F247975

General Info

Members Datasets Scaffolds Average Seq Length
166 116 161 422

Family's Representative Sequence

Representative Sequence 3300005563|Ga0068855_100166810|Ga0068855_1001668102
Length 444
Sequence VAQLSSLAGVGTVAGVHRSAVRIADLLAVWLGKLTLIGLRLLGRRGNALPGLVVEKVFPRYLTRAMAALPQGVIVVSGTNGKTTTTKMVATLLGERLRVLTNDTGSNFVRGAITATVEHATWTGRLRYDVAVFELDEAWAVRFVQKVTPQRALLLNVMRDQLDRFGEIDTTAGLLGKVAAATTGQVVLNRDDERIAALATGTSAAVTYYGVAPELRPAFPNDEELYGGPVHVSDRPARVELRALPAPGRPAATLRIDGTDADVLLRAEGPHNAQNACGAAAIALTFGFDAATVLAGLAKVSPAFGRGQTFDVDGRAVTLQLVKNPAGFRQTLRTLDAGTPEAIVIAINDDYADGRDVSWLWDVDFRALAPLPTRRATAGTRAADMAVRLRYDDVAVDEIEPDLEKAVRTAVAAVAPAHRVVVFSTYTAMWELHAVLQRIGVARA

Samples

Sample ID Description Type Environment
1 2537561592 Arthrobacter crystallopoietes BAB-32 Isolate Rhizosphere
2 2784132109 Dermacoccus sp. DS28 SAI-028 Isolate Unclassified
3 2808606700 Arthrobacter agilis UMCV2 Isolate Rhizosphere
4 2905926851 Arthrobacter sedimenti MIC A30 Isolate Rhizosphere
5 2946003308 Arthrobacter agilis W3I6 Isolate Rhizosphere
6 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
7 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
8 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
9 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
10 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
11 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
12 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
13 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
14 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
15 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
16 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
17 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
18 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
19 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
20 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
21 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
22 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
23 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
24 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
27 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
28 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
29 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
30 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
31 3300009979 Switchgrass associated microbial communities from Austin, Texas, USA, to study host-microbe interactions - RS_126 metaG Metagenome Rhizosphere
32 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
33 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
34 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
35 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
36 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
37 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
45 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300030734 Rhizosphere soil microbial communities in healthy wheat plant from Wellcamp field in Toowoomba, Australia - sample 5 Metagenome Rhizosphere
53 3300030742 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 9 Metagenome Rhizosphere
54 3300030744 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 7 Metagenome Rhizosphere
55 3300030745 Rhizosphere soil microbial communities in a healthy wheat plant from a non-infected Wellcamp field in Toowoomba, Australia - sample 8 Metagenome Rhizosphere
56 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
57 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
58 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
59 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
60 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
61 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
62 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
63 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
64 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
65 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
66 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
67 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
68 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
69 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
70 3300042146 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 Metagenome Rhizosphere
71 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
72 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
73 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
74 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
75 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
76 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
77 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
78 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
79 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
80 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
81 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
82 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
83 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
84 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
85 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
86 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
87 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
88 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
89 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
90 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
91 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
92 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
93 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
94 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
95 3300049537 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B12_A_3_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
96 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
100 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
101 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
102 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
103 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
104 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
105 3300053090 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere Metagenome Endosphere
106 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
107 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
108 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
109 3300053109 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 endosphere Metagenome Endosphere
110 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
111 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
112 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
113 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
114 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
115 3300053724 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co3_21_62 endosphere Metagenome Endosphere
116 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 96.39
Metatranscriptomes 0.6
Isolates 3.01

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 11.45
Nodule 0
Rhizoplane 4.22
Rhizosphere 78.92
Stem 0
Stem Tuber 0
Unclassified 5.42

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24735J21928_10009332 3300002067 Bacteria 3153
2 rootH1_10009329 3300003316 Bacteria 46993
3 rootH2_10006821 3300003320 Bacteria 94080
4 Ga0070666_10029959 3300005335 Bacteria 3582
5 Ga0070668_100029336 3300005347 Bacteria 4178
6 Ga0070667_100007409 3300005367 Bacteria 9115
7 Ga0070667_100037490 3300005367 Bacteria 4064
8 Ga0070714_100000007 3300005435 Bacteria 285654
9 Ga0070700_100000015 3300005441 Bacteria 149873
10 Ga0070665_100002075 3300005548 Bacteria 22481
11 Ga0068855_100000002 3300005563 Bacteria 616881
12 Ga0068855_100096056 3300005563 Bacteria 3416
13 Ga0068855_100166810 3300005563 Bacteria 2496
14 Ga0068857_100000057 3300005577 Bacteria 62388
15 Ga0068856_100006479 3300005614 Bacteria 11478
16 Ga0068856_100240761 3300005614 Bacteria 1824
17 Ga0068852_100000001 3300005616 Bacteria 716526
18 Ga0068852_100056709 3300005616 Bacteria 3387
19 Ga0068859_100014613 3300005617 Bacteria 7886
20 Ga0068863_100002059 3300005841 Bacteria 19927
21 Ga0068860_100000465 3300005843 Bacteria 50703
22 Ga0075365_10000642 3300006038 Bacteria 13851
23 Ga0075428_100000608 3300006844 Bacteria 36522
24 Ga0097620_100014613 3300006931 Bacteria 7886
25 Ga0105240_10002413 3300009093 Bacteria 30045
26 Ga0105240_10063174 3300009093 Bacteria 4607
27 Ga0105247_10006260 3300009101 Bacteria 7378
28 Ga0105241_10004024 3300009174 Bacteria 10875
29 Ga0105241_10079011 3300009174 Bacteria 2572
30 Ga0105241_10081496 3300009174 Bacteria 2535
31 Ga0105248_10153695 3300009177 Bacteria 2596
32 Ga0105237_10000002 3300009545 Bacteria 702357
33 Ga0105237_10044561 3300009545 Bacteria 4468
34 Ga0105238_10001341 3300009551 Bacteria 24723
35 Ga0105238_10055843 3300009551 Bacteria 3963
36 Ga0105032_100027 3300009979 Bacteria 26827
37 Ga0105239_10069159 3300010375 Bacteria 3880
38 Ga0105246_10021513 3300011119 Bacteria 4151
39 Ga0157371_10011537 3300013102 Bacteria 6795
40 Ga0157369_10000055 3300013105 Bacteria 161739
41 Ga0157369_10010107 3300013105 Bacteria 10769
42 Ga0157369_10054452 3300013105 Bacteria 4320
43 Ga0157372_10000004 3300013307 Bacteria 435659
44 Ga0207654_10019470 3300025911 Bacteria 3583
45 Ga0207695_10035555 3300025913 Bacteria 5400
46 Ga0207695_10077223 3300025913 Bacteria 3383
47 Ga0207695_10114651 3300025913 Bacteria 2669
48 Ga0207671_10000008 3300025914 Bacteria 798229
49 Ga0207671_10071654 3300025914 Bacteria 2585
50 Ga0207694_10006087 3300025924 Bacteria 9223
51 Ga0207694_10043131 3300025924 Bacteria 3481
52 Ga0207664_10000014 3300025929 Bacteria 249865
53 Ga0207667_10000005 3300025949 Bacteria 715503
54 Ga0207667_10061123 3300025949 Bacteria 3942
55 Ga0207667_10123881 3300025949 Bacteria 2663
56 Ga0207658_10005068 3300025986 Bacteria 9064
57 Ga0207658_10013351 3300025986 Bacteria 5609
58 Ga0207703_10045141 3300026035 Bacteria 3544
59 Ga0207708_10000004 3300026075 Bacteria 293087
60 Ga0207702_10007919 3300026078 Bacteria 9005
61 Ga0207702_10199854 3300026078 Bacteria 1852
62 Ga0207641_10007490 3300026088 Bacteria 9085
63 Ga0207674_10000299 3300026116 Bacteria 62812
64 Ga0207698_10000001 3300026142 Bacteria 625389
65 Ga0207698_10042700 3300026142 Bacteria 3390
66 Ga0268266_10001486 3300028379 Bacteria 27812
67 Ga0268264_10000138 3300028381 Bacteria 172597
68 Ga0316179_1050917 3300030734 Bacteria 12410
69 Ga0316183_1015857 3300030742 Bacteria 11201
70 Ga0316183_1084044 3300030742 Bacteria 11302
71 Ga0316183_1139267 3300030742 Bacteria 12711
72 Ga0316181_1097946 3300030744 Bacteria 38057
73 Ga0316182_1029946 3300030745 Bacteria 13846
74 Ga0316182_1169417 3300030745 Bacteria 13957
75 Ga0316182_1285921 3300030745 Bacteria 2320
76 Ga0307516_10014965 3300031730 Bacteria 8181
77 Ga0307405_10034543 3300031731 Unclassified 3010
78 Ga0307405_10047063 3300031731 Bacteria 2654
79 Ga0307405_10048981 3300031731 Bacteria 2609
80 Ga0307405_10198550 3300031731 Bacteria 1455
81 Ga0307413_10031102 3300031824 Bacteria 3007
82 Ga0307410_10011981 3300031852 Bacteria 4988
83 Ga0307410_10028055 3300031852 Bacteria 3566
84 Ga0307406_10000001 3300031901 Bacteria 638191
85 Ga0307406_10000483 3300031901 Bacteria 22955
86 Ga0307412_10023681 3300031911 Bacteria 3781
87 Ga0307409_100039687 3300031995 Bacteria 3496
88 Ga0307409_100069032 3300031995 Bacteria 2798
89 Ga0307416_100030286 3300032002 Bacteria 4058
90 Ga0395899_0019202 3300037312 Bacteria 5195
91 Ga0436364_1143728 3300037853 Bacteria 4952
92 Ga0436365_0913223 3300039437 Bacteria 8347
93 Ga0439442_000345 3300042002 Bacteria 11031
94 Ga0439462_0005447 3300042015 Bacteria 3138
95 Ga0450920_000020 3300042122 Bacteria 18358
96 Ga0450907_000143 3300042146 Bacteria 27339
97 Ga0439434_0000015 3300042435 Bacteria 44301
98 Ga0450918_001204 3300042531 Bacteria 5267
99 Ga0450918_005916 3300042531 Bacteria 2189
100 Ga0466965_0010313 3300044683 Bacteria 4355
101 Ga0466961_0016525 3300044693 Bacteria 4741
102 Ga0466963_0066110 3300044694 Bacteria 2425
103 Ga0466970_0001626 3300044765 Bacteria 10819
104 Ga0466970_0018554 3300044765 Bacteria 3603
105 Ga0466960_0003424 3300044901 Bacteria 6100
106 Ga0466959_0057259 3300045049 Bacteria 2842
107 Ga0466959_0081099 3300045049 Bacteria 2338
108 Ga0451576_0015998 3300045051 Bacteria 8292
109 Ga0466958_0009514 3300045836 Bacteria 5417
110 Ga0466958_0011787 3300045836 Bacteria 4935
111 Ga0466958_0016490 3300045836 Bacteria 4254
112 Ga0466958_0038729 3300045836 Bacteria 2861
113 Ga0466967_0001727 3300045976 Bacteria 13024
114 Ga0466967_0003165 3300045976 Bacteria 10611
115 Ga0466967_0027124 3300045976 Bacteria 4760
116 Ga0466967_0049774 3300045976 Bacteria 3667
117 Ga0466967_0057655 3300045976 Bacteria 3429
118 Ga0466967_0060373 3300045976 Bacteria 3359
119 Ga0466967_0084740 3300045976 Bacteria 2868
120 Ga0466967_0148228 3300045976 Bacteria 2190
121 Ga0466967_0204667 3300045976 Bacteria 1870
122 Ga0495638_0000061 3300046460 Bacteria 188551
123 Ga0495597_0061975 3300046542 Bacteria 1628
124 Ga0495671_0044518 3300046692 Bacteria 2225
125 Ga0495660_0000005 3300046810 Bacteria 574567
126 Ga0496102_0000013 3300048905 Bacteria 311668
127 Ga0496102_0002176 3300048905 Bacteria 16838
128 Ga0496103_0000105 3300048906 Bacteria 92467
129 Ga0496110_0087716 3300048913 Bacteria 2779
130 Ga0496113_0009873 3300048916 Bacteria 6287
131 Ga0496114_0169986 3300048917 Bacteria 1899
132 Ga0496115_0168930 3300048918 Bacteria 1809
133 Ga0496117_0068254 3300048920 Bacteria 2401
134 Ga0496119_0000022 3300048922 Bacteria 269878
135 Ga0496120_0072477 3300048923 Bacteria 1887
136 Ga0501321_001792 3300049537 Bacteria 1776
137 Ga0501034_0000028 3300049571 Bacteria 255803
138 Ga0501034_0091690 3300049571 Bacteria 3036
139 Ga0501037_0000001 3300049573 Bacteria 753276
140 Ga0501038_0006328 3300049574 Bacteria 10955
141 Ga0501038_0064119 3300049574 Bacteria 3134
142 Ga0501044_0264703 3300049823 Bacteria 1657
143 nmdc:mga0yw44_178_c1 3300050492 Bacteria 22323
144 nmdc:mga07m45_121722_c1 3300050496 Bacteria 1507
145 nmdc:mga0sz30_3733_c2 3300050516 Bacteria 2549
146 Ga0500643_002242 3300053087 Bacteria 10192
147 Ga0500643_002573 3300053087 Bacteria 9234
148 Ga0500644_0004892 3300053088 Bacteria 3368
149 Ga0500646_0000005 3300053090 Bacteria 130895
150 Ga0500583_0000730 3300053092 Bacteria 9542
151 Ga0500651_0000025 3300053093 Bacteria 123745
152 Ga0500641_0000001 3300053096 Bacteria 1115973
153 Ga0500569_000001 3300053109 Bacteria 137852
154 Ga0500594_0000011 3300053118 Bacteria 87409
155 Ga0500652_000001 3300053131 Bacteria 946868
156 Ga0500577_0007322 3300053142 Bacteria 3087
157 Ga0500588_0000027 3300053146 Bacteria 35097
158 Ga0500616_0000012 3300053153 Bacteria 681798
159 Ga0500616_0036365 3300053153 Bacteria 2672
160 Ga0500570_007148 3300053724 Bacteria 6103
161 Ga0466962_0026360 3300061719 Bacteria 2791

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300049574 Ga0501038_0064119 Ga0501038_0064119_1616_2803 368
2 3300003316 rootH1_10009329 rootH1_1000932933 374
3 3300045836 Ga0466958_0011787 Ga0466958_0011787_3389_4651 385
4 3300061719 Ga0466962_0026360 Ga0466962_0026360_1020_2282 385
5 3300053724 Ga0500570_007148 Ga0500570_007148_3658_4878 386
6 iso_pu_bacteria 2537561592 2537898022 386
7 3300049537 Ga0501321_001792 Ga0501321_001792_526_1758 390
8 3300039437 Ga0436365_0913223 Ga0436365_0913223_170_1444 393
9 3300037853 Ga0436364_1143728 Ga0436364_1143728_1689_2960 397
10 3300006038 Ga0075365_10000642 Ga0075365_1000064213 398
11 iso_pu_bacteria 2808606700 2810364843 399
12 iso_pu_bacteria 2905926851 2905931006 399
13 iso_pu_bacteria 2946003308 2946004317 399
14 3300005441 Ga0070700_100000015 Ga0070700_10000001578 401
15 3300026075 Ga0207708_10000004 Ga0207708_10000004217 401
16 3300031901 Ga0307406_10000001 Ga0307406_10000001331 401
17 3300031901 Ga0307406_10000483 Ga0307406_100004835 401
18 iso_pu_bacteria 2784132109 2784472897 401
19 3300009093 Ga0105240_10002413 Ga0105240_1000241337 402
20 3300009174 Ga0105241_10081496 Ga0105241_100814963 402
21 3300013105 Ga0157369_10000055 Ga0157369_1000005561 402
22 3300013105 Ga0157369_10010107 Ga0157369_100101079 402
23 3300013105 Ga0157369_10054452 Ga0157369_100544524 402
24 3300025913 Ga0207695_10114651 Ga0207695_101146512 402
25 3300031731 Ga0307405_10034543 Ga0307405_100345433 402
26 3300044765 Ga0466970_0018554 Ga0466970_0018554_2164_3450 402
27 3300049571 Ga0501034_0000028 Ga0501034_0000028_146524_147798 402
28 3300049571 Ga0501034_0091690 Ga0501034_0091690_231_1505 402
29 3300049573 Ga0501037_0000001 Ga0501037_0000001_49951_51225 402
30 3300049574 Ga0501038_0006328 Ga0501038_0006328_1976_3250 402
31 3300003320 rootH2_10006821 rootH2_100068216 403
32 3300005563 Ga0068855_100000002 Ga0068855_100000002421 403
33 3300005577 Ga0068857_100000057 Ga0068857_10000005748 403
34 3300005616 Ga0068852_100000001 Ga0068852_100000001339 403
35 3300006844 Ga0075428_100000608 Ga0075428_10000060830 403
36 3300009174 Ga0105241_10004024 Ga0105241_100040244 403
37 3300009177 Ga0105248_10153695 Ga0105248_101536952 403
38 3300009545 Ga0105237_10000002 Ga0105237_10000002236 403
39 3300009551 Ga0105238_10001341 Ga0105238_1000134118 403
40 3300009979 Ga0105032_100027 Ga0105032_1000272 403
41 3300011119 Ga0105246_10021513 Ga0105246_100215133 403
42 3300013102 Ga0157371_10011537 Ga0157371_100115376 403
43 3300025911 Ga0207654_10019470 Ga0207654_100194701 403
44 3300025914 Ga0207671_10000008 Ga0207671_10000008338 403
45 3300025924 Ga0207694_10006087 Ga0207694_100060873 403
46 3300025949 Ga0207667_10000005 Ga0207667_10000005531 403
47 3300026116 Ga0207674_10000299 Ga0207674_1000029927 403
48 3300026142 Ga0207698_10000001 Ga0207698_10000001291 403
49 3300030734 Ga0316179_1050917 Ga0316179_10509178 403
50 3300030742 Ga0316183_1015857 Ga0316183_101585713 403
51 3300030742 Ga0316183_1084044 Ga0316183_10840445 403
52 3300030742 Ga0316183_1139267 Ga0316183_11392675 403
53 3300030744 Ga0316181_1097946 Ga0316181_109794629 403
54 3300030745 Ga0316182_1029946 Ga0316182_10299464 403
55 3300030745 Ga0316182_1169417 Ga0316182_11694176 403
56 3300030745 Ga0316182_1285921 Ga0316182_12859212 403
57 3300031730 Ga0307516_10014965 Ga0307516_100149652 403
58 3300031731 Ga0307405_10047063 Ga0307405_100470632 403
59 3300031731 Ga0307405_10048981 Ga0307405_100489812 403
60 3300031731 Ga0307405_10198550 Ga0307405_101985501 403
61 3300031824 Ga0307413_10031102 Ga0307413_100311023 403
62 3300031852 Ga0307410_10011981 Ga0307410_100119816 403
63 3300031852 Ga0307410_10028055 Ga0307410_100280553 403
64 3300031911 Ga0307412_10023681 Ga0307412_100236814 403
65 3300031995 Ga0307409_100039687 Ga0307409_1000396874 403
66 3300031995 Ga0307409_100069032 Ga0307409_1000690323 403
67 3300032002 Ga0307416_100030286 Ga0307416_1000302862 403
68 3300037312 Ga0395899_0019202 Ga0395899_0019202_1234_2508 403
69 3300042002 Ga0439442_000345 Ga0439442_000345_5270_6562 403
70 3300042015 Ga0439462_0005447 Ga0439462_0005447_809_2101 403
71 3300042122 Ga0450920_000020 Ga0450920_000020_12940_14232 403
72 3300042146 Ga0450907_000143 Ga0450907_000143_4470_5762 403
73 3300042435 Ga0439434_0000015 Ga0439434_0000015_28908_30200 403
74 3300042531 Ga0450918_001204 Ga0450918_001204_906_2177 403
75 3300042531 Ga0450918_005916 Ga0450918_005916_34_1326 403
76 3300046460 Ga0495638_0000061 Ga0495638_0000061_83449_84723 403
77 3300046542 Ga0495597_0061975 Ga0495597_0061975_78_1352 403
78 3300046692 Ga0495671_0044518 Ga0495671_0044518_99_1373 403
79 3300046810 Ga0495660_0000005 Ga0495660_0000005_310383_311657 403
80 3300048917 Ga0496114_0169986 Ga0496114_0169986_647_1888 403
81 3300050492 nmdc:mga0yw44_178_c1 nmdc:mga0yw44_178_c1_12204_13478 403
82 3300050496 nmdc:mga07m45_121722_c1 nmdc:mga07m45_121722_c1_129_1403 403
83 3300050516 nmdc:mga0sz30_3733_c2 nmdc:mga0sz30_3733_c2_389_1666 403
84 3300053087 Ga0500643_002242 Ga0500643_002242_3964_5235 403
85 3300053087 Ga0500643_002573 Ga0500643_002573_6865_8139 403
86 3300053088 Ga0500644_0004892 Ga0500644_0004892_439_1716 403
87 3300053090 Ga0500646_0000005 Ga0500646_0000005_85291_86565 403
88 3300053092 Ga0500583_0000730 Ga0500583_0000730_4523_5797 403
89 3300053093 Ga0500651_0000025 Ga0500651_0000025_16232_17503 403
90 3300053096 Ga0500641_0000001 Ga0500641_0000001_1022545_1023819 403
91 3300053109 Ga0500569_000001 Ga0500569_000001_83450_84724 403
92 3300053118 Ga0500594_0000011 Ga0500594_0000011_69907_71178 403
93 3300053131 Ga0500652_000001 Ga0500652_000001_458573_459847 403
94 3300053142 Ga0500577_0007322 Ga0500577_0007322_175_1452 403
95 3300053146 Ga0500588_0000027 Ga0500588_0000027_21358_22632 403
96 3300053153 Ga0500616_0000012 Ga0500616_0000012_220132_221406 403
97 3300053153 Ga0500616_0036365 Ga0500616_0036365_745_2022 403
98 3300045051 Ga0451576_0015998 Ga0451576_0015998_4122_5396 404
99 3300005335 Ga0070666_10029959 Ga0070666_100299594 407
100 3300005347 Ga0070668_100029336 Ga0070668_1000293364 407
101 3300005367 Ga0070667_100037490 Ga0070667_1000374903 407
102 3300005548 Ga0070665_100002075 Ga0070665_10000207517 407
103 3300005841 Ga0068863_100002059 Ga0068863_10000205917 407
104 3300005843 Ga0068860_100000465 Ga0068860_10000046511 407
105 3300025986 Ga0207658_10013351 Ga0207658_100133515 407
106 3300026035 Ga0207703_10045141 Ga0207703_100451414 407
107 3300026088 Ga0207641_10007490 Ga0207641_100074907 407
108 3300028379 Ga0268266_10001486 Ga0268266_100014861 407
109 3300028381 Ga0268264_10000138 Ga0268264_10000138127 407
110 3300009551 Ga0105238_10055843 Ga0105238_100558434 408
111 3300025924 Ga0207694_10043131 Ga0207694_100431313 408
112 3300045976 Ga0466967_0027124 Ga0466967_0027124_1967_3244 408
113 3300048916 Ga0496113_0009873 Ga0496113_0009873_445_1713 408
114 3300005367 Ga0070667_100007409 Ga0070667_1000074097 409
115 3300005435 Ga0070714_100000007 Ga0070714_10000000771 409
116 3300009093 Ga0105240_10063174 Ga0105240_100631743 409
117 3300013307 Ga0157372_10000004 Ga0157372_10000004190 409
118 3300025913 Ga0207695_10077223 Ga0207695_100772232 409
119 3300025929 Ga0207664_10000014 Ga0207664_10000014160 409
120 3300025986 Ga0207658_10005068 Ga0207658_100050682 409
121 3300005563 Ga0068855_100096056 Ga0068855_1000960564 410
122 3300005563 Ga0068855_100166810 Ga0068855_1001668102 410
123 3300005614 Ga0068856_100006479 Ga0068856_1000064793 410
124 3300005614 Ga0068856_100240761 Ga0068856_1002407612 410
125 3300005616 Ga0068852_100056709 Ga0068852_1000567091 410
126 3300005617 Ga0068859_100014613 Ga0068859_1000146135 410
127 3300006931 Ga0097620_100014613 Ga0097620_1000146135 410
128 3300009101 Ga0105247_10006260 Ga0105247_100062602 410
129 3300009174 Ga0105241_10079011 Ga0105241_100790114 410
130 3300009545 Ga0105237_10044561 Ga0105237_100445615 410
131 3300010375 Ga0105239_10069159 Ga0105239_100691591 410
132 3300025913 Ga0207695_10035555 Ga0207695_100355552 410
133 3300025914 Ga0207671_10071654 Ga0207671_100716542 410
134 3300025949 Ga0207667_10061123 Ga0207667_100611234 410
135 3300025949 Ga0207667_10123881 Ga0207667_101238812 410
136 3300026078 Ga0207702_10007919 Ga0207702_100079199 410
137 3300026078 Ga0207702_10199854 Ga0207702_101998542 410
138 3300026142 Ga0207698_10042700 Ga0207698_100427001 410
139 3300044683 Ga0466965_0010313 Ga0466965_0010313_394_1656 410
140 3300044693 Ga0466961_0016525 Ga0466961_0016525_402_1664 410
141 3300044694 Ga0466963_0066110 Ga0466963_0066110_703_1965 410
142 3300044765 Ga0466970_0001626 Ga0466970_0001626_1877_3139 410
143 3300044901 Ga0466960_0003424 Ga0466960_0003424_1699_2961 410
144 3300045049 Ga0466959_0057259 Ga0466959_0057259_138_1424 410
145 3300045049 Ga0466959_0081099 Ga0466959_0081099_969_2255 410
146 3300045836 Ga0466958_0009514 Ga0466958_0009514_505_1767 410
147 3300045836 Ga0466958_0016490 Ga0466958_0016490_476_1732 410
148 3300045836 Ga0466958_0038729 Ga0466958_0038729_144_1406 410
149 3300045976 Ga0466967_0001727 Ga0466967_0001727_401_1663 410
150 3300045976 Ga0466967_0003165 Ga0466967_0003165_1173_2435 410
151 3300045976 Ga0466967_0049774 Ga0466967_0049774_1567_2829 410
152 3300045976 Ga0466967_0057655 Ga0466967_0057655_208_1473 410
153 3300045976 Ga0466967_0060373 Ga0466967_0060373_1508_2770 410
154 3300045976 Ga0466967_0084740 Ga0466967_0084740_990_2264 410
155 3300045976 Ga0466967_0148228 Ga0466967_0148228_842_2104 410
156 3300045976 Ga0466967_0204667 Ga0466967_0204667_507_1772 410
157 3300048905 Ga0496102_0000013 Ga0496102_0000013_203847_205139 410
158 3300048905 Ga0496102_0002176 Ga0496102_0002176_3359_4624 410
159 3300048906 Ga0496103_0000105 Ga0496103_0000105_31888_33180 410
160 3300048913 Ga0496110_0087716 Ga0496110_0087716_490_1752 410
161 3300048918 Ga0496115_0168930 Ga0496115_0168930_13_1284 410
162 3300048920 Ga0496117_0068254 Ga0496117_0068254_501_1793 410
163 3300048922 Ga0496119_0000022 Ga0496119_0000022_8951_10213 410
164 3300048923 Ga0496120_0072477 Ga0496120_0072477_531_1793 410
165 3300049823 Ga0501044_0264703 Ga0501044_0264703_160_1422 410
166 3300002067 JGI24735J21928_10009332 JGI24735J21928_100093322 411

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF08353

MurT_C

MurT ligase C-terminal

321

429

0.93

PF08245

Mur_ligase_M

Mur ligase middle domain

76

283

0.77

Structural Annotation

Top 5 Hits

ID Description Score Start End
4ziy-assembly1.cif.gz_A structure of udp-n-acetylmuramoylalanyl-d-glutamyl-2,6-diaminopimelate--d-alanyl-d-alanyl ligase from acinetobacter baumannii 0.7751 27 408
4qdi-assembly1.cif.gz_A crystal structure ii of murf from acinetobacter baumannii 0.7604 27 408
4qf5-assembly2.cif.gz_B crystal structure i of murf from acinetobacter baumannii 0.7597 30 408
2uag-assembly1.cif.gz_A udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase 0.7441 39 410
4uag-assembly1.cif.gz_A udp-n-acetylmuramoyl-l-alanine:d-glutamate ligase 0.7411 39 410
ID Description Score Start End Superfamily
af_P9WJL1_108_337_3.40.1190.10 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Mur-like, catalytic domain 0.8047 29 267 3.40.1190.10
4ziyA02 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Mur-like, catalytic domain 0.802 30 270 3.40.1190.10
af_P9WJL1_108_337_3.40.1190.10 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Mur-like, catalytic domain 0.7919 29 267 3.40.1190.10
af_Q2FWH4_87_313_3.40.1190.10 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Mur-like, catalytic domain 0.787 28 270 3.40.1190.10
4ziyA02 Alpha Beta;3-Layer(aba) Sandwich;UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase;Mur-like, catalytic domain 0.7858 30 270 3.40.1190.10
ID Description Score Start End GO Terms
AF-A0A3E2CC19-F1-model_v4 deleted 0.9518 5 174
AF-A0A0K2RU93-F1-model_v4 UDP-N-acetylmuramoylalanine--D-glutamate ligase 0.9393 31 171 GO:0005524
GO:0009058
GO:0016881
AF-A0A7X7NQM3-F1-model_v4 DUF1727 domain-containing protein 0.9361 2 169 GO:0005524
GO:0009058
GO:0016881
AF-A0A853ELZ2-F1-model_v4 DUF1727 domain-containing protein 0.9309 2 214 GO:0004326
GO:0005524
AF-A0A7C5UR84-F1-model_v4 DUF1727 domain-containing protein 0.9258 2 155 GO:0004326
GO:0005524

Feature Viewer

pLDDT pTM Quality
88.53 0.86 High
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Predicted Structure (AlphaFold2)

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