528 | Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 108 | 3300049530 | Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F4_A_2_drought (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 109 | 3300049531 | Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 110 | 3300049541 | Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F14_A_4_drought (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 111 | 3300049550 | Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I22_A_5_control (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 112 | 3300049551 | Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 113 | 3300049576 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 114 | 3300049673 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I13_A_3_drought | Metagenome | Rhizosphere |
| 115 | 3300049705 | Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought | Metagenome | Rhizosphere |
| 116 | 3300050493 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation | Metagenome | Endosphere |
| 117 | 3300053090 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere | Metagenome | Endosphere |
| 118 | 3300053139 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere | Metagenome | Endosphere |
| 119 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 120 | 3300059506 | Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 52R_CW_T2_R2 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 121 | 3300059511 | Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 56R_CD_T2_R4 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 122 | 3300059605 | Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 71R_SD_T2_R3 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 123 | 3300059639 | Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 3R_CW_T1_R3 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 124 | 3300059641 | Metatranscriptome of rhizosphere soil microbial communities from Hall's panicgrass in greenhouse, Berkeley, CA, USA - 9R_AW_T1_R1 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 125 | 3300060353 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 | Metagenome | Rhizosphere |
| 126 | 3300061719 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 | Metagenome | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 83.83 |
| Metatranscriptomes | 14.97 |
| Isolates | 1.2 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 3.59 |
| Nodule | 0 |
| Rhizoplane | 0 |
| Rhizosphere | 92.22 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 4.19 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | rootH2_10003970 | 3300003320 | Bacteria | 33753 |
| 2 | rootL2_10010167 | 3300003322 | Bacteria | 22542 |
| 3 | rootL2_10018413 | 3300003322 | Bacteria | 4388 |
| 4 | rootH1_10012094 | 3300003323 | Bacteria | 18730 |
| 5 | rootH1_10024020 | 3300003323 | Bacteria | 3194 |
| 6 | Ga0065165_1000831 | 3300005262 | Bacteria | 40595 |
| 7 | Ga0070690_100302210 | 3300005330 | Bacteria | 1148 |
| 8 | Ga0070670_100692246 | 3300005331 | Bacteria | 916 |
| 9 | Ga0070677_10039002 | 3300005333 | Bacteria | 1862 |
| 10 | Ga0070666_10144233 | 3300005335 | Bacteria | 1659 |
| 11 | Ga0068868_100013181 | 3300005338 | Bacteria | 6055 |
| 12 | Ga0070689_100081735 | 3300005340 | Bacteria | 2537 |
| 13 | Ga0070689_100833282 | 3300005340 | Bacteria | 813 |
| 14 | Ga0070687_100019156 | 3300005343 | Bacteria | 3180 |
| 15 | Ga0070661_100285472 | 3300005344 | Bacteria | 1281 |
| 16 | Ga0070669_100492382 | 3300005353 | Bacteria | 1016 |
| 17 | Ga0070675_100098544 | 3300005354 | Bacteria | 2459 |
| 18 | Ga0070671_100036529 | 3300005355 | Bacteria | 4074 |
| 19 | Ga0070674_100034632 | 3300005356 | Bacteria | 3374 |
| 20 | Ga0070688_100082653 | 3300005365 | Bacteria | 2082 |
| 21 | Ga0070667_100074036 | 3300005367 | Bacteria | 2905 |
| 22 | Ga0070667_100553951 | 3300005367 | Bacteria | 1057 |
| 23 | Ga0070714_100000411 | 3300005435 | Bacteria | 31485 |
| 24 | Ga0070701_10022246 | 3300005438 | Bacteria | 3037 |
| 25 | Ga0070708_100310833 | 3300005445 | Bacteria | 1484 |
| 26 | Ga0070678_100028263 | 3300005456 | Bacteria | 3822 |
| 27 | Ga0070706_100552327 | 3300005467 | Bacteria | 1071 |
| 28 | Ga0070697_100264337 | 3300005536 | Bacteria | 1474 |
| 29 | Ga0070672_100064827 | 3300005543 | Bacteria | 2888 |
| 30 | Ga0070672_100074297 | 3300005543 | Bacteria | 2711 |
| 31 | Ga0070686_100045091 | 3300005544 | Bacteria | 2776 |
| 32 | Ga0070664_100009616 | 3300005564 | Bacteria | 7841 |
| 33 | Ga0068856_100041208 | 3300005614 | Bacteria | 4537 |
| 34 | Ga0070702_100147331 | 3300005615 | Bacteria | 1507 |
| 35 | Ga0068859_100177373 | 3300005617 | Bacteria | 2213 |
| 36 | Ga0068864_100034196 | 3300005618 | Bacteria | 4322 |
| 37 | Ga0068866_10557006 | 3300005718 | Bacteria | 767 |
| 38 | Ga0068863_101083843 | 3300005841 | Bacteria | 805 |
| 39 | Ga0068858_100117482 | 3300005842 | Bacteria | 2486 |
| 40 | Ga0097621_100085435 | 3300006237 | Bacteria | 2632 |
| 41 | Ga0075370_10330285 | 3300006353 | Bacteria | 909 |
| 42 | Ga0075436_100558624 | 3300006914 | Bacteria | 841 |
| 43 | Ga0097620_100177382 | 3300006931 | Bacteria | 2213 |
| 44 | Ga0105240_10000078 | 3300009093 | Bacteria | 196646 |
| 45 | Ga0105245_10022092 | 3300009098 | Bacteria | 5586 |
| 46 | Ga0105242_10023758 | 3300009176 | Bacteria | 4835 |
| 47 | Ga0105242_10191217 | 3300009176 | Bacteria | 1812 |
| 48 | Ga0105249_11180404 | 3300009553 | Bacteria | 836 |
| 49 | Ga0105239_10000431 | 3300010375 | Bacteria | 61098 |
| 50 | Ga0157370_10429157 | 3300013104 | Bacteria | 1215 |
| 51 | Ga0157374_10116661 | 3300013296 | Bacteria | 2573 |
| 52 | Ga0157378_10019722 | 3300013297 | Bacteria | 5929 |
| 53 | Ga0157378_10205442 | 3300013297 | Bacteria | 1865 |
| 54 | Ga0163162_10255817 | 3300013306 | Bacteria | 1883 |
| 55 | Ga0157377_10089603 | 3300014745 | Bacteria | 1814 |
| 56 | Ga0157376_10185228 | 3300014969 | Bacteria | 1906 |
| 57 | Ga0157376_10968897 | 3300014969 | Bacteria | 872 |
| 58 | Ga0163161_10576143 | 3300017792 | Bacteria | 925 |
| 59 | Ga0207642_10121038 | 3300025899 | Bacteria | 1350 |
| 60 | Ga0207688_10056291 | 3300025901 | Bacteria | 2209 |
| 61 | Ga0207680_10238312 | 3300025903 | Bacteria | 1253 |
| 62 | Ga0207645_10068664 | 3300025907 | Bacteria | 2267 |
| 63 | Ga0207695_10000064 | 3300025913 | Bacteria | 346010 |
| 64 | Ga0207662_10007273 | 3300025918 | Bacteria | 6019 |
| 65 | Ga0207646_10018143 | 3300025922 | Bacteria | 6570 |
| 66 | Ga0207681_10182146 | 3300025923 | Bacteria | 1601 |
| 67 | Ga0207650_10611765 | 3300025925 | Bacteria | 917 |
| 68 | Ga0207687_10040627 | 3300025927 | Bacteria | 3189 |
| 69 | Ga0207700_10342217 | 3300025928 | Bacteria | 1301 |
| 70 | Ga0207664_10000099 | 3300025929 | Bacteria | 80206 |
| 71 | Ga0207644_10019521 | 3300025931 | Bacteria | 4599 |
| 72 | Ga0207686_10035366 | 3300025934 | Bacteria | 2998 |
| 73 | Ga0207670_10338581 | 3300025936 | Bacteria | 1188 |
| 74 | Ga0207691_10026678 | 3300025940 | Bacteria | 5420 |
| 75 | Ga0207679_10153477 | 3300025945 | Bacteria | 1877 |
| 76 | Ga0207640_10120279 | 3300025981 | Bacteria | 1880 |
| 77 | Ga0207658_10188422 | 3300025986 | Bacteria | 1713 |
| 78 | Ga0207702_10056100 | 3300026078 | Bacteria | 3343 |
| 79 | Ga0207641_10200693 | 3300026088 | Bacteria | 1839 |
| 80 | Ga0207676_10535204 | 3300026095 | Bacteria | 1117 |
| 81 | Ga0207683_10066421 | 3300026121 | Bacteria | 3180 |
| 82 | Ga0207683_10082904 | 3300026121 | Bacteria | 2849 |
| 83 | Ga0207698_10126063 | 3300026142 | Bacteria | 2178 |
| 84 | Ga0268264_10023921 | 3300028381 | Bacteria | 4984 |
| 85 | Ga0265337_1016686 | 3300028556 | Bacteria | 2368 |
| 86 | Ga0265326_10054192 | 3300028558 | Bacteria | 1135 |
| 87 | Ga0265319_1018269 | 3300028563 | Bacteria | 2644 |
| 88 | Ga0265318_10068893 | 3300028577 | Bacteria | 1312 |
| 89 | Ga0265323_10016707 | 3300028653 | Bacteria | 2859 |
| 90 | Ga0265323_10029970 | 3300028653 | Bacteria | 2031 |
| 91 | Ga0265323_10057406 | 3300028653 | Bacteria | 1362 |
| 92 | Ga0265338_10001977 | 3300028800 | Bacteria | 31927 |
| 93 | Ga0265338_10097186 | 3300028800 | Bacteria | 2414 |
| 94 | Ga0265324_10140357 | 3300029957 | Unclassified | 821 |
| 95 | Ga0265330_10001669 | 3300031235 | Bacteria | 12591 |
| 96 | Ga0265330_10082224 | 3300031235 | Bacteria | 1387 |
| 97 | Ga0265320_10021417 | 3300031240 | Bacteria | 3477 |
| 98 | Ga0265325_10016999 | 3300031241 | Bacteria | 4054 |
| 99 | Ga0265339_10016818 | 3300031249 | Bacteria | 4350 |
| 100 | Ga0265313_10019551 | 3300031595 | Bacteria | 3764 |
| 101 | Ga0265313_10115494 | 3300031595 | Bacteria | 1176 |
| 102 | Ga0265314_10077276 | 3300031711 | Bacteria | 2209 |
| 103 | Ga0316576_10038990 | 3300031727 | Bacteria | 3409 |
| 104 | Ga0316593_10002615 | 3300032168 | Bacteria | 4312 |
| 105 | Ga0316593_10028598 | 3300032168 | Bacteria | 1798 |
| 106 | Ga0316593_10037180 | 3300032168 | Bacteria | 1608 |
| 107 | Ga0316593_10066389 | 3300032168 | Bacteria | 1241 |
| 108 | Ga0316592_1000096 | 3300033524 | Bacteria | 8778 |
| 109 | Ga0316592_1036358 | 3300033524 | Bacteria | 1082 |
| 110 | Ga0316592_1042213 | 3300033524 | Bacteria | 1011 |
| 111 | Ga0316592_1062434 | 3300033524 | Bacteria | 837 |
| 112 | Ga0316588_1000079 | 3300033528 | Bacteria | 8548 |
| 113 | Ga0316596_1003008 | 3300033541 | Bacteria | 3660 |
| 114 | Ga0316596_1068122 | 3300033541 | Bacteria | 952 |
| 115 | Ga0316596_1077077 | 3300033541 | Unclassified | 895 |
| 116 | Ga0316582_0006683 | 3300036647 | Bacteria | 6083 |
| 117 | Ga0316582_0587059 | 3300036647 | Bacteria | 767 |
| 118 | Ga0316584_0132919 | 3300036712 | Bacteria | 1858 |
| 119 | Ga0395899_0000673 | 3300037312 | Bacteria | 34566 |
| 120 | Ga0395900_0254983 | 3300037418 | Bacteria | 1754 |
| 121 | Ga0395905_0000376 | 3300037471 | Bacteria | 63695 |
| 122 | Ga0451855_1297727 | 3300041511 | Bacteria | 630 |
| 123 | Ga0451577_0000139 | 3300042876 | Bacteria | 161883 |
| 124 | Ga0451577_0000255 | 3300042876 | Bacteria | 105353 |
| 125 | Ga0453683_0000392 | 3300044673 | Bacteria | 52154 |
| 126 | Ga0453683_0009862 | 3300044673 | Bacteria | 6363 |
| 127 | Ga0453683_0063843 | 3300044673 | Bacteria | 2302 |
| 128 | Ga0453684_0000024 | 3300044712 | Bacteria | 819351 |
| 129 | Ga0453684_0006155 | 3300044712 | Bacteria | 23081 |
| 130 | Ga0453684_0022851 | 3300044712 | Bacteria | 9256 |
| 131 | Ga0453684_0024744 | 3300044712 | Bacteria | 8753 |
| 132 | Ga0453684_0045668 | 3300044712 | Bacteria | 5838 |
| 133 | Ga0453684_0109782 | 3300044712 | Bacteria | 3354 |
| 134 | Ga0453684_0110811 | 3300044712 | Bacteria | 3335 |
| 135 | Ga0453684_0169329 | 3300044712 | Bacteria | 2576 |
| 136 | Ga0453684_0174513 | 3300044712 | Bacteria | 2530 |
| 137 | Ga0453684_0415683 | 3300044712 | Bacteria | 1503 |
| 138 | Ga0453684_0493679 | 3300044712 | Bacteria | 1356 |
| 139 | Ga0453684_0550915 | 3300044712 | Bacteria | 1270 |
| 140 | Ga0451576_0000971 | 3300045051 | Bacteria | 53521 |
| 141 | Ga0451576_0002988 | 3300045051 | Bacteria | 23949 |
| 142 | Ga0451576_0090655 | 3300045051 | Bacteria | 3180 |
| 143 | Ga0451576_0139594 | 3300045051 | Bacteria | 2527 |
| 144 | Ga0501305_009119 | 3300049161 | Bacteria | 1298 |
| 145 | Ga0501312_000178 | 3300049528 | Bacteria | 4285 |
| 146 | Ga0501314_018830 | 3300049530 | Bacteria | 705 |
| 147 | Ga0501315_031942 | 3300049531 | Bacteria | 763 |
| 148 | Ga0501325_022593 | 3300049541 | Bacteria | 673 |
| 149 | Ga0501334_03450 | 3300049550 | Bacteria | 979 |
| 150 | Ga0501335_004654 | 3300049551 | Bacteria | 1205 |
| 151 | Ga0501040_0160571 | 3300049576 | Bacteria | 1589 |
| 152 | Ga0501240_001254 | 3300049673 | Bacteria | 2425 |
| 153 | Ga0501225_0021517 | 3300049705 | Bacteria | 1781 |
| 154 | nmdc:mga0k408_68241_c1 | 3300050493 | Bacteria | 2074 |
| 155 | Ga0500646_0071675 | 3300053090 | Bacteria | 1040 |
| 156 | Ga0500568_0101904 | 3300053139 | Bacteria | 1076 |
| 157 | Ga0500622_0007455 | 3300053156 | Bacteria | 6212 |
| 158 | Ga0587085_039828 | 3300059506 | Bacteria | 814 |
| 159 | Ga0587091_004777 | 3300059511 | Bacteria | 1804 |
| 160 | Ga0587091_006010 | 3300059511 | Bacteria | 1683 |
| 161 | Ga0587106_002254 | 3300059605 | Bacteria | 1864 |
| 162 | Ga0587062_009363 | 3300059639 | Bacteria | 1192 |
| 163 | Ga0587068_001506 | 3300059641 | Bacteria | 2637 |
| 164 | Ga0501082_0758293 | 3300060353 | Bacteria | 849 |
| 165 | Ga0466962_0053031 | 3300061719 | Bacteria | 1938 |
Family Sequences
| Sample | Scaffold | Protein | Protein Length | |
|---|---|---|---|---|
| 1 | 3300042876 | Ga0451577_0000255 | Ga0451577_0000255_81520_82152 | 162 |
| 2 | 3300044712 | Ga0453684_0000024 | Ga0453684_0000024_294874_295506 | 162 |
| 3 | 3300033524 | Ga0316592_1000096 | Ga0316592_10000963 | 179 |
| 4 | 3300033524 | Ga0316592_1042213 | Ga0316592_10422132 | 179 |
| 5 | 3300033541 | Ga0316596_1068122 | Ga0316596_10681221 | 179 |
| 6 | 3300044712 | Ga0453684_0006155 | Ga0453684_0006155_3479_4030 | 179 |
| 7 | 3300044712 | Ga0453684_0109782 | Ga0453684_0109782_1655_2206 | 179 |
| 8 | 3300044712 | Ga0453684_0110811 | Ga0453684_0110811_2120_2671 | 179 |
| 9 | 3300045051 | Ga0451576_0139594 | Ga0451576_0139594_168_719 | 179 |
| 10 | 3300049576 | Ga0501040_0160571 | Ga0501040_0160571_492_1034 | 179 |
| 11 | 3300060353 | Ga0501082_0758293 | Ga0501082_0758293_68_610 | 179 |
| 12 | 3300028558 | Ga0265326_10054192 | Ga0265326_100541923 | 180 |
| 13 | 3300028563 | Ga0265319_1018269 | Ga0265319_10182695 | 180 |
| 14 | 3300028577 | Ga0265318_10068893 | Ga0265318_100688933 | 180 |
| 15 | 3300028800 | Ga0265338_10097186 | Ga0265338_100971864 | 180 |
| 16 | 3300029957 | Ga0265324_10140357 | Ga0265324_101403572 | 180 |
| 17 | 3300031240 | Ga0265320_10021417 | Ga0265320_100214177 | 180 |
| 18 | 3300031595 | Ga0265313_10115494 | Ga0265313_101154942 | 180 |
| 19 | 3300031711 | Ga0265314_10077276 | Ga0265314_100772762 | 180 |
| 20 | 3300032168 | Ga0316593_10002615 | Ga0316593_100026156 | 180 |
| 21 | 3300032168 | Ga0316593_10037180 | Ga0316593_100371802 | 180 |
| 22 | 3300041511 | Ga0451855_1297727 | Ga0451855_1297727_66_608 | 180 |
| 23 | 3300005445 | Ga0070708_100310833 | Ga0070708_1003108331 | 181 |
| 24 | 3300006914 | Ga0075436_100558624 | Ga0075436_1005586241 | 181 |
| 25 | 3300025922 | Ga0207646_10018143 | Ga0207646_100181436 | 181 |
| 26 | 3300031235 | Ga0265330_10001669 | Ga0265330_100016698 | 181 |
| 27 | 3300031249 | Ga0265339_10016818 | Ga0265339_100168188 | 181 |
| 28 | 3300031727 | Ga0316576_10038990 | Ga0316576_100389908 | 181 |
| 29 | 3300032168 | Ga0316593_10028598 | Ga0316593_100285982 | 181 |
| 30 | 3300032168 | Ga0316593_10066389 | Ga0316593_100663892 | 181 |
| 31 | 3300033524 | Ga0316592_1036358 | Ga0316592_10363582 | 181 |
| 32 | 3300033528 | Ga0316588_1000079 | Ga0316588_100007912 | 181 |
| 33 | 3300033541 | Ga0316596_1003008 | Ga0316596_10030084 | 181 |
| 34 | 3300036647 | Ga0316582_0587059 | Ga0316582_0587059_102_647 | 181 |
| 35 | 3300036712 | Ga0316584_0132919 | Ga0316584_0132919_548_1093 | 181 |
| 36 | 3300037312 | Ga0395899_0000673 | Ga0395899_0000673_19335_19892 | 181 |
| 37 | 3300037418 | Ga0395900_0254983 | Ga0395900_0254983_470_1027 | 181 |
| 38 | 3300037471 | Ga0395905_0000376 | Ga0395905_0000376_26726_27283 | 181 |
| 39 | 3300042876 | Ga0451577_0000139 | Ga0451577_0000139_148942_149502 | 181 |
| 40 | 3300044673 | Ga0453683_0000392 | Ga0453683_0000392_49595_50155 | 181 |
| 41 | 3300044673 | Ga0453683_0009862 | Ga0453683_0009862_1949_2653 | 181 |
| 42 | 3300044673 | Ga0453683_0063843 | Ga0453683_0063843_1350_1991 | 181 |
| 43 | 3300044712 | Ga0453684_0022851 | Ga0453684_0022851_8203_8874 | 181 |
| 44 | 3300044712 | Ga0453684_0024744 | Ga0453684_0024744_7672_8328 | 181 |
| 45 | 3300044712 | Ga0453684_0045668 | Ga0453684_0045668_2392_2952 | 181 |
| 46 | 3300044712 | Ga0453684_0169329 | Ga0453684_0169329_1591_2160 | 181 |
| 47 | 3300044712 | Ga0453684_0174513 | Ga0453684_0174513_1956_2510 | 181 |
| 48 | 3300044712 | Ga0453684_0415683 | Ga0453684_0415683_507_1178 | 181 |
| 49 | 3300044712 | Ga0453684_0493679 | Ga0453684_0493679_768_1328 | 181 |
| 50 | 3300044712 | Ga0453684_0550915 | Ga0453684_0550915_288_953 | 181 |
| 51 | 3300045051 | Ga0451576_0000971 | Ga0451576_0000971_9051_9713 | 181 |
| 52 | 3300045051 | Ga0451576_0002988 | Ga0451576_0002988_4694_5254 | 181 |
| 53 | 3300045051 | Ga0451576_0090655 | Ga0451576_0090655_131_793 | 181 |
| 54 | 3300059506 | Ga0587085_039828 | Ga0587085_039828_138_683 | 181 |
| 55 | 3300059511 | Ga0587091_006010 | Ga0587091_006010_1002_1547 | 181 |
| 56 | 3300059639 | Ga0587062_009363 | Ga0587062_009363_537_1082 | 181 |
| 57 | iso_pu_bacteria | 2738541278 | 2738726211 | 181 |
| 58 | iso_pu_bacteria | 2914759650 | 2914763473 | 181 |
| 59 | 3300005536 | Ga0070697_100264337 | Ga0070697_1002643372 | 182 |
| 60 | 3300009176 | Ga0105242_10023758 | Ga0105242_100237586 | 182 |
| 61 | 3300036647 | Ga0316582_0006683 | Ga0316582_0006683_3402_3962 | 182 |
| 62 | 3300049530 | Ga0501314_018830 | Ga0501314_018830_12_560 | 182 |
| 63 | 3300049541 | Ga0501325_022593 | Ga0501325_022593_10_558 | 182 |
| 64 | 3300059511 | Ga0587091_004777 | Ga0587091_004777_163_717 | 182 |
| 65 | 3300059605 | Ga0587106_002254 | Ga0587106_002254_1156_1710 | 182 |
| 66 | 3300003320 | rootH2_10003970 | rootH2_1000397013 | 183 |
| 67 | 3300003322 | rootL2_10010167 | rootL2_1001016715 | 183 |
| 68 | 3300003322 | rootL2_10018413 | rootL2_100184133 | 183 |
| 69 | 3300003323 | rootH1_10012094 | rootH1_1001209410 | 183 |
| 70 | 3300003323 | rootH1_10024020 | rootH1_100240204 | 183 |
| 71 | 3300005262 | Ga0065165_1000831 | Ga0065165_100083137 | 183 |
| 72 | 3300005330 | Ga0070690_100302210 | Ga0070690_1003022101 | 183 |
| 73 | 3300005331 | Ga0070670_100692246 | Ga0070670_1006922461 | 183 |
| 74 | 3300005333 | Ga0070677_10039002 | Ga0070677_100390021 | 183 |
| 75 | 3300005335 | Ga0070666_10144233 | Ga0070666_101442333 | 183 |
| 76 | 3300005338 | Ga0068868_100013181 | Ga0068868_1000131819 | 183 |
| 77 | 3300005340 | Ga0070689_100081735 | Ga0070689_1000817352 | 183 |
| 78 | 3300005340 | Ga0070689_100833282 | Ga0070689_1008332822 | 183 |
| 79 | 3300005343 | Ga0070687_100019156 | Ga0070687_1000191565 | 183 |
| 80 | 3300005344 | Ga0070661_100285472 | Ga0070661_1002854721 | 183 |
| 81 | 3300005353 | Ga0070669_100492382 | Ga0070669_1004923822 | 183 |
| 82 | 3300005354 | Ga0070675_100098544 | Ga0070675_1000985443 | 183 |
| 83 | 3300005355 | Ga0070671_100036529 | Ga0070671_1000365296 | 183 |
| 84 | 3300005356 | Ga0070674_100034632 | Ga0070674_1000346325 | 183 |
| 85 | 3300005365 | Ga0070688_100082653 | Ga0070688_1000826533 | 183 |
| 86 | 3300005367 | Ga0070667_100074036 | Ga0070667_1000740364 | 183 |
| 87 | 3300005367 | Ga0070667_100553951 | Ga0070667_1005539512 | 183 |
| 88 | 3300005435 | Ga0070714_100000411 | Ga0070714_10000041127 | 183 |
| 89 | 3300005438 | Ga0070701_10022246 | Ga0070701_100222465 | 183 |
| 90 | 3300005456 | Ga0070678_100028263 | Ga0070678_1000282638 | 183 |
| 91 | 3300005467 | Ga0070706_100552327 | Ga0070706_1005523272 | 183 |
| 92 | 3300005543 | Ga0070672_100064827 | Ga0070672_1000648272 | 183 |
| 93 | 3300005543 | Ga0070672_100074297 | Ga0070672_1000742973 | 183 |
| 94 | 3300005544 | Ga0070686_100045091 | Ga0070686_1000450913 | 183 |
| 95 | 3300005564 | Ga0070664_100009616 | Ga0070664_10000961610 | 183 |
| 96 | 3300005614 | Ga0068856_100041208 | Ga0068856_10004120810 | 183 |
| 97 | 3300005615 | Ga0070702_100147331 | Ga0070702_1001473313 | 183 |
| 98 | 3300005617 | Ga0068859_100177373 | Ga0068859_1001773735 | 183 |
| 99 | 3300005618 | Ga0068864_100034196 | Ga0068864_1000341964 | 183 |
| 100 | 3300005718 | Ga0068866_10557006 | Ga0068866_105570062 | 183 |
| 101 | 3300005841 | Ga0068863_101083843 | Ga0068863_1010838431 | 183 |
| 102 | 3300005842 | Ga0068858_100117482 | Ga0068858_1001174824 | 183 |
| 103 | 3300006237 | Ga0097621_100085435 | Ga0097621_1000854353 | 183 |
| 104 | 3300006353 | Ga0075370_10330285 | Ga0075370_103302852 | 183 |
| 105 | 3300006931 | Ga0097620_100177382 | Ga0097620_1001773821 | 183 |
| 106 | 3300009093 | Ga0105240_10000078 | Ga0105240_1000007886 | 183 |
| 107 | 3300009098 | Ga0105245_10022092 | Ga0105245_100220929 | 183 |
| 108 | 3300009176 | Ga0105242_10191217 | Ga0105242_101912173 | 183 |
| 109 | 3300009553 | Ga0105249_11180404 | Ga0105249_111804041 | 183 |
| 110 | 3300010375 | Ga0105239_10000431 | Ga0105239_1000043110 | 183 |
| 111 | 3300013104 | Ga0157370_10429157 | Ga0157370_104291573 | 183 |
| 112 | 3300013296 | Ga0157374_10116661 | Ga0157374_101166615 | 183 |
| 113 | 3300013297 | Ga0157378_10019722 | Ga0157378_100197227 | 183 |
| 114 | 3300013297 | Ga0157378_10205442 | Ga0157378_102054422 | 183 |
| 115 | 3300013306 | Ga0163162_10255817 | Ga0163162_102558174 | 183 |
| 116 | 3300014745 | Ga0157377_10089603 | Ga0157377_100896034 | 183 |
| 117 | 3300014969 | Ga0157376_10185228 | Ga0157376_101852283 | 183 |
| 118 | 3300014969 | Ga0157376_10968897 | Ga0157376_109688971 | 183 |
| 119 | 3300017792 | Ga0163161_10576143 | Ga0163161_105761431 | 183 |
| 120 | 3300025899 | Ga0207642_10121038 | Ga0207642_101210383 | 183 |
| 121 | 3300025901 | Ga0207688_10056291 | Ga0207688_100562913 | 183 |
| 122 | 3300025903 | Ga0207680_10238312 | Ga0207680_102383121 | 183 |
| 123 | 3300025907 | Ga0207645_10068664 | Ga0207645_100686645 | 183 |
| 124 | 3300025913 | Ga0207695_10000064 | Ga0207695_10000064117 | 183 |
| 125 | 3300025918 | Ga0207662_10007273 | Ga0207662_100072737 | 183 |
| 126 | 3300025923 | Ga0207681_10182146 | Ga0207681_101821464 | 183 |
| 127 | 3300025925 | Ga0207650_10611765 | Ga0207650_106117651 | 183 |
| 128 | 3300025927 | Ga0207687_10040627 | Ga0207687_100406275 | 183 |
| 129 | 3300025928 | Ga0207700_10342217 | Ga0207700_103422171 | 183 |
| 130 | 3300025929 | Ga0207664_10000099 | Ga0207664_1000009913 | 183 |
| 131 | 3300025931 | Ga0207644_10019521 | Ga0207644_100195214 | 183 |
| 132 | 3300025934 | Ga0207686_10035366 | Ga0207686_100353666 | 183 |
| 133 | 3300025936 | Ga0207670_10338581 | Ga0207670_103385813 | 183 |
| 134 | 3300025940 | Ga0207691_10026678 | Ga0207691_1002667810 | 183 |
| 135 | 3300025945 | Ga0207679_10153477 | Ga0207679_101534773 | 183 |
| 136 | 3300025981 | Ga0207640_10120279 | Ga0207640_101202792 | 183 |
| 137 | 3300025986 | Ga0207658_10188422 | Ga0207658_101884221 | 183 |
| 138 | 3300026078 | Ga0207702_10056100 | Ga0207702_100561006 | 183 |
| 139 | 3300026088 | Ga0207641_10200693 | Ga0207641_102006932 | 183 |
| 140 | 3300026095 | Ga0207676_10535204 | Ga0207676_105352042 | 183 |
| 141 | 3300026121 | Ga0207683_10066421 | Ga0207683_100664216 | 183 |
| 142 | 3300026121 | Ga0207683_10082904 | Ga0207683_100829047 | 183 |
| 143 | 3300026142 | Ga0207698_10126063 | Ga0207698_101260635 | 183 |
| 144 | 3300028381 | Ga0268264_10023921 | Ga0268264_100239213 | 183 |
| 145 | 3300028556 | Ga0265337_1016686 | Ga0265337_10166863 | 183 |
| 146 | 3300028653 | Ga0265323_10016707 | Ga0265323_100167072 | 183 |
| 147 | 3300028653 | Ga0265323_10029970 | Ga0265323_100299702 | 183 |
| 148 | 3300028653 | Ga0265323_10057406 | Ga0265323_100574062 | 183 |
| 149 | 3300028800 | Ga0265338_10001977 | Ga0265338_1000197721 | 183 |
| 150 | 3300031235 | Ga0265330_10082224 | Ga0265330_100822241 | 183 |
| 151 | 3300031241 | Ga0265325_10016999 | Ga0265325_100169993 | 183 |
| 152 | 3300031595 | Ga0265313_10019551 | Ga0265313_100195516 | 183 |
| 153 | 3300033524 | Ga0316592_1062434 | Ga0316592_10624342 | 183 |
| 154 | 3300033541 | Ga0316596_1077077 | Ga0316596_10770772 | 183 |
| 155 | 3300049161 | Ga0501305_009119 | Ga0501305_009119_30_608 | 183 |
| 156 | 3300049528 | Ga0501312_000178 | Ga0501312_000178_2217_2786 | 183 |
| 157 | 3300049531 | Ga0501315_031942 | Ga0501315_031942_14_583 | 183 |
| 158 | 3300049550 | Ga0501334_03450 | Ga0501334_03450_402_965 | 183 |
| 159 | 3300049551 | Ga0501335_004654 | Ga0501335_004654_57_620 | 183 |
| 160 | 3300049673 | Ga0501240_001254 | Ga0501240_001254_1733_2299 | 183 |
| 161 | 3300049705 | Ga0501225_0021517 | Ga0501225_0021517_422_991 | 183 |
| 162 | 3300050493 | nmdc:mga0k408_68241_c1 | nmdc:mga0k408_68241_c1_303_872 | 183 |
| 163 | 3300053090 | Ga0500646_0071675 | Ga0500646_0071675_128_691 | 183 |
| 164 | 3300053139 | Ga0500568_0101904 | Ga0500568_0101904_439_999 | 183 |
| 165 | 3300053156 | Ga0500622_0007455 | Ga0500622_0007455_260_817 | 183 |
| 166 | 3300059641 | Ga0587068_001506 | Ga0587068_001506_1760_2323 | 183 |
| 167 | 3300061719 | Ga0466962_0053031 | Ga0466962_0053031_184_762 | 183 |
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 5ns4-assembly1.cif.gz_A | crystal structures of cy3 cyanine fluorophores stacked onto the end of double-stranded rna | 0.9729 | 6 | 179 |
| 5ns4-assembly2.cif.gz_B | crystal structures of cy3 cyanine fluorophores stacked onto the end of double-stranded rna | 0.9651 | 6 | 179 |
| 8ceu-assembly1.cif.gz_f | retapamulin and capreomycin bound to the 50s subunit | 0.9564 | 5 | 179 |
| 7azo-assembly1.cif.gz_L5A | 70s thermus thermophilus ribosome with bound antibiotic lead seq-977 | 0.9552 | 5 | 181 |
| 6ore-assembly1.cif.gz_E | release complex 70s | 0.9523 | 5 | 179 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 4warF00 | Alpha Beta;2-Layer Sandwich;50s Ribosomal Protein L5; Chain: A,;Ribosomal protein L5 | 0.9488 | 5 | 179 | 3.30.1440.10 |
| 4warF00 | Alpha Beta;2-Layer Sandwich;50s Ribosomal Protein L5; Chain: A,;Ribosomal protein L5 | 0.9334 | 5 | 179 | 3.30.1440.10 |
| af_A0A1D8PHY2_119_286_3.30.1440.10 | Alpha Beta;2-Layer Sandwich;50s Ribosomal Protein L5; Chain: A,;Ribosomal protein L5 | 0.893 | 24 | 181 | 3.30.1440.10 |
| af_P36519_120_288_3.30.1440.10 | Alpha Beta;2-Layer Sandwich;50s Ribosomal Protein L5; Chain: A,;Ribosomal protein L5 | 0.8883 | 24 | 179 | 3.30.1440.10 |
| af_O14337_108_278_3.30.1440.10 | Alpha Beta;2-Layer Sandwich;50s Ribosomal Protein L5; Chain: A,;Ribosomal protein L5 | 0.8879 | 24 | 179 | 3.30.1440.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-F8KQ75-F1-model_v4 | 50S ribosomal protein L5 | 0.9844 | 6 | 124 |
GO:0003735
GO:0005840 GO:0006412 GO:1990904 |
| AF-A0A3B9SJT6-F1-model_v4 | 50S ribosomal protein L5 | 0.9837 | 3 | 118 |
GO:0003735
GO:0005840 GO:0006412 GO:1990904 |
| AF-A0A3N5JZE8-F1-model_v4 | 50S ribosomal protein L5 | 0.9822 | 2 | 130 |
GO:0003735
GO:0005840 GO:0006412 GO:1990904 |
| AF-A0A538PZ07-F1-model_v4 | 50S ribosomal protein L5 | 0.9788 | 4 | 125 |
GO:0003735
GO:0005840 GO:0006412 GO:1990904 |
| AF-A0A6B0WZ30-F1-model_v4 | 50S ribosomal protein L5 | 0.9787 | 5 | 130 |
GO:0003735
GO:0005840 GO:0006412 GO:1990904 |
Predicted Structure (AlphaFold2)
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