F247070

General Info

Members Datasets Scaffolds Average Seq Length
165 87 164 1069

Family's Representative Sequence

Representative Sequence 3300049568|Ga0501031_0000149|Ga0501031_0000149_28060_31647
Length 1120
Sequence MLTRIIDFSLKNKFIVVLMTLALVLSGVYAVRHIPLDAIPDLSDTQVIIYTPWEGQAPNIIEDQVTYPITTKMLSVPRAKVVRGYSFYGYSFVYVIFDDGTDPYWARSRVLEYLSSLSGQLPKGVNPSLGPDATGVGWAFMYSINSTNRNLADLRSMQDWYLKYQLTAVPGVSEVASIGGFVKQYQVTVDPAKLRAYNLSLQDVSQAIKRSNGEVGGRSIELSEREFILRVKGYIQNLKDLKEVAVGVGKDGVPILLRDVANIQFGPDMRRGIADLNGDGETVGGIVIVRSGANAYQVIQAAKQRLAAAMKALPPDVKATVVYDRTALIDRAVKTLEEKLLEESIVVALVCLAFLLHLRSALVAIVILPVAVLISFLIMFGQGISSNIMSLGGIAIAIGAMVDAVIIMIENAHKHLERDQGKKPHWQIIRDASVEVGPALFYSLLVITVSFLPVFTLQEQEGRLFKPLAFTKTYSMGAAALLSITLAPVLMGWFIRGRIPKEETNPINRLLIWLYHPLVNWAIKFRWWVVIGAGVLVGWVFFPWNQVVLKHLPEQAVASVYRPMNMEMVGRAPRIAQTTWRTSLRNAATSIGRLFPFQNLGSEFMPPLYEGDLLYMPTTFPGISPTKARELVQVTDRIIKSFPEVQSVFGKAGRADTATDPAPMDMIESTIRLKPESAWPAVDIQDANDNVIAHRKRTPDELVDALNAAVQIPGLNNAWTMPIRTRIDMLSTGIKTPVGIKIAGPDLVTLQQIGEQVEAVVRNVPGTASAYAERVMGGRYIEFNIKRDAIARYGLTIGDVQDVLSVALGGMPLTTTVEGLQRYTVNLRYDRDFRSDLHALKHDIVIPTPTGAQIPLGELADIKVVDGPMSIKTEGAVPNDWVYVDIQGIDVGTYVQNAMHAVNAAVAAGQIKLPPGYNIFWSGQYEYMLRAKQRLLIVVPLTLFIIALILYLNTKSLIKTAIVLLAVPFSLVGAFWALYLLHYNLSVAVWVGIIALAGLDAETGVIMLLYLDLAFADWKQNGRMRNVDDLRLAIHEGAVKRVRPKIMTATVIIAALTPILWSHGAGADVMKRIAAPMVGGVITSTIMELAVYPAIYFLWRGRQIRTDGASKGKAGFIAAA

Samples

Sample ID Description Type Environment
1 2786546940 Opitutaceae bacterium EW11 Isolate Unclassified
2 3300001991 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2 Metagenome Rhizosphere
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
5 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
6 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
7 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
8 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
9 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
10 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
11 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
12 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
13 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
14 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
15 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
16 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
17 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
18 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
19 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
20 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
21 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
27 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
28 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
29 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
30 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
31 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
32 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
33 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
34 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
35 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
36 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
37 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
38 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
39 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
40 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
41 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
42 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
43 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
44 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
45 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
46 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
47 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
48 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
49 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
50 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
51 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
52 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
53 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
54 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
55 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
56 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
57 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
58 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
59 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
60 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
61 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
62 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
63 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
64 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
65 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
66 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
67 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
68 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
69 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
70 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
71 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
72 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
73 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
74 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
75 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
76 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
77 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
78 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
79 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
80 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
81 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
84 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
85 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
86 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
87 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.39
Metatranscriptomes 0
Isolates 0.61

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.61
Rhizosphere 97.58
Stem 0
Stem Tuber 0
Unclassified 1.82

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI24743J22301_10000088 3300001991 Bacteria 8843
2 rootH2_10052823 3300003320 Bacteria 13984
3 rootH1_10004954 3300003323 Bacteria 22789
4 Ga0065704_10004801 3300005289 Bacteria 6725
5 Ga0065712_10074807 3300005290 Bacteria 4005
6 Ga0070683_100001044 3300005329 Bacteria 20817
7 Ga0070690_100009241 3300005330 Bacteria 5705
8 Ga0070711_100001798 3300005439 Bacteria 11951
9 Ga0068855_100021451 3300005563 Bacteria 7745
10 Ga0068857_100027085 3300005577 Bacteria 5056
11 Ga0068856_100001761 3300005614 Bacteria 22655
12 Ga0068856_100038583 3300005614 Bacteria 4689
13 Ga0070717_10000104 3300006028 Bacteria 66513
14 Ga0097621_100006140 3300006237 Bacteria 8509
15 Ga0075428_100052858 3300006844 Bacteria 4451
16 Ga0105238_10005447 3300009551 Bacteria 12572
17 Ga0157378_10002996 3300013297 Bacteria 15012
18 Ga0157378_10018227 3300013297 Bacteria 6162
19 Ga0157378_10041986 3300013297 Bacteria 4058
20 Ga0163162_10012323 3300013306 Bacteria 8349
21 Ga0157375_10000006 3300013308 Bacteria 384086
22 Ga0157375_10000243 3300013308 Bacteria 50190
23 Ga0163163_10000702 3300014325 Bacteria 28447
24 Ga0207663_10001120 3300025916 Bacteria 12326
25 Ga0207649_10004233 3300025920 Bacteria 7818
26 Ga0207694_10004975 3300025924 Bacteria 10288
27 Ga0207644_10001326 3300025931 Bacteria 15898
28 Ga0207661_10020965 3300025944 Bacteria 4894
29 Ga0207702_10001963 3300026078 Bacteria 20027
30 Ga0207702_10005192 3300026078 Bacteria 11447
31 Ga0207702_10016381 3300026078 Bacteria 6136
32 Ga0207641_10004540 3300026088 Bacteria 12001
33 Ga0207674_10038442 3300026116 Bacteria 4966
34 Ga0265337_1000359 3300028556 Bacteria 24390
35 Ga0265337_1000594 3300028556 Bacteria 19024
36 Ga0265319_1000512 3300028563 Bacteria 26747
37 Ga0265319_1000679 3300028563 Bacteria 22186
38 Ga0265334_10001896 3300028573 Bacteria 9906
39 Ga0265323_10000224 3300028653 Bacteria 33270
40 Ga0265323_10000253 3300028653 Bacteria 31506
41 Ga0265323_10000465 3300028653 Bacteria 22900
42 Ga0265323_10000584 3300028653 Bacteria 20107
43 Ga0265323_10002055 3300028653 Bacteria 9443
44 Ga0265323_10003868 3300028653 Bacteria 6519
45 Ga0265323_10006167 3300028653 Bacteria 5056
46 Ga0265322_10000168 3300028654 Bacteria 30155
47 Ga0265336_10000281 3300028666 Bacteria 35708
48 Ga0265336_10000775 3300028666 Bacteria 16930
49 Ga0265338_10000261 3300028800 Bacteria 96027
50 Ga0265338_10000330 3300028800 Bacteria 86006
51 Ga0265338_10000867 3300028800 Bacteria 51308
52 Ga0265338_10000985 3300028800 Bacteria 48005
53 Ga0265338_10001023 3300028800 Bacteria 46910
54 Ga0265338_10001502 3300028800 Bacteria 37738
55 Ga0265338_10001684 3300028800 Bacteria 35127
56 Ga0265338_10002439 3300028800 Bacteria 27934
57 Ga0265338_10002748 3300028800 Bacteria 25798
58 Ga0265338_10004776 3300028800 Bacteria 18112
59 Ga0265338_10006473 3300028800 Bacteria 14919
60 Ga0265338_10008031 3300028800 Bacteria 12908
61 Ga0265338_10012845 3300028800 Bacteria 9517
62 Ga0265338_10013536 3300028800 Bacteria 9197
63 Ga0265338_10018665 3300028800 Bacteria 7410
64 Ga0265324_10000884 3300029957 Bacteria 19086
65 Ga0265324_10001724 3300029957 Bacteria 12021
66 Ga0265324_10001764 3300029957 Bacteria 11871
67 Ga0265324_10004677 3300029957 Bacteria 6092
68 Ga0265324_10007963 3300029957 Bacteria 4247
69 Ga0265330_10001969 3300031235 Bacteria 11401
70 Ga0265330_10012736 3300031235 Bacteria 3927
71 Ga0265332_10000475 3300031238 Bacteria 27774
72 Ga0265320_10000393 3300031240 Bacteria 35365
73 Ga0265320_10002476 3300031240 Bacteria 12855
74 Ga0265320_10005476 3300031240 Bacteria 8138
75 Ga0265329_10000571 3300031242 Bacteria 19070
76 Ga0265329_10001189 3300031242 Bacteria 12756
77 Ga0265340_10000309 3300031247 Bacteria 25713
78 Ga0265340_10009665 3300031247 Bacteria 5169
79 Ga0265339_10000645 3300031249 Bacteria 26938
80 Ga0265327_10001835 3300031251 Bacteria 24754
81 Ga0265327_10002717 3300031251 Bacteria 18094
82 Ga0265316_10000439 3300031344 Bacteria 47239
83 Ga0265316_10005662 3300031344 Bacteria 12092
84 Ga0265316_10021043 3300031344 Bacteria 5534
85 Ga0265313_10003125 3300031595 Bacteria 13677
86 Ga0265313_10004122 3300031595 Bacteria 11301
87 Ga0265314_10000050 3300031711 Bacteria 189257
88 Ga0265314_10001102 3300031711 Bacteria 31150
89 Ga0265314_10001223 3300031711 Bacteria 29432
90 Ga0265314_10004045 3300031711 Bacteria 13851
91 Ga0265314_10017048 3300031711 Bacteria 5711
92 Ga0265342_10000142 3300031712 Bacteria 80728
93 Ga0265342_10003725 3300031712 Bacteria 12342
94 Ga0265342_10005653 3300031712 Bacteria 9463
95 Ga0373928_0000013 3300035084 Bacteria 30263
96 Ga0373944_0000254 3300035089 Bacteria 11783
97 Ga0373949_0002542 3300035090 Bacteria 4640
98 Ga0373951_0000765 3300035091 Bacteria 8807
99 Ga0373932_0000001 3300035112 Bacteria 1459067
100 Ga0373962_0000080 3300035242 Bacteria 21234
101 Ga0373931_0000002 3300035691 Bacteria 599830
102 Ga0373937_0050536 3300036401 Bacteria 3808
103 Ga0373925_0000497 3300037068 Bacteria 39608
104 Ga0373925_0008991 3300037068 Bacteria 7278
105 Ga0395899_0000039 3300037312 Bacteria 269620
106 Ga0395898_0000135 3300037466 Bacteria 191321
107 Ga0451577_0000465 3300042876 Bacteria 70232
108 Ga0451577_0000731 3300042876 Bacteria 50882
109 Ga0451577_0003476 3300042876 Bacteria 17520
110 Ga0453683_0005472 3300044673 Bacteria 8861
111 Ga0453684_0000255 3300044712 Bacteria 229708
112 Ga0453684_0000287 3300044712 Bacteria 216926
113 Ga0453684_0000954 3300044712 Bacteria 95326
114 Ga0453684_0001383 3300044712 Bacteria 70232
115 Ga0453684_0005062 3300044712 Bacteria 26701
116 Ga0453684_0009754 3300044712 Bacteria 16675
117 Ga0453684_0015814 3300044712 Bacteria 11866
118 Ga0453684_0028120 3300044712 Bacteria 8038
119 Ga0453684_0065824 3300044712 Bacteria 4619
120 Ga0466971_0000008 3300044719 Bacteria 108703
121 Ga0466957_0017921 3300044842 Bacteria 4154
122 Ga0451576_0000052 3300045051 Bacteria 310414
123 Ga0451576_0001234 3300045051 Bacteria 45220
124 Ga0451576_0001552 3300045051 Bacteria 38712
125 Ga0451576_0001653 3300045051 Bacteria 37053
126 Ga0451576_0003157 3300045051 Bacteria 23064
127 Ga0451576_0005536 3300045051 Bacteria 15775
128 Ga0451576_0009561 3300045051 Bacteria 11227
129 Ga0451576_0015965 3300045051 Bacteria 8300
130 Ga0451576_0016953 3300045051 Bacteria 8023
131 Ga0495630_0000877 3300046517 Bacteria 21100
132 Ga0495666_0002918 3300046526 Bacteria 8561
133 Ga0495640_0035569 3300046533 Bacteria 3525
134 Ga0495586_0000441 3300046535 Bacteria 24974
135 Ga0495613_0016462 3300046689 Bacteria 5506
136 Ga0495674_0002856 3300047319 Bacteria 16776
137 Ga0495680_0009594 3300047322 Bacteria 8694
138 Ga0496115_0006136 3300048918 Bacteria 8786
139 Ga0501031_0000149 3300049568 Bacteria 39446
140 Ga0501031_0000727 3300049568 Bacteria 19729
141 Ga0501032_0000126 3300049569 Bacteria 62689
142 Ga0501033_0000187 3300049570 Bacteria 59491
143 Ga0501033_0000258 3300049570 Bacteria 50919
144 Ga0501033_0001003 3300049570 Bacteria 25696
145 Ga0501033_0002665 3300049570 Bacteria 14997
146 Ga0501033_0004306 3300049570 Bacteria 11427
147 Ga0501034_0031994 3300049571 Bacteria 5344
148 Ga0501037_0000002 3300049573 Bacteria 292291
149 Ga0501038_0001318 3300049574 Bacteria 22583
150 Ga0501038_0002865 3300049574 Bacteria 16067
151 Ga0501038_0019916 3300049574 Bacteria 6039
152 Ga0501039_0007020 3300049575 Bacteria 8574
153 Ga0501043_0000716 3300049579 Bacteria 29389
154 Ga0501043_0001585 3300049579 Bacteria 19755
155 Ga0501046_0015353 3300049580 Bacteria 6439
156 Ga0501047_0044370 3300049581 Bacteria 4296
157 Ga0501070_0005629 3300049586 Bacteria 10685
158 Ga0501083_0001533 3300049744 Bacteria 15790
159 Ga0501035_0000007 3300049822 Bacteria 359281
160 Ga0501035_0007726 3300049822 Bacteria 10041
161 Ga0501044_0000281 3300049823 Bacteria 64762
162 Ga0501044_0000836 3300049823 Bacteria 36930
163 Ga0501044_0011124 3300049823 Bacteria 9759
164 Ga0466962_0000004 3300061719 Bacteria 179133

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300046533 Ga0495640_0035569 Ga0495640_0035569_58_2910 919
2 3300049823 Ga0501044_0011124 Ga0501044_0011124_5479_8385 923
3 3300036401 Ga0373937_0050536 Ga0373937_0050536_834_3785 955
4 3300006844 Ga0075428_100052858 Ga0075428_1000528582 994
5 3300003320 rootH2_10052823 rootH2_100528235 997
6 3300031595 Ga0265313_10004122 Ga0265313_1000412210 1005
7 3300031711 Ga0265314_10004045 Ga0265314_1000404510 1005
8 3300044712 Ga0453684_0000954 Ga0453684_0000954_52770_55889 1005
9 3300044712 Ga0453684_0028120 Ga0453684_0028120_26_3103 1005
10 3300028653 Ga0265323_10000253 Ga0265323_1000025321 1006
11 3300031712 Ga0265342_10005653 Ga0265342_100056533 1006
12 3300028556 Ga0265337_1000359 Ga0265337_10003597 1007
13 3300028666 Ga0265336_10000775 Ga0265336_100007756 1007
14 3300028800 Ga0265338_10004776 Ga0265338_1000477614 1007
15 3300037068 Ga0373925_0008991 Ga0373925_0008991_3493_6741 1009
16 3300028800 Ga0265338_10000330 Ga0265338_1000033051 1010
17 3300028653 Ga0265323_10000465 Ga0265323_1000046512 1013
18 3300044712 Ga0453684_0005062 Ga0453684_0005062_1734_4991 1020
19 3300044712 Ga0453684_0000255 Ga0453684_0000255_113779_117069 1023
20 3300044712 Ga0453684_0065824 Ga0453684_0065824_258_3632 1030
21 3300005577 Ga0068857_100027085 Ga0068857_1000270852 1033
22 3300026116 Ga0207674_10038442 Ga0207674_100384422 1033
23 3300029957 Ga0265324_10001764 Ga0265324_100017645 1033
24 3300031240 Ga0265320_10005476 Ga0265320_100054763 1033
25 3300031711 Ga0265314_10001223 Ga0265314_100012232 1033
26 3300045051 Ga0451576_0001234 Ga0451576_0001234_27029_30169 1033
27 3300028556 Ga0265337_1000594 Ga0265337_100059410 1034
28 3300028563 Ga0265319_1000512 Ga0265319_100051222 1034
29 3300028563 Ga0265319_1000679 Ga0265319_10006799 1034
30 3300028573 Ga0265334_10001896 Ga0265334_100018967 1034
31 3300028653 Ga0265323_10000584 Ga0265323_1000058416 1034
32 3300028666 Ga0265336_10000281 Ga0265336_100002813 1034
33 3300028800 Ga0265338_10000261 Ga0265338_100002619 1034
34 3300028800 Ga0265338_10001502 Ga0265338_1000150228 1034
35 3300028800 Ga0265338_10008031 Ga0265338_100080313 1034
36 3300028800 Ga0265338_10013536 Ga0265338_100135366 1034
37 3300029957 Ga0265324_10000884 Ga0265324_1000088414 1034
38 3300029957 Ga0265324_10007963 Ga0265324_100079632 1034
39 3300031235 Ga0265330_10001969 Ga0265330_100019693 1034
40 3300031235 Ga0265330_10012736 Ga0265330_100127362 1034
41 3300031238 Ga0265332_10000475 Ga0265332_100004755 1034
42 3300031240 Ga0265320_10002476 Ga0265320_100024769 1034
43 3300031242 Ga0265329_10000571 Ga0265329_100005715 1034
44 3300031247 Ga0265340_10009665 Ga0265340_100096653 1034
45 3300031249 Ga0265339_10000645 Ga0265339_1000064513 1034
46 3300031344 Ga0265316_10000439 Ga0265316_1000043923 1034
47 3300031344 Ga0265316_10021043 Ga0265316_100210433 1034
48 3300031595 Ga0265313_10003125 Ga0265313_1000312510 1034
49 3300031711 Ga0265314_10001102 Ga0265314_1000110223 1034
50 3300031712 Ga0265342_10000142 Ga0265342_1000014253 1034
51 3300028800 Ga0265338_10001023 Ga0265338_1000102321 1039
52 3300045051 Ga0451576_0003157 Ga0451576_0003157_11450_14719 1039
53 3300045051 Ga0451576_0009561 Ga0451576_0009561_2848_6084 1041
54 3300042876 Ga0451577_0000465 Ga0451577_0000465_50408_53623 1044
55 3300044712 Ga0453684_0001383 Ga0453684_0001383_16610_19825 1044
56 3300009551 Ga0105238_10005447 Ga0105238_1000544711 1045
57 3300044719 Ga0466971_0000008 Ga0466971_0000008_67778_71017 1045
58 3300061719 Ga0466962_0000004 Ga0466962_0000004_37441_40680 1045
59 3300028653 Ga0265323_10000224 Ga0265323_1000022427 1046
60 3300028654 Ga0265322_10000168 Ga0265322_1000016829 1046
61 3300028800 Ga0265338_10002439 Ga0265338_1000243913 1046
62 3300031712 Ga0265342_10003725 Ga0265342_100037255 1046
63 3300031240 Ga0265320_10000393 Ga0265320_100003939 1048
64 3300049744 Ga0501083_0001533 Ga0501083_0001533_11101_14343 1053
65 3300049574 Ga0501038_0001318 Ga0501038_0001318_14552_17824 1055
66 3300006237 Ga0097621_100006140 Ga0097621_1000061403 1058
67 3300028800 Ga0265338_10012845 Ga0265338_100128456 1058
68 3300042876 Ga0451577_0000731 Ga0451577_0000731_10739_14062 1058
69 3300044712 Ga0453684_0015814 Ga0453684_0015814_6233_9556 1058
70 3300046689 Ga0495613_0016462 Ga0495613_0016462_447_3719 1059
71 3300047322 Ga0495680_0009594 Ga0495680_0009594_21_3293 1059
72 3300005289 Ga0065704_10004801 Ga0065704_100048013 1060
73 3300014325 Ga0163163_10000702 Ga0163163_1000070225 1060
74 3300028800 Ga0265338_10000985 Ga0265338_1000098523 1060
75 3300029957 Ga0265324_10004677 Ga0265324_100046771 1060
76 3300013308 Ga0157375_10000006 Ga0157375_1000000698 1062
77 3300031251 Ga0265327_10002717 Ga0265327_100027179 1062
78 3300028800 Ga0265338_10000867 Ga0265338_1000086737 1063
79 3300042876 Ga0451577_0003476 Ga0451577_0003476_4025_7312 1063
80 3300028800 Ga0265338_10002748 Ga0265338_1000274824 1064
81 3300031242 Ga0265329_10001189 Ga0265329_100011893 1064
82 3300031711 Ga0265314_10000050 Ga0265314_10000050102 1064
83 3300037466 Ga0395898_0000135 Ga0395898_0000135_107841_111119 1064
84 3300048918 Ga0496115_0006136 Ga0496115_0006136_4090_7353 1064
85 3300049580 Ga0501046_0015353 Ga0501046_0015353_1674_5003 1064
86 3300026088 Ga0207641_10004540 Ga0207641_100045408 1065
87 3300045051 Ga0451576_0016953 Ga0451576_0016953_1790_5026 1065
88 3300049570 Ga0501033_0000187 Ga0501033_0000187_3499_6738 1065
89 3300049573 Ga0501037_0000002 Ga0501037_0000002_34037_37300 1065
90 3300049574 Ga0501038_0019916 Ga0501038_0019916_1115_4354 1065
91 3300049823 Ga0501044_0000836 Ga0501044_0000836_16990_20253 1065
92 3300045051 Ga0451576_0005536 Ga0451576_0005536_7367_10645 1066
93 3300005614 Ga0068856_100038583 Ga0068856_1000385832 1069
94 3300026078 Ga0207702_10001963 Ga0207702_100019632 1069
95 3300026078 Ga0207702_10016381 Ga0207702_100163812 1069
96 3300037312 Ga0395899_0000039 Ga0395899_0000039_231496_234780 1069
97 3300044842 Ga0466957_0017921 Ga0466957_0017921_454_3738 1069
98 3300046517 Ga0495630_0000877 Ga0495630_0000877_8414_11653 1069
99 3300046526 Ga0495666_0002918 Ga0495666_0002918_106_3345 1069
100 3300046535 Ga0495586_0000441 Ga0495586_0000441_9461_12700 1069
101 3300047319 Ga0495674_0002856 Ga0495674_0002856_4106_7345 1069
102 3300049571 Ga0501034_0031994 Ga0501034_0031994_1227_4481 1069
103 3300005439 Ga0070711_100001798 Ga0070711_1000017987 1070
104 3300013297 Ga0157378_10041986 Ga0157378_100419862 1070
105 3300025916 Ga0207663_10001120 Ga0207663_100011207 1070
106 3300028653 Ga0265323_10003868 Ga0265323_100038682 1070
107 3300044673 Ga0453683_0005472 Ga0453683_0005472_834_4127 1071
108 3300031251 Ga0265327_10001835 Ga0265327_1000183515 1072
109 3300049570 Ga0501033_0001003 Ga0501033_0001003_3613_6939 1072
110 iso_pu_bacteria 2786546940 2788437316 1075
111 3300028653 Ga0265323_10006167 Ga0265323_100061672 1077
112 3300028800 Ga0265338_10006473 Ga0265338_100064733 1077
113 3300045051 Ga0451576_0015965 Ga0451576_0015965_1021_4347 1077
114 3300049570 Ga0501033_0002665 Ga0501033_0002665_2233_5484 1077
115 3300049574 Ga0501038_0002865 Ga0501038_0002865_2397_5648 1077
116 3300049822 Ga0501035_0007726 Ga0501035_0007726_6371_9622 1077
117 3300001991 JGI24743J22301_10000088 JGI24743J22301_100000882 1079
118 3300003323 rootH1_10004954 rootH1_100049549 1079
119 3300005290 Ga0065712_10074807 Ga0065712_100748071 1079
120 3300005329 Ga0070683_100001044 Ga0070683_1000010444 1079
121 3300005330 Ga0070690_100009241 Ga0070690_1000092412 1079
122 3300005563 Ga0068855_100021451 Ga0068855_1000214512 1079
123 3300005614 Ga0068856_100001761 Ga0068856_1000017618 1079
124 3300006028 Ga0070717_10000104 Ga0070717_1000010411 1079
125 3300013297 Ga0157378_10002996 Ga0157378_100029965 1079
126 3300013297 Ga0157378_10018227 Ga0157378_100182272 1079
127 3300013306 Ga0163162_10012323 Ga0163162_100123233 1079
128 3300013308 Ga0157375_10000243 Ga0157375_1000024329 1079
129 3300025920 Ga0207649_10004233 Ga0207649_100042335 1079
130 3300025924 Ga0207694_10004975 Ga0207694_100049755 1079
131 3300025931 Ga0207644_10001326 Ga0207644_100013268 1079
132 3300025944 Ga0207661_10020965 Ga0207661_100209652 1079
133 3300026078 Ga0207702_10005192 Ga0207702_1000519210 1079
134 3300028653 Ga0265323_10002055 Ga0265323_100020553 1079
135 3300028800 Ga0265338_10001684 Ga0265338_1000168422 1079
136 3300028800 Ga0265338_10018665 Ga0265338_100186654 1079
137 3300029957 Ga0265324_10001724 Ga0265324_100017249 1079
138 3300031247 Ga0265340_10000309 Ga0265340_1000030925 1079
139 3300031344 Ga0265316_10005662 Ga0265316_1000566212 1079
140 3300031711 Ga0265314_10017048 Ga0265314_100170482 1079
141 3300035084 Ga0373928_0000013 Ga0373928_0000013_11661_14918 1079
142 3300035089 Ga0373944_0000254 Ga0373944_0000254_6557_9814 1079
143 3300035090 Ga0373949_0002542 Ga0373949_0002542_128_3385 1079
144 3300035091 Ga0373951_0000765 Ga0373951_0000765_116_3373 1079
145 3300035112 Ga0373932_0000001 Ga0373932_0000001_956997_960254 1079
146 3300035242 Ga0373962_0000080 Ga0373962_0000080_2824_6081 1079
147 3300035691 Ga0373931_0000002 Ga0373931_0000002_535144_538401 1079
148 3300037068 Ga0373925_0000497 Ga0373925_0000497_32412_35669 1079
149 3300044712 Ga0453684_0000287 Ga0453684_0000287_124343_127678 1079
150 3300044712 Ga0453684_0009754 Ga0453684_0009754_5757_9044 1079
151 3300045051 Ga0451576_0000052 Ga0451576_0000052_148957_152277 1079
152 3300045051 Ga0451576_0001552 Ga0451576_0001552_5892_9215 1079
153 3300045051 Ga0451576_0001653 Ga0451576_0001653_4834_8169 1079
154 3300049568 Ga0501031_0000149 Ga0501031_0000149_28060_31647 1079
155 3300049568 Ga0501031_0000727 Ga0501031_0000727_38_3301 1079
156 3300049569 Ga0501032_0000126 Ga0501032_0000126_55794_59060 1079
157 3300049570 Ga0501033_0000258 Ga0501033_0000258_27580_30846 1079
158 3300049570 Ga0501033_0004306 Ga0501033_0004306_4101_7688 1079
159 3300049575 Ga0501039_0007020 Ga0501039_0007020_35_3298 1079
160 3300049579 Ga0501043_0000716 Ga0501043_0000716_21611_24874 1079
161 3300049579 Ga0501043_0001585 Ga0501043_0001585_4452_7715 1079
162 3300049581 Ga0501047_0044370 Ga0501047_0044370_55_3318 1079
163 3300049586 Ga0501070_0005629 Ga0501070_0005629_6020_9283 1079
164 3300049822 Ga0501035_0000007 Ga0501035_0000007_331507_334770 1079
165 3300049823 Ga0501044_0000281 Ga0501044_0000281_30643_34230 1079

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00873

ACR_tran

AcrB/AcrD/AcrF family

5

568

0.97

PF00873

ACR_tran

AcrB/AcrD/AcrF family

572

1100

0.89

Structural Annotation

Top 5 Hits

ID Description Score Start End
4dnt-assembly1.cif.gz_A crystal structure of the cusba heavy-metal efflux complex from escherichia coli, mutant 0.8968 1 1071
4k0j-assembly2.cif.gz_F x-ray crystal structure of a heavy metal efflux pump, crystal form i 0.8964 6 1070
4k0j-assembly2.cif.gz_E x-ray crystal structure of a heavy metal efflux pump, crystal form i 0.8958 6 1073
4k0j-assembly2.cif.gz_D x-ray crystal structure of a heavy metal efflux pump, crystal form i 0.8954 5 1070
3k07-assembly1.cif.gz_A crystal structure of cusa 0.8944 5 1070
ID Description Score Start End Superfamily
af_P38054_46_113_3.30.70.1430 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.9653 48 113 3.30.70.1430
af_P38054_335_507_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9627 335 497 1.20.1640.10
af_P38054_878_1046_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9545 915 1079 1.20.1640.10
af_Q2FVZ5_39_104_3.30.70.1430 Alpha Beta;2-Layer Sandwich;Alpha-Beta Plaits;Multidrug efflux transporter AcrB pore domain 0.9396 44 103 3.30.70.1430
af_P24177_305_504_1.20.1640.10 Mainly Alpha;Up-down Bundle;Multidrug efflux transporter AcrB transmembrane fold;Multidrug efflux transporter AcrB transmembrane domain 0.9376 302 499 1.20.1640.10
ID Description Score Start End GO Terms
AF-A0A0F4UWF3-F1-model_v4 CusA/CzcA family heavy metal efflux RND transporter 0.9568 290 496 GO:0005886
GO:0042910
AF-A0A062TZZ3-F1-model_v4 Metal transporter 0.9431 275 1068 GO:0005886
GO:0008324
GO:0042910
AF-A0A2X3K212-F1-model_v4 Cation efflux system protein 0.9413 894 1074 GO:0005886
GO:0042910
AF-A0A257WVS5-F1-model_v4 CusA/CzcA family heavy metal efflux RND transporter 0.9366 736 1071 GO:0005886
GO:0042910
AF-A0A2V8TKT1-F1-model_v4 CusA/CzcA family heavy metal efflux RND transporter 0.9314 729 1071 GO:0005886
GO:0042910

Feature Viewer

pLDDT pTM Quality
78.33 0.73 High
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Predicted Structure (AlphaFold2)

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