F250638

General Info

Members Datasets Scaffolds Average Seq Length
167 111 334 290

Family's Representative Sequence

Representative Sequence 3300025922|Ga0207646_10012963|Ga0207646_100129634
Length 328
Sequence VRTVSSGRGDRLGQPPGRFSGSGNAGGLMTESGLVIVDKSGGMTSHDVVARIRRLAGTRRVGHAGTLDPMATGVLVIGIEKATRLLGHLALTDKDYAATIRLGQSTVTDDADGEALPPADGAAEDAAAIGEQALRSALGEFVGKISQVPPRISAIKVDGQRAYRLTRSGATPELAARPVTITRLDLLAHRPAGDGLVDIDVAVTCSSGTYIRAIARDLGAALRTGGHLTALRRTRVGPYRVDDARTLDQLAGKFEFIPLAEAAAAAFGHLHLTAEQARLVSHGVRLPAAEAAGGAADAPVAAFGPDGSLTALLVEQDGEMRPLAVFVP

Samples

Sample ID Description Type Environment
1 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
5 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
6 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
7 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
8 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
9 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
10 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
11 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
12 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
13 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
14 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
15 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
16 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
17 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
18 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
19 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
20 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
21 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
22 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
23 3300020081 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-3 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
24 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
25 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
43 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
44 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
45 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
46 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
47 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
48 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
49 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
50 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
51 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
52 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
53 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
54 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
55 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
56 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
57 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
58 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
59 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
60 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
61 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
62 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
63 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
64 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
65 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
66 3300046615 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co3_27_48 rhizosphere Metagenome Rhizosphere
67 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
68 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
69 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
70 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
71 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
72 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
73 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
74 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
75 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
76 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
77 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
78 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
79 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
80 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
81 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
83 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
84 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
85 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
86 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
87 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
88 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
89 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
90 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
91 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
92 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
93 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
94 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
96 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
97 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
98 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
99 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
100 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
101 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
102 2643221641 Nocardioides sp. Root122 Isolate Unclassified
103 2643221679 Angustibacter sp. Root456 Isolate Unclassified
104 2643221681 Aeromicrobium sp. Root472D3 Isolate Unclassified
105 2739367898 Nocardioides sp. CF479 Isolate Unclassified
106 2808606439 Nocardioides sp. SLBN-172 Isolate Unclassified
107 2811994878 Nocardioides sp. SLBN-169 Isolate Unclassified
108 2816332119 Kribbella amoyensis DSM 24683 Isolate Rhizosphere
109 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
110 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified
111 2928121344 Plantibacter flavus 1756 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 92.81
Metatranscriptomes 1.2
Isolates 5.99

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.99
Nodule 0
Rhizoplane 4.19
Rhizosphere 83.83
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0207646_10012963 3300025922 Bacteria 7991
2 Ga0070658_10000455 3300005327 Bacteria 35487
3 Ga0070658_10000525 3300005327 Bacteria 33235
4 Ga0070658_10384727 3300005327 Bacteria 1204
5 Ga0070680_100024958 3300005336 Bacteria 4778
6 Ga0070680_100081764 3300005336 Bacteria 2665
7 Ga0070680_100139853 3300005336 Bacteria 2030
8 Ga0070680_100169382 3300005336 Bacteria 1837
9 Ga0070682_100047654 3300005337 Bacteria 2665
10 Ga0070660_100099234 3300005339 Bacteria 2306
11 Ga0070660_100164920 3300005339 Bacteria 1787
12 Ga0070660_100297302 3300005339 Bacteria 1323
13 Ga0070660_100444536 3300005339 Bacteria 1075
14 Ga0070709_10125122 3300005434 Bacteria 1748
15 Ga0070708_100125860 3300005445 Bacteria 2368
16 Ga0070708_100191315 3300005445 Bacteria 1914
17 Ga0070681_10000036 3300005458 Bacteria 97835
18 Ga0070681_10004234 3300005458 Bacteria 13599
19 Ga0070681_10019140 3300005458 Bacteria 6851
20 Ga0070681_10045610 3300005458 Bacteria 4385
21 Ga0070685_10193925 3300005466 Bacteria 1316
22 Ga0070706_100076193 3300005467 Bacteria 3104
23 Ga0070706_100120420 3300005467 Bacteria 2446
24 Ga0070707_100027675 3300005468 Bacteria 5392
25 Ga0070707_100158400 3300005468 Bacteria 2205
26 Ga0070679_100000098 3300005530 Bacteria 67077
27 Ga0070679_100002368 3300005530 Bacteria 17089
28 Ga0070679_100005448 3300005530 Bacteria 11801
29 Ga0070679_100108095 3300005530 Bacteria 2767
30 Ga0070679_100367287 3300005530 Bacteria 1386
31 Ga0068857_100409283 3300005577 Bacteria 1263
32 Ga0068863_100173476 3300005841 Bacteria 2069
33 Ga0075365_10009872 3300006038 Bacteria 5523
34 Ga0075434_100401340 3300006871 Bacteria 1392
35 Ga0075436_100279249 3300006914 Bacteria 1194
36 Ga0105237_10000051 3300009545 Bacteria 160485
37 Ga0105238_10072540 3300009551 Bacteria 3438
38 Ga0163162_10379753 3300013306 Bacteria 1546
39 Ga0157380_10141934 3300014326 Bacteria 2065
40 Ga0163161_10058553 3300017792 Bacteria 2800
41 Ga0206354_10674674 3300020081 Bacteria 5071
42 Ga0206353_10963910 3300020082 Bacteria 8905
43 Ga0207692_10013124 3300025898 Bacteria 3585
44 Ga0207647_10036622 3300025904 Bacteria 3116
45 Ga0207699_10101071 3300025906 Bacteria 1830
46 Ga0207699_10171623 3300025906 Bacteria 1451
47 Ga0207705_10001255 3300025909 Bacteria 20400
48 Ga0207705_10005381 3300025909 Bacteria 9573
49 Ga0207705_10012807 3300025909 Bacteria 6055
50 Ga0207684_10001866 3300025910 Bacteria 21944
51 Ga0207684_10040946 3300025910 Bacteria 3929
52 Ga0207684_10070551 3300025910 Bacteria 2969
53 Ga0207707_10000614 3300025912 Bacteria 35530
54 Ga0207707_10000945 3300025912 Bacteria 28008
55 Ga0207707_10037586 3300025912 Bacteria 4231
56 Ga0207707_10043273 3300025912 Bacteria 3928
57 Ga0207671_10000040 3300025914 Bacteria 216380
58 Ga0207660_10000119 3300025917 Bacteria 45982
59 Ga0207660_10007495 3300025917 Bacteria 7061
60 Ga0207660_10106148 3300025917 Bacteria 2106
61 Ga0207657_10104602 3300025919 Bacteria 2344
62 Ga0207652_10000131 3300025921 Bacteria 80949
63 Ga0207652_10004622 3300025921 Bacteria 11157
64 Ga0207652_10015691 3300025921 Bacteria 6169
65 Ga0207652_10130547 3300025921 Bacteria 2241
66 Ga0207646_10131385 3300025922 Bacteria 2254
67 Ga0207694_10055610 3300025924 Bacteria 3072
68 Ga0207664_10036150 3300025929 Bacteria 3816
69 Ga0207661_10038751 3300025944 Bacteria 3738
70 Ga0207708_10150558 3300026075 Bacteria 1831
71 Ga0207641_10121132 3300026088 Bacteria 2335
72 Ga0207674_10036572 3300026116 Bacteria 5113
73 Ga0207683_10233645 3300026121 Bacteria 1677
74 Ga0265336_10003169 3300028666 Bacteria 6537
75 Ga0265338_10007616 3300028800 Bacteria 13367
76 Ga0316181_1182281 3300030744 Bacteria 1303
77 Ga0307409_100457843 3300031995 Bacteria 1233
78 Ga0307414_10171764 3300032004 Bacteria 1734
79 Ga0395899_0394307 3300037312 Bacteria 917
80 Ga0395900_0028520 3300037418 Bacteria 5720
81 Ga0400485_02467 3300038735 Bacteria 19358
82 Ga0400488_22554 3300038741 Bacteria 3824
83 Ga0400486_12851 3300038742 Bacteria 16104
84 Ga0436363_1562322 3300039450 Bacteria 2389
85 Ga0466972_0016570 3300044658 Bacteria 3685
86 Ga0466961_0003322 3300044693 Bacteria 10037
87 Ga0466963_0051654 3300044694 Bacteria 2725
88 Ga0466964_0054333 3300044706 Bacteria 1651
89 Ga0466971_0011844 3300044719 Bacteria 3821
90 Ga0466970_0013956 3300044765 Bacteria 4122
91 Ga0466970_0032555 3300044765 Bacteria 2754
92 Ga0466970_0040442 3300044765 Bacteria 2476
93 Ga0466970_0045251 3300044765 Bacteria 2343
94 Ga0466970_0056266 3300044765 Bacteria 2102
95 Ga0466970_0073513 3300044765 Bacteria 1840
96 Ga0466970_0085678 3300044765 Bacteria 1707
97 Ga0466957_0029618 3300044842 Bacteria 3266
98 Ga0466957_0144572 3300044842 Bacteria 1534
99 Ga0466960_0058051 3300044901 Bacteria 1889
100 Ga0466958_0020148 3300045836 Bacteria 3888
101 Ga0466967_0035491 3300045976 Bacteria 4246
102 Ga0466967_0068864 3300045976 Bacteria 3161
103 Ga0466967_0134994 3300045976 Bacteria 2294
104 Ga0466967_0553464 3300045976 Bacteria 1132
105 Ga0495603_0246390 3300046455 Bacteria 1029
106 Ga0495641_0111588 3300046461 Bacteria 1220
107 Ga0495585_0056821 3300046492 Bacteria 2161
108 Ga0495656_0135383 3300046615 Bacteria 1176
109 Ga0495658_0111891 3300046683 Bacteria 1642
110 Ga0495676_0013917 3300047321 Bacteria 7212
111 Ga0496103_0031397 3300048906 Bacteria 3236
112 Ga0496105_0251955 3300048908 Bacteria 1430
113 Ga0496106_0093668 3300048909 Bacteria 2322
114 Ga0496109_0089727 3300048912 Bacteria 2842
115 Ga0496109_0163850 3300048912 Bacteria 2084
116 Ga0496111_0019534 3300048914 Bacteria 4708
117 Ga0496113_0075891 3300048916 Bacteria 2566
118 Ga0496123_0050128 3300048926 Bacteria 2792
119 Ga0496124_0045309 3300048927 Bacteria 3771
120 Ga0496126_0036755 3300048929 Bacteria 4576
121 Ga0501031_0003316 3300049568 Bacteria 10335
122 Ga0501031_0143075 3300049568 Bacteria 1563
123 Ga0501032_0057957 3300049569 Bacteria 2601
124 Ga0501036_0044186 3300049572 Bacteria 3774
125 Ga0501036_0198120 3300049572 Bacteria 1689
126 Ga0501036_0463709 3300049572 Bacteria 1055
127 Ga0501037_0027816 3300049573 Bacteria 4179
128 Ga0501039_0037961 3300049575 Bacteria 3720
129 Ga0501039_0052874 3300049575 Bacteria 3142
130 Ga0501039_0149034 3300049575 Bacteria 1838
131 Ga0501040_0107813 3300049576 Bacteria 1947
132 Ga0501041_0071712 3300049577 Bacteria 2127
133 Ga0501042_0067780 3300049578 Bacteria 2551
134 Ga0501042_0169960 3300049578 Bacteria 1573
135 Ga0501042_0462158 3300049578 Bacteria 921
136 Ga0501067_0129167 3300049583 Bacteria 1406
137 Ga0501070_0145704 3300049586 Bacteria 1955
138 Ga0501071_0070354 3300049587 Bacteria 2549
139 Ga0501072_0171166 3300049588 Bacteria 1733
140 Ga0501075_0029639 3300049591 Bacteria 4048
141 Ga0501075_0433715 3300049591 Bacteria 1002
142 Ga0501076_0042701 3300049592 Bacteria 3570
143 Ga0501076_0229166 3300049592 Bacteria 1519
144 Ga0501076_0639404 3300049592 Bacteria 878
145 Ga0501079_0370748 3300049741 Bacteria 1122
146 Ga0501081_0157848 3300049743 Bacteria 1633
147 Ga0501035_0138428 3300049822 Bacteria 2118
148 Ga0501035_0446253 3300049822 Bacteria 1071
149 Ga0501045_0016449 3300049824 Bacteria 5254
150 Ga0501045_0085177 3300049824 Bacteria 2332
151 nmdc:mga00v17_108086_c1 3300050491 Bacteria 1762
152 nmdc:mga0yw44_151578_c1 3300050492 Bacteria 1513
153 nmdc:mga0yw44_4767_c1 3300050492 Bacteria 6283
154 nmdc:mga08x19_96539_c1 3300050514 Bacteria 1956
155 Ga0500644_0000666 3300053088 Bacteria 12585
156 Ga0501084_0168760 3300054114 Bacteria 1847
157 Ga0501082_0055326 3300060353 Bacteria 3419
158 2644229048 2643221641 Bacteria 4490190
159 2644446502 2643221679 Bacteria 3839507
160 2644456678 2643221681 Bacteria 3707866
161 2740166857 2739367898 Bacteria 4367674
162 2809195599 2808606439 Bacteria 5952208
163 2812350498 2811994878 Bacteria 5992952
164 2816425310 2816332119 Bacteria 8120218
165 2857733477 2857729791 Bacteria 4040535
166 2891971901 2891968417 Bacteria 5821697
167 2928124725 2928121344 Bacteria 3972376
168 Ga0207646_10012963
169 Ga0070658_10000455
170 Ga0070658_10000525
171 Ga0070658_10384727
172 Ga0070680_100024958
173 Ga0070680_100081764
174 Ga0070680_100139853
175 Ga0070680_100169382
176 Ga0070682_100047654
177 Ga0070660_100099234
178 Ga0070660_100164920
179 Ga0070660_100297302
180 Ga0070660_100444536
181 Ga0070709_10125122
182 Ga0070708_100125860
183 Ga0070708_100191315
184 Ga0070681_10000036
185 Ga0070681_10004234
186 Ga0070681_10019140
187 Ga0070681_10045610
188 Ga0070685_10193925
189 Ga0070706_100076193
190 Ga0070706_100120420
191 Ga0070707_100027675
192 Ga0070707_100158400
193 Ga0070679_100000098
194 Ga0070679_100002368
195 Ga0070679_100005448
196 Ga0070679_100108095
197 Ga0070679_100367287
198 Ga0068857_100409283
199 Ga0068863_100173476
200 Ga0075365_10009872
201 Ga0075434_100401340
202 Ga0075436_100279249
203 Ga0105237_10000051
204 Ga0105238_10072540
205 Ga0163162_10379753
206 Ga0157380_10141934
207 Ga0163161_10058553
208 Ga0206354_10674674
209 Ga0206353_10963910
210 Ga0207692_10013124
211 Ga0207647_10036622
212 Ga0207699_10101071
213 Ga0207699_10171623
214 Ga0207705_10001255
215 Ga0207705_10005381
216 Ga0207705_10012807
217 Ga0207684_10001866
218 Ga0207684_10040946
219 Ga0207684_10070551
220 Ga0207707_10000614
221 Ga0207707_10000945
222 Ga0207707_10037586
223 Ga0207707_10043273
224 Ga0207671_10000040
225 Ga0207660_10000119
226 Ga0207660_10007495
227 Ga0207660_10106148
228 Ga0207657_10104602
229 Ga0207652_10000131
230 Ga0207652_10004622
231 Ga0207652_10015691
232 Ga0207652_10130547
233 Ga0207646_10131385
234 Ga0207694_10055610
235 Ga0207664_10036150
236 Ga0207661_10038751
237 Ga0207708_10150558
238 Ga0207641_10121132
239 Ga0207674_10036572
240 Ga0207683_10233645
241 Ga0265336_10003169
242 Ga0265338_10007616
243 Ga0316181_1182281
244 Ga0307409_100457843
245 Ga0307414_10171764
246 Ga0395899_0394307
247 Ga0395900_0028520
248 Ga0400485_02467
249 Ga0400488_22554
250 Ga0400486_12851
251 Ga0436363_1562322
252 Ga0466972_0016570
253 Ga0466961_0003322
254 Ga0466963_0051654
255 Ga0466964_0054333
256 Ga0466971_0011844
257 Ga0466970_0013956
258 Ga0466970_0032555
259 Ga0466970_0040442
260 Ga0466970_0045251
261 Ga0466970_0056266
262 Ga0466970_0073513
263 Ga0466970_0085678
264 Ga0466957_0029618
265 Ga0466957_0144572
266 Ga0466960_0058051
267 Ga0466958_0020148
268 Ga0466967_0035491
269 Ga0466967_0068864
270 Ga0466967_0134994
271 Ga0466967_0553464
272 Ga0495603_0246390
273 Ga0495641_0111588
274 Ga0495585_0056821
275 Ga0495656_0135383
276 Ga0495658_0111891
277 Ga0495676_0013917
278 Ga0496103_0031397
279 Ga0496105_0251955
280 Ga0496106_0093668
281 Ga0496109_0089727
282 Ga0496109_0163850
283 Ga0496111_0019534
284 Ga0496113_0075891
285 Ga0496123_0050128
286 Ga0496124_0045309
287 Ga0496126_0036755
288 Ga0501031_0003316
289 Ga0501031_0143075
290 Ga0501032_0057957
291 Ga0501036_0044186
292 Ga0501036_0198120
293 Ga0501036_0463709
294 Ga0501037_0027816
295 Ga0501039_0037961
296 Ga0501039_0052874
297 Ga0501039_0149034
298 Ga0501040_0107813
299 Ga0501041_0071712
300 Ga0501042_0067780
301 Ga0501042_0169960
302 Ga0501042_0462158
303 Ga0501067_0129167
304 Ga0501070_0145704
305 Ga0501071_0070354
306 Ga0501072_0171166
307 Ga0501075_0029639
308 Ga0501075_0433715
309 Ga0501076_0042701
310 Ga0501076_0229166
311 Ga0501076_0639404
312 Ga0501079_0370748
313 Ga0501081_0157848
314 Ga0501035_0138428
315 Ga0501035_0446253
316 Ga0501045_0016449
317 Ga0501045_0085177
318 nmdc:mga00v17_108086_c1
319 nmdc:mga0yw44_151578_c1
320 nmdc:mga0yw44_4767_c1
321 nmdc:mga08x19_96539_c1
322 Ga0500644_0000666
323 Ga0501084_0168760
324 Ga0501082_0055326
325 2644229048
326 2644446502
327 2644456678
328 2740166857
329 2809195599
330 2812350498
331 2816425310
332 2857733477
333 2891971901
334 2928124725

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01509

TruB_N

TruB family pseudouridylate synthase (N terminal domain)

53

211

0.95

PF09142

TruB_C

tRNA Pseudouridine synthase II, C terminal

267

327

0.94

PF16198

TruB_C_2

tRNA pseudouridylate synthase B C-terminal domain

212

263

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
1zl3-assembly1.cif.gz_A coupling of active site motions and rna binding 0.9055 1 278
1ze2-assembly1.cif.gz_A conformational change of pseudouridine 55 synthase upon its association with rna substrate 0.8918 1 277
2ab4-assembly1.cif.gz_A dissecting the roles of a strictly conserved tyrosine in substrate recognition and catalysis by pseudouridine 55 synthase 0.8907 1 278
1zl3-assembly1.cif.gz_A coupling of active site motions and rna binding 0.8903 1 278
2ab4-assembly1.cif.gz_A dissecting the roles of a strictly conserved tyrosine in substrate recognition and catalysis by pseudouridine 55 synthase 0.8759 1 278
ID Description Score Start End Superfamily
af_Q0WVR7_318_539_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9693 2 210 3.30.2350.10
1k8wA01 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9629 1 209 3.30.2350.10
af_P9WHP7_7_227_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.96 4 220 3.30.2350.10
af_Q2G2Q3_1_236_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9571 1 210 3.30.2350.10
af_Q8I715_322_559_3.30.2350.10 Alpha Beta;2-Layer Sandwich;Pseudouridine synthase;Pseudouridine synthase 0.9521 2 213 3.30.2350.10
ID Description Score Start End GO Terms
AF-A0A523W975-F1-model_v4 tRNA pseudouridine synthase B (EC 5.4.99.25) (tRNA pseudouridine(55) synthase) (Psi55 synthase) (tRNA pseudouridylate synthase) (tRNA-uridine isomerase) 0.9872 3 209 GO:0003723
GO:0031119
GO:0160148
GO:1990481
AF-A0A3B9B8T6-F1-model_v4 deleted 0.9857 1 210
AF-A0A6I3E4Z8-F1-model_v4 tRNA pseudouridine(55) synthase (EC 5.4.99.25) 0.9844 3 137 GO:0003723
GO:0006400
GO:0160148
GO:1990481
AF-X1MVW6-F1-model_v4 tRNA pseudouridine(55) synthase (EC 5.4.99.25) 0.9842 3 189 GO:0003723
GO:0006400
GO:0009982
GO:1990481
AF-A0A3D2JGV7-F1-model_v4 deleted 0.9839 1 201

Map