F246551

General Info

Members Datasets Scaffolds Average Seq Length
165 34 330 169

Family's Representative Sequence

Representative Sequence 3300033527|Ga0316586_1003553|Ga0316586_10035532
Length 185
Sequence LLNMAPTGALPNRAEQDEADGHRSSRLIVLGRIAGLYGVRGWVRVFSETDPKENILRYSPWLLEGDAHVVAEGRRHGKGLVVRLEGCSDRDQAANLVGRSICVHRDQLPPAQTDEFYWADLEGLAVETLAGESLGRVSHLFDTGANDVLVVKGDRERLLPFVWDDIVKDVDFQSGTIKVDWDPDF

Samples

Sample ID Description Type Environment
1 3300033527 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
2 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
3 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
4 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
5 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
6 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
7 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
8 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
9 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
10 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
11 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
12 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
13 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
14 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
15 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
16 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
17 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
18 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
19 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
20 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
21 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
22 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
23 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
24 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
25 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
26 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
27 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
28 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
29 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
30 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
31 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
32 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
33 2836160341 Unclassified Planctomycetes Bin 134 Isolate Unclassified
34 2989392574 Methylomonas rhizoryzae GJ1 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 60
Metatranscriptomes 38.79
Isolates 1.21

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 61.21
Stem 0
Stem Tuber 0
Unclassified 1.82

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0316586_1003553 3300033527 Bacteria 2057
2 Ga0068869_101317640 3300005334 Bacteria 637
3 Ga0070681_10000122 3300005458 Bacteria 58332
4 Ga0157373_10081763 3300013100 Bacteria 2277
5 Ga0207707_10000310 3300025912 Bacteria 51190
6 Ga0265327_10172715 3300031251 Bacteria 992
7 Ga0316575_10060187 3300031665 Bacteria 1516
8 Ga0316575_10077275 3300031665 Bacteria 1341
9 Ga0316579_10002198 3300031691 Bacteria 7352
10 Ga0316579_10056870 3300031691 Bacteria 1837
11 Ga0316579_10060244 3300031691 Bacteria 1785
12 Ga0316579_10106728 3300031691 Bacteria 1343
13 Ga0316576_10001368 3300031727 Bacteria 13015
14 Ga0316576_10021165 3300031727 Bacteria 4493
15 Ga0316576_10027702 3300031727 Bacteria 3985
16 Ga0316576_10179353 3300031727 Bacteria 1597
17 Ga0316576_10254361 3300031727 Bacteria 1318
18 Ga0316576_10618709 3300031727 Unclassified 790
19 Ga0316578_10005951 3300031728 Bacteria 5971
20 Ga0316578_10009209 3300031728 Bacteria 5068
21 Ga0316578_10168976 3300031728 Bacteria 1318
22 Ga0316577_10011504 3300031733 Bacteria 4795
23 Ga0316577_10022035 3300031733 Bacteria 3536
24 Ga0316583_10047776 3300032133 Bacteria 1508
25 Ga0316583_10108169 3300032133 Bacteria 969
26 Ga0316580_10062668 3300032139 Bacteria 1141
27 Ga0316593_10000702 3300032168 Bacteria 6538
28 Ga0316593_10002527 3300032168 Bacteria 4363
29 Ga0316593_10008753 3300032168 Bacteria 2835
30 Ga0316593_10009511 3300032168 Bacteria 2748
31 Ga0316593_10012771 3300032168 Bacteria 2471
32 Ga0316593_10019654 3300032168 Bacteria 2090
33 Ga0316593_10026492 3300032168 Bacteria 1854
34 Ga0316593_10028391 3300032168 Bacteria 1803
35 Ga0316593_10030415 3300032168 Bacteria 1753
36 Ga0316593_10041158 3300032168 Bacteria 1537
37 Ga0316593_10044992 3300032168 Bacteria 1478
38 Ga0316593_10083139 3300032168 Bacteria 1120
39 Ga0316593_10083226 3300032168 Bacteria 1119
40 Ga0316593_10086256 3300032168 Bacteria 1101
41 Ga0316593_10104954 3300032168 Bacteria 1005
42 Ga0316593_10115474 3300032168 Bacteria 961
43 Ga0316593_10134127 3300032168 Bacteria 895
44 Ga0316593_10136591 3300032168 Unclassified 887
45 Ga0316593_10139828 3300032168 Bacteria 877
46 Ga0316593_10141843 3300032168 Bacteria 871
47 Ga0316592_1004811 3300033524 Bacteria 2530
48 Ga0316592_1005136 3300033524 Bacteria 2470
49 Ga0316592_1006937 3300033524 Bacteria 2198
50 Ga0316592_1019489 3300033524 Bacteria 1435
51 Ga0316592_1024875 3300033524 Bacteria 1289
52 Ga0316592_1033984 3300033524 Bacteria 1116
53 Ga0316592_1034266 3300033524 Bacteria 1112
54 Ga0316592_1057154 3300033524 Bacteria 874
55 Ga0316586_1002434 3300033527 Bacteria 2318
56 Ga0316586_1004257 3300033527 Bacteria 1942
57 Ga0316586_1006621 3300033527 Bacteria 1667
58 Ga0316586_1021392 3300033527 Bacteria 1069
59 Ga0316586_1023976 3300033527 Bacteria 1021
60 Ga0316586_1024283 3300033527 Unclassified 1016
61 Ga0316588_1004524 3300033528 Bacteria 2642
62 Ga0316588_1010076 3300033528 Bacteria 1984
63 Ga0316588_1018369 3300033528 Bacteria 1566
64 Ga0316588_1025465 3300033528 Bacteria 1367
65 Ga0316588_1033929 3300033528 Bacteria 1204
66 Ga0316588_1041177 3300033528 Bacteria 1105
67 Ga0316587_1001625 3300033529 Bacteria 2827
68 Ga0316587_1002109 3300033529 Bacteria 2604
69 Ga0316587_1002999 3300033529 Bacteria 2318
70 Ga0316587_1006628 3300033529 Bacteria 1776
71 Ga0316587_1008734 3300033529 Bacteria 1597
72 Ga0316587_1016912 3300033529 Bacteria 1219
73 Ga0316587_1018471 3300033529 Bacteria 1175
74 Ga0316587_1020982 3300033529 Bacteria 1112
75 Ga0316587_1040092 3300033529 Bacteria 845
76 Ga0316587_1047101 3300033529 Bacteria 785
77 Ga0316587_1056394 3300033529 Bacteria 724
78 Ga0316596_1001628 3300033541 Bacteria 4607
79 Ga0316596_1004536 3300033541 Bacteria 3122
80 Ga0316596_1005947 3300033541 Bacteria 2813
81 Ga0316596_1007430 3300033541 Bacteria 2589
82 Ga0316596_1010266 3300033541 Bacteria 2263
83 Ga0316596_1017000 3300033541 Bacteria 1826
84 Ga0316596_1018937 3300033541 Bacteria 1743
85 Ga0316596_1019218 3300033541 Bacteria 1733
86 Ga0316596_1023450 3300033541 Bacteria 1581
87 Ga0316596_1027076 3300033541 Bacteria 1479
88 Ga0316596_1036079 3300033541 Bacteria 1292
89 Ga0316596_1060605 3300033541 Bacteria 1009
90 Ga0316574_0008854 3300035398 Bacteria 5612
91 Ga0316574_0026910 3300035398 Bacteria 3461
92 Ga0316574_0034477 3300035398 Bacteria 3086
93 Ga0316582_0043194 3300036647 Bacteria 2827
94 Ga0316582_0389878 3300036647 Bacteria 959
95 Ga0316582_0525125 3300036647 Bacteria 816
96 Ga0316584_0086498 3300036712 Bacteria 2346
97 Ga0316584_0383775 3300036712 Bacteria 1003
98 Ga0400484_04568 3300038725 Bacteria 3550
99 Ga0400484_06581 3300038725 Bacteria 1051
100 Ga0400484_08517 3300038725 Bacteria 1297
101 Ga0400484_39795 3300038725 Bacteria 11914
102 Ga0400484_41466 3300038725 Bacteria 1499
103 Ga0400484_44116 3300038725 Bacteria 10878
104 Ga0400490_01456 3300038726 Bacteria 2143
105 Ga0400490_07088 3300038726 Bacteria 2570
106 Ga0400490_14181 3300038726 Bacteria 1657
107 Ga0400490_21193 3300038726 Bacteria 3552
108 Ga0400490_39871 3300038726 Bacteria 6650
109 Ga0400490_41264 3300038726 Bacteria 84677
110 Ga0400490_48967 3300038726 Bacteria 1850
111 Ga0400490_52169 3300038726 Bacteria 17663
112 Ga0400490_52315 3300038726 Bacteria 1695
113 Ga0400491_08296 3300038727 Bacteria 1320
114 Ga0400491_08916 3300038727 Bacteria 1919
115 Ga0400491_13041 3300038727 Bacteria 1128
116 Ga0400491_23708 3300038727 Bacteria 1200
117 Ga0400485_03917 3300038735 Bacteria 1425
118 Ga0400485_07724 3300038735 Bacteria 7326
119 Ga0400485_18896 3300038735 Bacteria 72885
120 Ga0400488_13114 3300038741 Bacteria 1261
121 Ga0400488_28249 3300038741 Bacteria 3983
122 Ga0400488_35496 3300038741 Bacteria 1835
123 Ga0400488_35784 3300038741 Bacteria 1568
124 Ga0400488_36082 3300038741 Bacteria 1551
125 Ga0400488_37987 3300038741 Bacteria 1524
126 Ga0400488_43978 3300038741 Bacteria 16431
127 Ga0400488_47445 3300038741 Bacteria 1154
128 Ga0400486_12111 3300038742 Bacteria 6365
129 Ga0400486_12648 3300038742 Bacteria 1082
130 Ga0400486_19627 3300038742 Bacteria 369894
131 Ga0400486_20795 3300038742 Bacteria 1959
132 Ga0400486_23726 3300038742 Bacteria 1940
133 Ga0400486_24352 3300038742 Bacteria 2382
134 Ga0400483_003711 3300039062 Bacteria 4871
135 Ga0400483_024375 3300039062 Bacteria 5091
136 Ga0400483_047073 3300039062 Bacteria 2400
137 Ga0400483_054834 3300039062 Bacteria 1329
138 Ga0400483_091595 3300039062 Bacteria 4572
139 Ga0400483_097253 3300039062 Bacteria 5649
140 Ga0400483_116941 3300039062 Bacteria 2933
141 Ga0400483_157294 3300039062 Bacteria 17208
142 Ga0400483_161726 3300039062 Bacteria 1139
143 Ga0400483_188370 3300039062 Bacteria 17777
144 Ga0400483_189140 3300039062 Bacteria 7579
145 Ga0400483_195523 3300039062 Bacteria 14201
146 Ga0400483_208518 3300039062 Bacteria 2348
147 Ga0400483_242051 3300039062 Bacteria 5619
148 Ga0400483_276159 3300039062 Bacteria 1858
149 Ga0400483_281959 3300039062 Bacteria 2981
150 Ga0400489_49590 3300039093 Bacteria 5512
151 Ga0400487_07260 3300039110 Bacteria 1763
152 Ga0400487_12712 3300039110 Bacteria 1794
153 Ga0400487_13622 3300039110 Bacteria 1929
154 Ga0400487_24681 3300039110 Bacteria 1322
155 Ga0400487_31408 3300039110 Bacteria 34683
156 Ga0400487_38859 3300039110 Bacteria 12497
157 Ga0400487_64163 3300039110 Bacteria 12120
158 Ga0400487_66353 3300039110 Bacteria 11859
159 Ga0400487_66534 3300039110 Bacteria 4967
160 Ga0451577_0000852 3300042876 Bacteria 45450
161 Ga0453684_0002092 3300044712 Bacteria 50519
162 Ga0453684_0018446 3300044712 Bacteria 10709
163 Ga0453684_0567043 3300044712 Bacteria 1248
164 2836161017 2836160341 Unclassified 5867367
165 2989393131 2989392574 Bacteria 4554005
166 Ga0316586_1003553
167 Ga0068869_101317640
168 Ga0070681_10000122
169 Ga0157373_10081763
170 Ga0207707_10000310
171 Ga0265327_10172715
172 Ga0316575_10060187
173 Ga0316575_10077275
174 Ga0316579_10002198
175 Ga0316579_10056870
176 Ga0316579_10060244
177 Ga0316579_10106728
178 Ga0316576_10001368
179 Ga0316576_10021165
180 Ga0316576_10027702
181 Ga0316576_10179353
182 Ga0316576_10254361
183 Ga0316576_10618709
184 Ga0316578_10005951
185 Ga0316578_10009209
186 Ga0316578_10168976
187 Ga0316577_10011504
188 Ga0316577_10022035
189 Ga0316583_10047776
190 Ga0316583_10108169
191 Ga0316580_10062668
192 Ga0316593_10000702
193 Ga0316593_10002527
194 Ga0316593_10008753
195 Ga0316593_10009511
196 Ga0316593_10012771
197 Ga0316593_10019654
198 Ga0316593_10026492
199 Ga0316593_10028391
200 Ga0316593_10030415
201 Ga0316593_10041158
202 Ga0316593_10044992
203 Ga0316593_10083139
204 Ga0316593_10083226
205 Ga0316593_10086256
206 Ga0316593_10104954
207 Ga0316593_10115474
208 Ga0316593_10134127
209 Ga0316593_10136591
210 Ga0316593_10139828
211 Ga0316593_10141843
212 Ga0316592_1004811
213 Ga0316592_1005136
214 Ga0316592_1006937
215 Ga0316592_1019489
216 Ga0316592_1024875
217 Ga0316592_1033984
218 Ga0316592_1034266
219 Ga0316592_1057154
220 Ga0316586_1002434
221 Ga0316586_1004257
222 Ga0316586_1006621
223 Ga0316586_1021392
224 Ga0316586_1023976
225 Ga0316586_1024283
226 Ga0316588_1004524
227 Ga0316588_1010076
228 Ga0316588_1018369
229 Ga0316588_1025465
230 Ga0316588_1033929
231 Ga0316588_1041177
232 Ga0316587_1001625
233 Ga0316587_1002109
234 Ga0316587_1002999
235 Ga0316587_1006628
236 Ga0316587_1008734
237 Ga0316587_1016912
238 Ga0316587_1018471
239 Ga0316587_1020982
240 Ga0316587_1040092
241 Ga0316587_1047101
242 Ga0316587_1056394
243 Ga0316596_1001628
244 Ga0316596_1004536
245 Ga0316596_1005947
246 Ga0316596_1007430
247 Ga0316596_1010266
248 Ga0316596_1017000
249 Ga0316596_1018937
250 Ga0316596_1019218
251 Ga0316596_1023450
252 Ga0316596_1027076
253 Ga0316596_1036079
254 Ga0316596_1060605
255 Ga0316574_0008854
256 Ga0316574_0026910
257 Ga0316574_0034477
258 Ga0316582_0043194
259 Ga0316582_0389878
260 Ga0316582_0525125
261 Ga0316584_0086498
262 Ga0316584_0383775
263 Ga0400484_04568
264 Ga0400484_06581
265 Ga0400484_08517
266 Ga0400484_39795
267 Ga0400484_41466
268 Ga0400484_44116
269 Ga0400490_01456
270 Ga0400490_07088
271 Ga0400490_14181
272 Ga0400490_21193
273 Ga0400490_39871
274 Ga0400490_41264
275 Ga0400490_48967
276 Ga0400490_52169
277 Ga0400490_52315
278 Ga0400491_08296
279 Ga0400491_08916
280 Ga0400491_13041
281 Ga0400491_23708
282 Ga0400485_03917
283 Ga0400485_07724
284 Ga0400485_18896
285 Ga0400488_13114
286 Ga0400488_28249
287 Ga0400488_35496
288 Ga0400488_35784
289 Ga0400488_36082
290 Ga0400488_37987
291 Ga0400488_43978
292 Ga0400488_47445
293 Ga0400486_12111
294 Ga0400486_12648
295 Ga0400486_19627
296 Ga0400486_20795
297 Ga0400486_23726
298 Ga0400486_24352
299 Ga0400483_003711
300 Ga0400483_024375
301 Ga0400483_047073
302 Ga0400483_054834
303 Ga0400483_091595
304 Ga0400483_097253
305 Ga0400483_116941
306 Ga0400483_157294
307 Ga0400483_161726
308 Ga0400483_188370
309 Ga0400483_189140
310 Ga0400483_195523
311 Ga0400483_208518
312 Ga0400483_242051
313 Ga0400483_276159
314 Ga0400483_281959
315 Ga0400489_49590
316 Ga0400487_07260
317 Ga0400487_12712
318 Ga0400487_13622
319 Ga0400487_24681
320 Ga0400487_31408
321 Ga0400487_38859
322 Ga0400487_64163
323 Ga0400487_66353
324 Ga0400487_66534
325 Ga0451577_0000852
326 Ga0453684_0002092
327 Ga0453684_0018446
328 Ga0453684_0567043
329 2836161017
330 2989393131

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01782

RimM

RimM N-terminal domain

29

107

0.94

PF05239

PRC

PRC-barrel domain

113

184

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
2dog-assembly1.cif.gz_A solution structure of the n-terminal domain of rimm from thermus thermophilus hb8 0.8745 9 97
7cq1-assembly1.cif.gz_A solution structure of the c-terminal domain of mycobacterium tuberculosis ribosome maturation factor protein rimm 0.8682 102 167
3a1p-assembly2.cif.gz_C structure of ribosome maturation protein rimm and ribosomal protein s19 0.8351 8 170
2dog-assembly1.cif.gz_A solution structure of the n-terminal domain of rimm from thermus thermophilus hb8 0.8279 9 97
3a1p-assembly2.cif.gz_C structure of ribosome maturation protein rimm and ribosomal protein s19 0.8114 8 170
ID Description Score Start End Superfamily
af_P0A7X6_101_182_2.30.30.240 Mainly Beta;Roll;SH3 type barrels.;PRC-barrel domain 0.9704 98 172 2.30.30.240
af_Q2FZ44_92_167_2.30.30.240 Mainly Beta;Roll;SH3 type barrels.;PRC-barrel domain 0.9586 98 166 2.30.30.240
2f1lA01 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;RimM 0.9463 8 97 2.40.30.60
af_P9WH19_99_175_2.30.30.240 Mainly Beta;Roll;SH3 type barrels.;PRC-barrel domain 0.9367 99 167 2.30.30.240
2f1lA01 Mainly Beta;Beta Barrel;Elongation Factor Tu (Ef-tu); domain 3;RimM 0.9362 8 97 2.40.30.60
ID Description Score Start End GO Terms
AF-V4JVA2-F1-model_v4 Ribosome maturation factor RimM 0.9538 5 172 GO:0005737
GO:0005840
GO:0006364
GO:0042274
GO:0043022
AF-A0A3C0JA34-F1-model_v4 Ribosome maturation factor RimM 0.9436 7 152 GO:0005737
GO:0005840
GO:0006364
GO:0043022
AF-Q8PMY2-F1-model_v4 Ribosome maturation factor RimM 0.939 4 172 GO:0005737
GO:0005840
GO:0006364
GO:0042274
GO:0043022
AF-A0A351MBF1-F1-model_v4 Ribosome maturation factor RimM 0.9287 1 172 GO:0005737
GO:0005840
GO:0006364
GO:0042274
GO:0043022
AF-Q8PMY2-F1-model_v4 Ribosome maturation factor RimM 0.9285 4 172 GO:0005737
GO:0005840
GO:0006364
GO:0042274
GO:0043022

Map