F247308

General Info

Members Datasets Scaffolds Average Seq Length
165 137 331 504

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2875391855|2875393650
Length 566
Sequence PPAPGAPSGPGPEAPAAVEPDPPGPRQLRMILIAVSVALMAVIASVSGLNVAQTELAVQFGASQSTVLWIINIYTLTLAALLLPLGAIGDRIGRKSMLMAGLAVFGAASVLAGLAPTAEIMLGARVLSGVGAAMIMPITLAVITSTFPEAERGRAIGVWTGVAGGGGIIGMFLSALLVDVASWRWLFVLPVVLVVVALAMTVRSVPDSRERTGHSFDTVGALTSVVAVTGLIFALQEGPEKGWAAPVTLSALAVGTLATAAFVARELRRRESALLDVRLFRERRLAGGSVTLLVVFGVQAGIAVVLFPFLQAVLGWSGLLSTLALMPMAVLMMLTSGLAPRLAARVGARTTVAAGVALGGTGLALMALFVSVGGGYPSILPGMVAMGLGMGLAMTPSTEAITAALPRERQGVASALNDVTREFGTALGVALLGALLSAGYRGAVDGRLDGIPEGAADAAREGVAHAVEAAGGAGPHRQALLDAAQRSFVDGWQQAMWAGVAVMAALLLLVLLRGPKSPVPGAPAPVPAQVVRAGTTARPTDRPGLPDRAADRPGSAPGSSPSRPTR

Samples

Sample ID Description Type Environment
1 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
5 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
8 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
9 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
10 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
11 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
12 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
13 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
14 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
15 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
16 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
17 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
18 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
19 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
20 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
21 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
22 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
23 3300015262 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-113_1 MetaG Metagenome Rhizosphere
24 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
34 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
36 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
37 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
38 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
39 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
40 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
41 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
42 3300041404 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216DE14Z070717_5272 Metagenome Rhizosphere
43 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
44 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
45 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
46 3300044683 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA3R Metagenome Rhizosphere
47 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
48 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
49 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
50 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
51 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
52 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
53 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
54 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
55 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
56 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
57 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
58 3300046679 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL2_50_4 rhizosphere Metagenome Rhizosphere
59 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
60 3300047320 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co2_68_28 rhizosphere Metagenome Rhizosphere
61 3300047321 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere Metagenome Rhizosphere
62 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
63 3300047443 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co3_24_32 rhizosphere Metagenome Rhizosphere
64 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
65 3300048089 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL3_84_27 rhizosphere Metagenome Rhizosphere
66 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
67 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
68 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
69 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
70 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
71 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
72 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
73 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
74 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
75 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
76 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
77 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
78 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
79 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
80 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
81 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
82 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
83 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
84 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
85 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
86 3300053117 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 endosphere Metagenome Endosphere
87 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
88 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere
89 2875391855 Streptomyces cavourensis 1AS2a Isolate Rhizosphere
90 2547132111 Streptomyces sp. TOR3209 Isolate Rhizosphere
91 2565956761 Rhodococcus qingshengii BKS 20-40 Isolate Rhizosphere
92 2588254257 Chryseobacterium sp. YR203 Isolate Rhizosphere
93 2643221635 Yonghaparkia sp. Root332 Isolate Unclassified
94 2643221692 Nocardia sp. Root136 Isolate Unclassified
95 2675903060 Nonomuraea wenchangensis CGMCC 4.5598 Isolate Rhizosphere
96 2728369107 Chryseobacterium kwangjuense KJ1R5 Isolate Unclassified
97 2738541308 Rhodococcus sp. OK551 Isolate Unclassified
98 2738543005 Rhodococcus sp. OK519 Isolate Unclassified
99 2738543011 Rhodococcus sp. OK611 Isolate Unclassified
100 2739367874 Chryseobacterium sp. T16E-39 Isolate Unclassified
101 2751185725 Microbispora sp. NRRL B-24597 Isolate Unclassified
102 2751185792 Kitasatospora arboriphila NRRL B-24581 Isolate Unclassified
103 2758568522 Promicromonospora thailandica SAI-039 Isolate Unclassified
104 2758568621 Promicromonospora sukumoe SAI-064 Isolate Unclassified
105 2767802112 Streptomyces avicenniae NRRL B-24776 Isolate Rhizosphere
106 2784132148 Streptomyces sp. E5N91 SAI-083 Isolate Unclassified
107 2791355406 Streptomyces rhizosphaericus NRRL B-24304 Isolate Unclassified
108 2808606375 Streptomyces sp. SLBN-31 Isolate Unclassified
109 2808606448 Streptomyces sp. 193411 Isolate Unclassified
110 2808606982 Streptomyces sp. SLBN-118 Isolate Unclassified
111 2856741275 Microbispora triticiradicis NEAU-HRDPA2-9 Isolate Unclassified
112 2862290372 Streptomyces triticagri NEAU-YY421 Isolate Rhizosphere
113 2867312974 Micromonospora musae NGC1-4 Isolate Unclassified
114 2867319477 Micromonospora musae MS1-9 Isolate Unclassified
115 2867369537 Streptomyces sp. Z26 Isolate Unclassified
116 2880489317 Micromonospora ureilytica DSM 101692 Isolate Unclassified
117 2891395885 Microbispora catharanthi CR1-09 Isolate Unclassified
118 2891562705 Microbispora tritici MT50 Isolate Unclassified
119 2891968417 Nocardioides luteus SAI-037 Isolate Unclassified
120 2904535858 Rhodococcus erythropolis 2017 Isolate Unclassified
121 2918501144 Streptomyces sp. PvR006 Isolate Rhizosphere
122 2922554459 Rhodococcus sp. 66b Isolate Unclassified
123 2928142448 Prescottella equi DPS 2018 Isolate Unclassified
124 2954721474 Streptomyces sp. SAI-117 Isolate Rhizosphere
125 2954731030 Streptomyces sp. SAI-133 Isolate Rhizosphere
126 2954740390 Streptomyces sp. SAI-041 Isolate Rhizosphere
127 2954759201 Streptomyces sp. SAI-208 Isolate Rhizosphere
128 8003314358 Amycolatopsis sp. MtRt-6 Isolate Unclassified
129 8023623736 Streptomyces sp. 111WW2 Isolate Unclassified
130 8025530807 Streptomyces sp. 4R-3d Isolate Unclassified
131 8047710418 Umezawaea endophytica DSM 103496 Isolate Unclassified
132 8047893842 Streptomyces cangkringensis DSM 41769 Isolate Rhizosphere
133 8048127548 Streptomyces samsunensis DSM 42010 Isolate Rhizosphere
134 8048369669 Streptomyces indonesiensis DSM 41759 Isolate Rhizoplane
135 8048379754 Streptomyces asiaticus DSM 41761 Isolate Rhizosphere
136 8048406513 Streptomyces heilongjiangensis NEAU-W2 Isolate Unclassified
137 8056054917 Glycomyces luteolus NEAU-A15 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 69.09
Metatranscriptomes 0
Isolates 30.91

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.03
Nodule 0
Rhizoplane 1.21
Rhizosphere 69.7
Stem 0
Stem Tuber 0
Unclassified 0.61

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10004194 3300003203 Bacteria 6726
2 rootL2_10023280 3300003322 Bacteria 25020
3 rootL2_10050078 3300003322 Bacteria 5245
4 rootL2_10090938 3300003322 Bacteria 10010
5 rootH1_10026394 3300003316 Bacteria 2161
6 rootH1_10026394 3300003323 Bacteria 11193
7 rootH1_10027899 3300003323 Bacteria 70239
8 rootH1_10051725 3300003323 Bacteria 2851
9 rootH1_10102950 3300003323 Bacteria 15099
10 rootH1_10330792 3300003323 Bacteria 2952
11 Ga0070683_100009214 3300005329 Bacteria 8432
12 Ga0070668_100000248 3300005347 Bacteria 35756
13 Ga0070714_100084123 3300005435 Bacteria 2776
14 Ga0070701_10047747 3300005438 Bacteria 2206
15 Ga0070700_100002421 3300005441 Bacteria 9513
16 Ga0070684_100000358 3300005535 Bacteria 31418
17 Ga0070684_100001716 3300005535 Bacteria 15961
18 Ga0070684_100057821 3300005535 Bacteria 3387
19 Ga0068855_100063734 3300005563 Bacteria 4300
20 Ga0068857_100000065 3300005577 Bacteria 59032
21 Ga0068854_100028920 3300005578 Bacteria 3833
22 Ga0068858_100131264 3300005842 Bacteria 2349
23 Ga0068862_100071266 3300005844 Bacteria 3001
24 Ga0081455_10016171 3300005937 Bacteria 7212
25 Ga0081539_10000137 3300005985 Bacteria 171821
26 Ga0075370_10057198 3300006353 Bacteria 2216
27 Ga0075430_100023232 3300006846 Bacteria 5275
28 Ga0105240_10058415 3300009093 Bacteria 4816
29 Ga0111539_10011905 3300009094 Bacteria 10906
30 Ga0105241_10058598 3300009174 Bacteria 2958
31 Ga0105246_10115781 3300011119 Unclassified 1978
32 Ga0182007_10004406 3300015262 Bacteria 6383
33 Ga0207695_10013800 3300025913 Bacteria 9612
34 Ga0207671_10014000 3300025914 Bacteria 6363
35 Ga0207694_10021388 3300025924 Bacteria 4902
36 Ga0207661_10006133 3300025944 Bacteria 8493
37 Ga0207667_10179267 3300025949 Bacteria 2176
38 Ga0207668_10001364 3300025972 Bacteria 14427
39 Ga0207640_10035077 3300025981 Bacteria 3136
40 Ga0207708_10001972 3300026075 Bacteria 15141
41 Ga0207674_10000966 3300026116 Bacteria 37603
42 Ga0207428_10025769 3300027907 Bacteria 4917
43 Ga0268266_10072218 3300028379 Bacteria 2992
44 Ga0307513_10016190 3300031456 Bacteria 9007
45 Ga0307516_10004801 3300031730 Bacteria 16469
46 Ga0307410_10021903 3300031852 Bacteria 3940
47 Ga0307409_100017417 3300031995 Bacteria 4789
48 Ga0307416_100019005 3300032002 Bacteria 4860
49 Ga0307416_100041590 3300032002 Bacteria 3581
50 Ga0307415_100004073 3300032126 Bacteria 7541
51 Ga0307415_100010155 3300032126 Bacteria 5318
52 Ga0395901_0211460 3300038443 Bacteria 2030
53 Ga0439436_0010767 3300041404 Bacteria 2786
54 Ga0439439_0001696 3300041406 Bacteria 4478
55 Ga0439449_0006513 3300042007 Bacteria 4462
56 Ga0466972_0021462 3300044658 Bacteria 3218
57 Ga0466965_0019711 3300044683 Bacteria 3239
58 Ga0466963_0000427 3300044694 Bacteria 19396
59 Ga0466963_0061490 3300044694 Bacteria 2511
60 Ga0466964_0021154 3300044706 Bacteria 2514
61 Ga0466970_0051958 3300044765 Bacteria 2188
62 Ga0466967_0023210 3300045976 Bacteria 5080
63 Ga0466967_0032184 3300045976 Bacteria 4425
64 Ga0466967_0256545 3300045976 Bacteria 1672
65 Ga0495592_0017442 3300046454 Bacteria 5455
66 Ga0495603_0000269 3300046455 Bacteria 27503
67 Ga0495629_0000773 3300046459 Bacteria 25837
68 Ga0495629_0034443 3300046459 Bacteria 3580
69 Ga0495580_0107626 3300046472 Bacteria 1936
70 Ga0495606_0033385 3300046507 Bacteria 3550
71 Ga0495665_0027688 3300046531 Bacteria 3041
72 Ga0495657_0061552 3300046675 Bacteria 2482
73 Ga0495623_0031941 3300046679 Bacteria 3385
74 Ga0495613_0004618 3300046689 Bacteria 10339
75 Ga0495672_0002918 3300047320 Bacteria 15115
76 Ga0495676_0026092 3300047321 Bacteria 5034
77 Ga0495676_0045283 3300047321 Bacteria 3582
78 Ga0495676_0142783 3300047321 Bacteria 1714
79 Ga0495680_0035681 3300047322 Bacteria 4003
80 Ga0495687_040976 3300047443 Bacteria 2036
81 Ga0495593_0009417 3300047673 Bacteria 5667
82 Ga0495593_0086727 3300047673 Bacteria 1614
83 Ga0495614_0010104 3300048089 Bacteria 4166
84 Ga0495614_0021552 3300048089 Bacteria 2782
85 Ga0496109_0012836 3300048912 Bacteria 7241
86 Ga0501032_0057039 3300049569 Bacteria 2624
87 Ga0501033_0136794 3300049570 Bacteria 1772
88 Ga0501034_0005981 3300049571 Bacteria 13161
89 Ga0501034_0014848 3300049571 Bacteria 8013
90 Ga0501034_0047772 3300049571 Bacteria 4321
91 Ga0501036_0014197 3300049572 Bacteria 6626
92 Ga0501038_0171194 3300049574 Bacteria 1758
93 Ga0501043_0015368 3300049579 Bacteria 5995
94 Ga0501046_0002356 3300049580 Bacteria 17798
95 Ga0501046_0090634 3300049580 Bacteria 2352
96 Ga0501047_0015466 3300049581 Bacteria 7271
97 Ga0501047_0038246 3300049581 Bacteria 4642
98 Ga0501047_0156959 3300049581 Bacteria 2149
99 Ga0501048_0001625 3300049582 Bacteria 17103
100 Ga0501067_0003751 3300049583 Bacteria 8370
101 Ga0501069_0015104 3300049585 Bacteria 4136
102 Ga0501070_0106175 3300049586 Bacteria 2321
103 Ga0501035_0001861 3300049822 Bacteria 21258
104 Ga0501035_0027325 3300049822 Bacteria 5215
105 Ga0501044_0000150 3300049823 Bacteria 85886
106 Ga0501044_0019306 3300049823 Bacteria 7294
107 Ga0501044_0074723 3300049823 Bacteria 3442
108 nmdc:mga00v17_113701_c1 3300050491 Bacteria 1719
109 nmdc:mga0yw44_1128_c1 3300050492 Bacteria 10325
110 nmdc:mga08y16_21078_c1 3300050511 Bacteria 6881
111 nmdc:mga0n895_33822_c1 3300050512 Bacteria 4915
112 nmdc:mga08x19_7148_c1 3300050514 Bacteria 6630
113 Ga0500593_000009 3300053117 Bacteria 69532
114 Ga0500616_0001120 3300053153 Bacteria 27623
115 Ga0530510_0064210 3300061734 Bacteria 2659
116 2875393650 2875391855 Bacteria 7600475
117 2547412017 2547132111 Bacteria 8013147
118 2566995056 2565956761 Bacteria 6601618
119 2590611779 2588254257 Bacteria 5436094
120 2644199525 2643221635 Bacteria 2632343
121 2644511628 2643221692 Bacteria 7282860
122 2676494185 2675903060 Bacteria 10051191
123 2729199427 2728369107 Bacteria 5082720
124 2738893015 2738541308 Bacteria 7020677
125 2739205994 2738543005 Bacteria 5278128
126 2739239583 2738543011 Bacteria 5731169
127 2740057748 2739367874 Bacteria 4872888
128 2753039514 2751185725 Bacteria 5740550
129 2753328023 2751185792 Bacteria 5739090
130 2760303887 2758568522 Bacteria 5953541
131 2760622177 2758568621 Bacteria 5967089
132 2768647704 2767802112 Bacteria 6465194
133 2784592699 2784132148 Bacteria 8627943
134 2793978761 2791355406 Bacteria 11364898
135 2808917272 2808606375 Bacteria 9466072
136 2809236330 2808606448 Bacteria 8656184
137 2811845891 2808606982 Bacteria 7791042
138 2856742360 2856741275 Bacteria 8096094
139 2862292950 2862290372 Bacteria 7471434
140 2867317529 2867312974 Bacteria 7058875
141 2867325237 2867319477 Bacteria 7069771
142 2867370138 2867369537 Bacteria 6501581
143 2880495291 2880489317 Bacteria 7096270
144 2891397622 2891395885 Bacteria 9251614
145 2891569848 2891562705 Bacteria 8039471
146 2891968824 2891968417 Bacteria 5821697
147 2904537411 2904535858 Bacteria 6308016
148 2918502043 2918501144 Bacteria 8668083
149 2922558965 2922554459 Bacteria 6683962
150 2928143749 2928142448 Bacteria 5288925
151 2954727404 2954721474 Bacteria 10456478
152 2954740225 2954731030 Bacteria 10243860
153 2954740507 2954740390 Bacteria 10229294
154 2954766764 2954759201 Bacteria 9358192
155 8003316053 8003314358 Bacteria 10575343
156 8023626686 8023623736 Bacteria 8593882
157 8025537877 8025530807 Bacteria 8495698
158 8047712126 8047710418 Bacteria 11023148
159 8047902061 8047893842 Bacteria 11723082
160 8048129180 8048127548 Bacteria 11053136
161 8048131845 8048127548 Bacteria 11053136
162 8048369857 8048369669 Bacteria 11666822
163 8048389486 8048379754 Bacteria 11877923
164 8048407902 8048406513 Bacteria 8936924
165 8048413401 8048406513 Bacteria 8936924
166 8056058302 8056054917 Bacteria 5736694
167 JGI25406J46586_10004194
168 rootL2_10023280
169 rootL2_10050078
170 rootL2_10090938
171 rootH1_10026394
172 rootH1_10027899
173 rootH1_10051725
174 rootH1_10102950
175 rootH1_10330792
176 Ga0070683_100009214
177 Ga0070668_100000248
178 Ga0070714_100084123
179 Ga0070701_10047747
180 Ga0070700_100002421
181 Ga0070684_100000358
182 Ga0070684_100001716
183 Ga0070684_100057821
184 Ga0068855_100063734
185 Ga0068857_100000065
186 Ga0068854_100028920
187 Ga0068858_100131264
188 Ga0068862_100071266
189 Ga0081455_10016171
190 Ga0081539_10000137
191 Ga0075370_10057198
192 Ga0075430_100023232
193 Ga0105240_10058415
194 Ga0111539_10011905
195 Ga0105241_10058598
196 Ga0105246_10115781
197 Ga0182007_10004406
198 Ga0207695_10013800
199 Ga0207671_10014000
200 Ga0207694_10021388
201 Ga0207661_10006133
202 Ga0207667_10179267
203 Ga0207668_10001364
204 Ga0207640_10035077
205 Ga0207708_10001972
206 Ga0207674_10000966
207 Ga0207428_10025769
208 Ga0268266_10072218
209 Ga0307513_10016190
210 Ga0307516_10004801
211 Ga0307410_10021903
212 Ga0307409_100017417
213 Ga0307416_100019005
214 Ga0307416_100041590
215 Ga0307415_100004073
216 Ga0307415_100010155
217 Ga0395901_0211460
218 Ga0439436_0010767
219 Ga0439439_0001696
220 Ga0439449_0006513
221 Ga0466972_0021462
222 Ga0466965_0019711
223 Ga0466963_0000427
224 Ga0466963_0061490
225 Ga0466964_0021154
226 Ga0466970_0051958
227 Ga0466967_0023210
228 Ga0466967_0032184
229 Ga0466967_0256545
230 Ga0495592_0017442
231 Ga0495603_0000269
232 Ga0495629_0000773
233 Ga0495629_0034443
234 Ga0495580_0107626
235 Ga0495606_0033385
236 Ga0495665_0027688
237 Ga0495657_0061552
238 Ga0495623_0031941
239 Ga0495613_0004618
240 Ga0495672_0002918
241 Ga0495676_0026092
242 Ga0495676_0045283
243 Ga0495676_0142783
244 Ga0495680_0035681
245 Ga0495687_040976
246 Ga0495593_0009417
247 Ga0495593_0086727
248 Ga0495614_0010104
249 Ga0495614_0021552
250 Ga0496109_0012836
251 Ga0501032_0057039
252 Ga0501033_0136794
253 Ga0501034_0005981
254 Ga0501034_0014848
255 Ga0501034_0047772
256 Ga0501036_0014197
257 Ga0501038_0171194
258 Ga0501043_0015368
259 Ga0501046_0002356
260 Ga0501046_0090634
261 Ga0501047_0015466
262 Ga0501047_0038246
263 Ga0501047_0156959
264 Ga0501048_0001625
265 Ga0501067_0003751
266 Ga0501069_0015104
267 Ga0501070_0106175
268 Ga0501035_0001861
269 Ga0501035_0027325
270 Ga0501044_0000150
271 Ga0501044_0019306
272 Ga0501044_0074723
273 nmdc:mga00v17_113701_c1
274 nmdc:mga0yw44_1128_c1
275 nmdc:mga08y16_21078_c1
276 nmdc:mga0n895_33822_c1
277 nmdc:mga08x19_7148_c1
278 Ga0500593_000009
279 Ga0500616_0001120
280 Ga0530510_0064210
281 2875393650
282 2547412017
283 2566995056
284 2590611779
285 2644199525
286 2644511628
287 2676494185
288 2729199427
289 2738893015
290 2739205994
291 2739239583
292 2740057748
293 2753039514
294 2753328023
295 2760303887
296 2760622177
297 2768647704
298 2784592699
299 2793978761
300 2808917272
301 2809236330
302 2811845891
303 2856742360
304 2862292950
305 2867317529
306 2867325237
307 2867370138
308 2880495291
309 2891397622
310 2891569848
311 2891968824
312 2904537411
313 2918502043
314 2922558965
315 2928143749
316 2954727404
317 2954740225
318 2954740507
319 2954766764
320 8003316053
321 8023626686
322 8025537877
323 8047712126
324 8047902061
325 8048129180
326 8048131845
327 8048369857
328 8048389486
329 8048407902
330 8048413401
331 8056058302

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00083

Sugar_tr

Sugar (and other) transporter

30

210

0.84

PF07690

MFS_1

Major Facilitator Superfamily

33

429

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
7y58-assembly1.cif.gz_A cryoem structure of qaca (d411n), an antibacterial efflux transporter from staphylococcus aureus 0.9007 1 443
7y58-assembly1.cif.gz_A cryoem structure of qaca (d411n), an antibacterial efflux transporter from staphylococcus aureus 0.8785 1 443
8pnl-assembly1.cif.gz_A outward-open conformation of a major facilitator superfamily (mfs) transporter mhas2168, a homologue of rv1410 from m. tuberculosis, in complex with an alpaca nanobody 0.7908 11 439
8pnl-assembly2.cif.gz_C outward-open conformation of a major facilitator superfamily (mfs) transporter mhas2168, a homologue of rv1410 from m. tuberculosis, in complex with an alpaca nanobody 0.7708 11 437
7d5p-assembly2.cif.gz_B structure of norc transporter in an outward-open conformation in complex with a single-chain indian camelid antibody 0.7549 16 441
ID Description Score Start End Superfamily
af_P9WG87_21_208_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.973 18 200 1.20.1250.20
af_P36554_12_217_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9588 18 215 1.20.1250.20
af_P76269_18_258_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9548 18 254 1.20.1250.20
af_P9WG85_29_254_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.9512 16 237 1.20.1250.20
af_P9WG89_46_282_1.20.1250.20 Mainly Alpha;Up-down Bundle;Growth Hormone; Chain: A;;MFS general substrate transporter like domains 0.95 19 247 1.20.1250.20
ID Description Score Start End GO Terms
AF-A0A537NMT5-F1-model_v4 MFS transporter 0.9626 15 164 GO:0005886
GO:0022857
AF-A0A7W5D9E1-F1-model_v4 MFS family permease 0.9603 5 210 GO:0016020
GO:0022857
AF-A0A520EWA9-F1-model_v4 MFS transporter 0.9477 8 167 GO:0016020
GO:0022857
AF-A0A5C7XKH6-F1-model_v4 MFS transporter 0.9439 12 224 GO:0016020
GO:0022857
AF-A0A3D5J5P7-F1-model_v4 Major facilitator superfamily (MFS) profile domain-containing protein 0.9397 15 182 GO:0005886
GO:0022857

Map