F247321

General Info

Members Datasets Scaffolds Average Seq Length
165 134 330 417

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2919704043|2919706039
Length 455
Sequence ATPSAQEPAAQFMGTGAWRRGLSYGLLGLPLAFVALPLYVILPNHYATAFGAPLALLGAVLLGARLADAVLDPWIGRWTDRLFTRSHHTVLGTSALAAVVLALGLWGLLFPPTEVRGAGMTALLAWAGVLMAITYTAYSIMAVAHQSWGARLGGTEAQRSRVVAWREALALLGVLIAAVLPGTLGLGATVGSFAVLLALGWWAWTRAVVPSPGAATAATSTTATSLHPLRQPAFQRLLAVFVINGTASAIPATLVLFFVQDRLQASPSVEPAFLATYFLFAALSIPLWVRLVTRFGLARTWLAGMGLSVAVFIWAATLGAVDIAAFLIVCALSGMALGTDLALPGAMLAGLIGQLGERGQREGAYFGWWSFATKLNLALAAGLALPLLAWFGYTPGARDPAALQTLTIAYCLLPCALKLLAGSALYALVIRPESRAANTPAARPHPAAATTRTQP

Samples

Sample ID Description Type Environment
1 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
2 3300002704 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB Metagenome Unclassified
3 3300002705 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS Metagenome Unclassified
4 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
5 3300002741 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL Metagenome Unclassified
6 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
7 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
8 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
9 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
10 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
11 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
12 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
13 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
14 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
15 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
16 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
17 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
18 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
19 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
20 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
21 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
22 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
23 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
24 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
25 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
26 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
27 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
28 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
29 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
30 3300006946 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG Metagenome Nodule
31 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
32 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
33 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
34 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
35 3300012502 Arabidopsis rhizosphere microbial communities from North Carolina - M.Oy.2.yng.040610 Metagenome Rhizosphere
36 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
37 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
38 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
39 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
40 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
41 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
42 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
43 3300025206 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mLB (SPAdes) (version 2) Metagenome Unclassified
44 3300025245 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mTSA (SPAdes) (version 3) Metagenome Endosphere
45 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
46 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
47 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
48 3300025291 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mLB_r2 (SPAdes) (version 3) Metagenome Endosphere
49 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
50 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
51 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
52 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
53 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
54 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300027111 Root nodule microbial communities of legume samples collected from California, USA - Medicago truncatula BG (SPAdes) (version 2) Metagenome Nodule
68 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
69 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
71 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
72 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
73 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
74 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
75 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
76 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
77 3300031649 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 16_EM Metagenome Unclassified
78 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
79 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
80 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
81 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
82 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
83 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
84 3300034819 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_1 Metagenome Rhizosphere
85 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
86 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
87 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
88 3300041491 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_1 MetaG Metagenome Unclassified
89 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
90 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
91 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
92 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
93 3300046519 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co2_51_16 rhizosphere Metagenome Rhizosphere
94 3300046530 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co1_10_5 rhizosphere Metagenome Rhizosphere
95 3300046542 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co2_52_27 rhizosphere Metagenome Rhizosphere
96 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
97 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
98 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
99 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
100 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
101 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
102 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
103 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
104 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
105 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
106 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
107 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
108 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
109 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
110 3300053129 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 endosphere Metagenome Endosphere
111 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
112 3300053154 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL2_38_7 endosphere Metagenome Endosphere
113 3300053739 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 endosphere Metagenome Endosphere
114 2919704043 Hydrogenophaga palleronii 4249 Isolate Unclassified
115 2511231002 Polaromonas sp. CF318 Isolate Rhizosphere
116 2547132374 Acidovorax radicis N35 Isolate Unclassified
117 2585428062 Methylibium sp. CF059 Isolate Rhizosphere
118 2643221570 Acidovorax sp. Root568 Isolate Unclassified
119 2643221596 Acidovorax sp. Root70 Isolate Unclassified
120 2643221609 Acidovorax sp. Root217 Isolate Unclassified
121 2643221611 Acidovorax sp. Root219 Isolate Unclassified
122 2643221652 Acidovorax sp. Root402 Isolate Unclassified
123 2643221660 Methylibium sp. Root1272 Isolate Unclassified
124 2643221717 Acidovorax sp. Root267 Isolate Unclassified
125 2721755523 Delftia sp. HK171 Isolate Unclassified
126 2738541277 Variovorax sp. GV051 Isolate Unclassified
127 2738541307 Variovorax sp. GV008 Isolate Unclassified
128 2738543012 Acidovorax sp. CF301 Isolate Unclassified
129 2738543019 Variovorax sp. GV040 Isolate Unclassified
130 2816332133 Acidovorax radicis 2721A Isolate Unclassified
131 2939631187 Ottowia thiooxydans 2709 Isolate Rhizosphere
132 2945909444 Variovorax sp. CRF3-Va-1 W1I1 Isolate Rhizosphere
133 2945984333 Variovorax sp. W2I14 Isolate Rhizosphere
134 2990710928 Acidovorax delafieldii SLBN-75 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 87.27
Metatranscriptomes 0
Isolates 12.73

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 20
Nodule 1.21
Rhizoplane 3.03
Rhizosphere 50.3
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24740J21852_10002575 3300001979 Bacteria 8171
2 JGI25155J39150_1000073 3300002704 Bacteria 62972
3 JGI25156J39149_1000609 3300002705 Bacteria 19855
4 JGI25154J39366_1000118 3300002738 Bacteria 64203
5 JGI25154J39366_1000258 3300002738 Bacteria 33918
6 JGI25157J39369_1000001 3300002741 Bacteria 363277
7 JGI25151J46595_10001868 3300003187 Bacteria 13459
8 rootH1_10066474 3300003316 Bacteria 2604
9 rootL2_10150718 3300003322 Bacteria 4511
10 Ga0065165_1028918 3300005262 Bacteria 1782
11 Ga0070677_10007563 3300005333 Bacteria 3632
12 Ga0068869_100063141 3300005334 Bacteria 2720
13 Ga0070669_100015464 3300005353 Bacteria 5438
14 Ga0070675_100007240 3300005354 Bacteria 8557
15 Ga0070674_100013055 3300005356 Bacteria 5122
16 Ga0070673_100078397 3300005364 Bacteria 2672
17 Ga0068867_100010126 3300005459 Bacteria 6647
18 Ga0068853_100053897 3300005539 Bacteria 3465
19 Ga0070672_100010723 3300005543 Bacteria 6367
20 Ga0070665_100054244 3300005548 Bacteria 4020
21 Ga0070665_100089626 3300005548 Bacteria 3082
22 Ga0068855_100048792 3300005563 Bacteria 4996
23 Ga0068854_100041728 3300005578 Bacteria 3243
24 Ga0068852_100148797 3300005616 Bacteria 2175
25 Ga0068864_100004658 3300005618 Bacteria 11252
26 Ga0068860_100177370 3300005843 Bacteria 2059
27 Ga0075365_10006251 3300006038 Bacteria 6531
28 Ga0075365_10028414 3300006038 Bacteria 3567
29 Ga0075362_10050869 3300006177 Bacteria 1853
30 Ga0075367_10051964 3300006178 Bacteria 2424
31 Ga0075367_10052965 3300006178 Bacteria 2403
32 Ga0075366_10015089 3300006195 Bacteria 4420
33 Ga0075366_10016585 3300006195 Bacteria 4237
34 Ga0075366_10037423 3300006195 Bacteria 2865
35 Ga0075366_10166163 3300006195 Bacteria 1338
36 Ga0075370_10083539 3300006353 Bacteria 1837
37 Ga0079104_1000058 3300006946 Bacteria 165039
38 Ga0105250_10005039 3300009092 Bacteria 5977
39 Ga0105243_10071409 3300009148 Bacteria 2807
40 Ga0105237_10028198 3300009545 Bacteria 5722
41 Ga0105238_10087544 3300009551 Bacteria 3102
42 Ga0157347_1002485 3300012502 Bacteria 1582
43 Ga0157370_10008304 3300013104 Bacteria 11205
44 Ga0157369_10011567 3300013105 Bacteria 10019
45 Ga0157380_10239614 3300014326 Bacteria 1634
46 Ga0182008_10006731 3300014497 Bacteria 6399
47 Ga0157379_10013872 3300014968 Bacteria 7064
48 Ga0157376_10014686 3300014969 Bacteria 5888
49 Ga0163161_10000312 3300017792 Bacteria 42270
50 Ga0209435_100001 3300025206 Bacteria 1424171
51 Ga0207425_1000906 3300025245 Bacteria 14258
52 Ga0209646_1000001 3300025246 Bacteria 3092932
53 Ga0209026_1000001 3300025250 Bacteria 1228671
54 Ga0209759_1000001 3300025256 Bacteria 2799452
55 Ga0209675_1005841 3300025291 Bacteria 5056
56 Ga0209025_1009402 3300025294 Bacteria 6816
57 Ga0209025_1011721 3300025294 Bacteria 5728
58 Ga0209025_1014606 3300025294 Bacteria 4809
59 Ga0209564_1001930 3300025295 Bacteria 18511
60 Ga0209758_1022718 3300025297 Bacteria 2863
61 Ga0209050_1010665 3300025298 Bacteria 4489
62 Ga0209257_1003358 3300025304 Bacteria 13842
63 Ga0207696_1006227 3300025711 Bacteria 4835
64 Ga0207682_10008136 3300025893 Bacteria 4157
65 Ga0207681_10011748 3300025923 Bacteria 5385
66 Ga0207650_10002095 3300025925 Bacteria 13955
67 Ga0207659_10011027 3300025926 Bacteria 5695
68 Ga0207709_10000380 3300025935 Bacteria 44138
69 Ga0207669_10011108 3300025937 Bacteria 4368
70 Ga0207704_10134310 3300025938 Bacteria 1719
71 Ga0207691_10001394 3300025940 Bacteria 24181
72 Ga0207667_10013425 3300025949 Bacteria 9372
73 Ga0207648_10001726 3300026089 Bacteria 23928
74 Ga0207683_10014138 3300026121 Bacteria 6801
75 Ga0207683_10021564 3300026121 Bacteria 5519
76 Ga0207698_10051936 3300026142 Bacteria 3137
77 Ga0209281_1000017 3300027111 Bacteria 583251
78 Ga0209966_1000007 3300027695 Bacteria 95874
79 Ga0268266_10044827 3300028379 Bacteria 3781
80 Ga0307515_10000109 3300028794 Bacteria 195895
81 Ga0307515_10003752 3300028794 Bacteria 31839
82 Ga0307512_10038035 3300030522 Bacteria 4055
83 Ga0265327_10000510 3300031251 Bacteria 67410
84 Ga0265316_10010615 3300031344 Bacteria 8378
85 Ga0265316_10065091 3300031344 Bacteria 2823
86 Ga0265316_10095438 3300031344 Bacteria 2265
87 Ga0307513_10005597 3300031456 Bacteria 16570
88 Ga0307509_10043008 3300031507 Bacteria 4890
89 Ga0307509_10217634 3300031507 Bacteria 1727
90 Ga0307408_100000072 3300031548 Bacteria 115918
91 Ga0307514_10001987 3300031649 Bacteria 22228
92 Ga0316575_10004509 3300031665 Bacteria 4903
93 Ga0307516_10005938 3300031730 Bacteria 14442
94 Ga0307406_10041654 3300031901 Bacteria 2862
95 Ga0307412_10000860 3300031911 Bacteria 17491
96 Ga0307414_10008773 3300032004 Bacteria 5765
97 Ga0307411_10011101 3300032005 Bacteria 4841
98 Ga0373958_0002902 3300034819 Bacteria 2445
99 Ga0373928_0011746 3300035084 Bacteria 1739
100 Ga0316574_0004633 3300035398 Bacteria 7238
101 Ga0316581_0010530 3300037588 Bacteria 2567
102 Ga0451833_0964592 3300041491 Bacteria 1721
103 Ga0451577_0000137 3300042876 Bacteria 163955
104 Ga0451577_0001748 3300042876 Bacteria 27992
105 Ga0451577_0011437 3300042876 Bacteria 8397
106 Ga0451577_0083455 3300042876 Bacteria 2850
107 Ga0451577_0242894 3300042876 Bacteria 1629
108 Ga0453684_0000014 3300044712 Bacteria 993311
109 Ga0453684_0000063 3300044712 Bacteria 486079
110 Ga0453684_0000341 3300044712 Bacteria 194228
111 Ga0453684_0000623 3300044712 Bacteria 129254
112 Ga0453684_0006547 3300044712 Bacteria 22061
113 Ga0453684_0101351 3300044712 Bacteria 3523
114 Ga0451576_0000169 3300045051 Bacteria 164329
115 Ga0451576_0015394 3300045051 Bacteria 8471
116 Ga0451576_0361081 3300045051 Bacteria 1521
117 Ga0495620_0031307 3300046515 Bacteria 2439
118 Ga0495632_0008472 3300046519 Bacteria 6306
119 Ga0495654_0000336 3300046530 Bacteria 41176
120 Ga0495597_0000204 3300046542 Bacteria 54418
121 Ga0496102_0003021 3300048905 Bacteria 14248
122 Ga0496102_0313713 3300048905 Bacteria 1477
123 Ga0496109_0019934 3300048912 Bacteria 5919
124 Ga0496110_0012519 3300048913 Bacteria 6977
125 Ga0496111_0029586 3300048914 Bacteria 3891
126 Ga0496117_0072999 3300048920 Bacteria 2291
127 Ga0496121_0112536 3300048924 Bacteria 2073
128 Ga0496122_0038576 3300048925 Bacteria 3824
129 Ga0496122_0053003 3300048925 Bacteria 3062
130 Ga0496122_0069626 3300048925 Bacteria 2519
131 Ga0496123_0026638 3300048926 Bacteria 4325
132 Ga0496125_0016982 3300048928 Bacteria 6958
133 nmdc:mga0yw44_47702_c1 3300050492 Bacteria 2580
134 nmdc:mga0yw44_94993_c1 3300050492 Bacteria 1890
135 nmdc:mga0k408_71695_c1 3300050493 Bacteria 2023
136 nmdc:mga07m45_1110_c1 3300050496 Bacteria 12041
137 nmdc:mga07m45_144663_c1 3300050496 Bacteria 1378
138 nmdc:mga07m45_41052_c1 3300050496 Bacteria 2591
139 Ga0500641_0009582 3300053096 Bacteria 3483
140 Ga0500618_002066 3300053125 Bacteria 8066
141 Ga0500628_000796 3300053129 Bacteria 5621
142 Ga0500658_0048080 3300053134 Bacteria 1733
143 Ga0500619_000148 3300053154 Bacteria 17268
144 Ga0500587_000117 3300053739 Bacteria 7303
145 2919706039 2919704043 Bacteria 5560311
146 2511242831 2511231002 Bacteria 5042903
147 2548500447 2547132374 Bacteria 5530232
148 2587757147 2585428062 Bacteria 6842168
149 2643864553 2643221570 Bacteria 5103772
150 2643992835 2643221596 Bacteria 5006805
151 2644058245 2643221609 Bacteria 6756331
152 2644073298 2643221611 Bacteria 6820941
153 2644291758 2643221652 Bacteria 5140275
154 2644339753 2643221660 Bacteria 4208257
155 2644647006 2643221717 Bacteria 5676132
156 2722881558 2721755523 Bacteria 6430384
157 2738721781 2738541277 Bacteria 7458140
158 2738881953 2738541307 Bacteria 8606193
159 2739244414 2738543012 Bacteria 7115078
160 2739282145 2738543019 Bacteria 7459457
161 2816469845 2816332133 Bacteria 7249298
162 2939633997 2939631187 Bacteria 6118131
163 2945915092 2945909444 Bacteria 7065066
164 2945989498 2945984333 Bacteria 7358892
165 2990715132 2990710928 Bacteria 5002431
166 JGI24740J21852_10002575
167 JGI25155J39150_1000073
168 JGI25156J39149_1000609
169 JGI25154J39366_1000118
170 JGI25154J39366_1000258
171 JGI25157J39369_1000001
172 JGI25151J46595_10001868
173 rootH1_10066474
174 rootL2_10150718
175 Ga0065165_1028918
176 Ga0070677_10007563
177 Ga0068869_100063141
178 Ga0070669_100015464
179 Ga0070675_100007240
180 Ga0070674_100013055
181 Ga0070673_100078397
182 Ga0068867_100010126
183 Ga0068853_100053897
184 Ga0070672_100010723
185 Ga0070665_100054244
186 Ga0070665_100089626
187 Ga0068855_100048792
188 Ga0068854_100041728
189 Ga0068852_100148797
190 Ga0068864_100004658
191 Ga0068860_100177370
192 Ga0075365_10006251
193 Ga0075365_10028414
194 Ga0075362_10050869
195 Ga0075367_10051964
196 Ga0075367_10052965
197 Ga0075366_10015089
198 Ga0075366_10016585
199 Ga0075366_10037423
200 Ga0075366_10166163
201 Ga0075370_10083539
202 Ga0079104_1000058
203 Ga0105250_10005039
204 Ga0105243_10071409
205 Ga0105237_10028198
206 Ga0105238_10087544
207 Ga0157347_1002485
208 Ga0157370_10008304
209 Ga0157369_10011567
210 Ga0157380_10239614
211 Ga0182008_10006731
212 Ga0157379_10013872
213 Ga0157376_10014686
214 Ga0163161_10000312
215 Ga0209435_100001
216 Ga0207425_1000906
217 Ga0209646_1000001
218 Ga0209026_1000001
219 Ga0209759_1000001
220 Ga0209675_1005841
221 Ga0209025_1009402
222 Ga0209025_1011721
223 Ga0209025_1014606
224 Ga0209564_1001930
225 Ga0209758_1022718
226 Ga0209050_1010665
227 Ga0209257_1003358
228 Ga0207696_1006227
229 Ga0207682_10008136
230 Ga0207681_10011748
231 Ga0207650_10002095
232 Ga0207659_10011027
233 Ga0207709_10000380
234 Ga0207669_10011108
235 Ga0207704_10134310
236 Ga0207691_10001394
237 Ga0207667_10013425
238 Ga0207648_10001726
239 Ga0207683_10014138
240 Ga0207683_10021564
241 Ga0207698_10051936
242 Ga0209281_1000017
243 Ga0209966_1000007
244 Ga0268266_10044827
245 Ga0307515_10000109
246 Ga0307515_10003752
247 Ga0307512_10038035
248 Ga0265327_10000510
249 Ga0265316_10010615
250 Ga0265316_10065091
251 Ga0265316_10095438
252 Ga0307513_10005597
253 Ga0307509_10043008
254 Ga0307509_10217634
255 Ga0307408_100000072
256 Ga0307514_10001987
257 Ga0316575_10004509
258 Ga0307516_10005938
259 Ga0307406_10041654
260 Ga0307412_10000860
261 Ga0307414_10008773
262 Ga0307411_10011101
263 Ga0373958_0002902
264 Ga0373928_0011746
265 Ga0316574_0004633
266 Ga0316581_0010530
267 Ga0451833_0964592
268 Ga0451577_0000137
269 Ga0451577_0001748
270 Ga0451577_0011437
271 Ga0451577_0083455
272 Ga0451577_0242894
273 Ga0453684_0000014
274 Ga0453684_0000063
275 Ga0453684_0000341
276 Ga0453684_0000623
277 Ga0453684_0006547
278 Ga0453684_0101351
279 Ga0451576_0000169
280 Ga0451576_0015394
281 Ga0451576_0361081
282 Ga0495620_0031307
283 Ga0495632_0008472
284 Ga0495654_0000336
285 Ga0495597_0000204
286 Ga0496102_0003021
287 Ga0496102_0313713
288 Ga0496109_0019934
289 Ga0496110_0012519
290 Ga0496111_0029586
291 Ga0496117_0072999
292 Ga0496121_0112536
293 Ga0496122_0038576
294 Ga0496122_0053003
295 Ga0496122_0069626
296 Ga0496123_0026638
297 Ga0496125_0016982
298 nmdc:mga0yw44_47702_c1
299 nmdc:mga0yw44_94993_c1
300 nmdc:mga0k408_71695_c1
301 nmdc:mga07m45_1110_c1
302 nmdc:mga07m45_144663_c1
303 nmdc:mga07m45_41052_c1
304 Ga0500641_0009582
305 Ga0500618_002066
306 Ga0500628_000796
307 Ga0500658_0048080
308 Ga0500619_000148
309 Ga0500587_000117
310 2919706039
311 2511242831
312 2548500447
313 2587757147
314 2643864553
315 2643992835
316 2644058245
317 2644073298
318 2644291758
319 2644339753
320 2644647006
321 2722881558
322 2738721781
323 2738881953
324 2739244414
325 2739282145
326 2816469845
327 2939633997
328 2945915092
329 2945989498
330 2990715132

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13347

MFS_2

MFS/sugar transport protein

23

431

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
7oix-assembly1.cif.gz_B structure of thermostable human mfsd2a in complex with thermostable human sync2 0.8669 31 412
7l17-assembly1.cif.gz_A crystal structure of sugar-bound melibiose permease melb 0.8574 30 407
7n98-assembly1.cif.gz_A cryo-em structure of mfsd2a 0.8424 28 415
7oix-assembly1.cif.gz_B structure of thermostable human mfsd2a in complex with thermostable human sync2 0.7929 31 412
7n98-assembly1.cif.gz_A cryo-em structure of mfsd2a 0.7823 28 415
ID Description Score Start End Superfamily
af_F1R3C0_280_497_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9188 212 407 1.20.1250.20
af_P75683_225_430_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9059 212 407 1.20.1250.20
af_P0CE44_223_436_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.8985 210 406 1.20.1250.20
af_A0A0R4J720_312_542_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.8683 207 406 1.20.1250.20
af_E7FCM0_1_429_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.8649 50 406 1.20.1250.20
ID Description Score Start End GO Terms
AF-A0A4V2A9E1-F1-model_v4 deleted 0.9864 211 412
AF-A0A2E2WVF5-F1-model_v4 MFS transporter 0.9269 28 407 GO:0005886
GO:0008643
GO:0015293
AF-A0A4V2A9E1-F1-model_v4 deleted 0.9231 211 412
AF-A0A0U3SW45-F1-model_v4 deleted 0.8789 59 406
AF-A0A7R7TGF3-F1-model_v4 Major facilitator superfamily (MFS) profile domain-containing protein 0.8784 202 407 GO:0005886
GO:0008643
GO:0015293

Map