F244903

General Info

Members Datasets Scaffolds Average Seq Length
164 112 328 276

Family's Representative Sequence

Representative Sequence 3300050516|nmdc:mga0sz30_101274_c1|nmdc:mga0sz30_101274_c1_251_1153
Length 300
Sequence MMSAPKSPSSDRRVAAATFSPPSRGEGSEALPPLREVIARHELAARKSLGQHFLLDLNLTDRIARAAGDLSTGTTIEVGPGPGGLTRSLLRNGAQRVVCVERDPRAVAAIGELAAVFPDRLEVIEADALAIDIAALVAAPRRIVANLPYNISTALLTRWLHAAPALESMTLMFQKEVVDRLVAAPRTKDYGRLSVLTQVVCSAARLFDIAPTAFVPPPKVVSTVVRLVPRAPATESLDLHALERVTGAAFGQRRKMLRTSLRAAFREPEAALAACSIPGTARAEDLTTAQFVALARFKSL

Samples

Sample ID Description Type Environment
1 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
2 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
3 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
6 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
7 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
8 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
9 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
10 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
11 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
12 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
13 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
14 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
15 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
16 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
17 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
18 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
19 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
20 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
21 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
22 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
23 3300006048 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 Metagenome Endosphere
24 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
25 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
26 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
27 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
28 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
29 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
30 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
31 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
32 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
33 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
34 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
35 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
36 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
37 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
38 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
39 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
61 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
62 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
63 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
64 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
65 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
66 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
67 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
68 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
69 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
70 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
71 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
72 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
73 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
74 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
75 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
76 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
77 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
78 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
79 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
80 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
81 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
82 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
83 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
84 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
85 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
86 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
87 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
88 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
89 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
90 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
91 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
92 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
93 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
95 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
96 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
97 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
98 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
99 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
100 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
101 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
102 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
103 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
104 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
105 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
106 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
107 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
108 2883354860 Hypericibacter adhaerens R5959 Isolate Rhizosphere
109 2928027323 Sphingomonas sp. 1185 Isolate Unclassified
110 2984555340 Sphingomonas sp. SORGH_AS789 Isolate Aerial Root
111 2984564862 Sphingomonas sp. SORGH_AS870 Isolate Aerial Root
112 2993356040 Sphingomonas sp. SORGH_AS742 Isolate Aerial Root

Type Distribution

Type Percentage (%)
Metagenomes 96.95
Metatranscriptomes 0
Isolates 3.05

Biome Distribution

Category Percentage (%)
Aerial Root 1.83
Bulb 0
Endosphere 17.68
Nodule 0
Rhizoplane 4.27
Rhizosphere 72.56
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 nmdc:mga0sz30_101274_c1 3300050516 Bacteria 1258
2 JGI25160J50197_1003215 3300003354 Bacteria 7389
3 Ga0070658_10004236 3300005327 Bacteria 11729
4 Ga0070680_100014907 3300005336 Bacteria 6082
5 Ga0070691_10013429 3300005341 Bacteria 3750
6 Ga0070661_100201612 3300005344 Bacteria 1520
7 Ga0070669_100449507 3300005353 Bacteria 1062
8 Ga0070675_100104915 3300005354 Bacteria 2385
9 Ga0070659_100258486 3300005366 Bacteria 1445
10 Ga0070681_10004571 3300005458 Bacteria 13204
11 Ga0070699_100059212 3300005518 Bacteria 3318
12 Ga0070665_100007072 3300005548 Bacteria 11402
13 Ga0070665_100209018 3300005548 Bacteria 1952
14 Ga0068855_100060649 3300005563 Bacteria 4423
15 Ga0068855_100247241 3300005563 Bacteria 1990
16 Ga0068854_100114009 3300005578 Bacteria 2043
17 Ga0068856_100069215 3300005614 Bacteria 3490
18 Ga0068856_100322627 3300005614 Bacteria 1562
19 Ga0068859_100378733 3300005617 Bacteria 1511
20 Ga0068863_100137097 3300005841 Bacteria 2338
21 Ga0068860_100044975 3300005843 Bacteria 4208
22 Ga0068862_100121901 3300005844 Bacteria 2299
23 Ga0081455_10016196 3300005937 Bacteria 7206
24 Ga0081539_10004795 3300005985 Bacteria 14562
25 Ga0075365_10237378 3300006038 Bacteria 1280
26 Ga0075363_100145754 3300006048 Bacteria 1335
27 Ga0075362_10012850 3300006177 Bacteria 3337
28 Ga0075367_10011656 3300006178 Bacteria 4663
29 Ga0075369_10023611 3300006186 Bacteria 2543
30 Ga0075369_10031198 3300006186 Bacteria 2247
31 Ga0075366_10005234 3300006195 Bacteria 7025
32 Ga0075366_10091475 3300006195 Bacteria 1822
33 Ga0097620_100378734 3300006931 Bacteria 1511
34 Ga0105240_10009374 3300009093 Bacteria 13873
35 Ga0105240_10215374 3300009093 Bacteria 2241
36 Ga0105245_10386074 3300009098 Bacteria 1396
37 Ga0105238_10333714 3300009551 Bacteria 1503
38 Ga0105239_10199367 3300010375 Bacteria 2242
39 Ga0163162_10152966 3300013306 Bacteria 2425
40 Ga0157372_10294078 3300013307 Bacteria 1889
41 Ga0213872_10000732 3300021361 Bacteria 24523
42 Ga0213872_10004159 3300021361 Bacteria 7779
43 Ga0213872_10020375 3300021361 Bacteria 3056
44 Ga0213872_10020574 3300021361 Bacteria 3042
45 Ga0213872_10029424 3300021361 Bacteria 2519
46 Ga0213876_10014753 3300021384 Bacteria 4140
47 Ga0213876_10094463 3300021384 Bacteria 1584
48 Ga0209130_1001065 3300025284 Bacteria 20648
49 Ga0207426_1000304 3300025302 Bacteria 96312
50 Ga0207426_1041778 3300025302 Bacteria 1419
51 Ga0207699_10085589 3300025906 Bacteria 1966
52 Ga0207705_10123319 3300025909 Bacteria 1924
53 Ga0207707_10073015 3300025912 Bacteria 2991
54 Ga0207695_10225957 3300025913 Bacteria 1778
55 Ga0207649_10045674 3300025920 Bacteria 2686
56 Ga0207659_10312326 3300025926 Bacteria 1294
57 Ga0207700_10282217 3300025928 Bacteria 1429
58 Ga0207670_10470009 3300025936 Bacteria 1017
59 Ga0207661_10141720 3300025944 Bacteria 2069
60 Ga0207667_10085287 3300025949 Bacteria 3270
61 Ga0207667_10199060 3300025949 Bacteria 2055
62 Ga0207667_10261883 3300025949 Bacteria 1768
63 Ga0207640_10238583 3300025981 Bacteria 1403
64 Ga0207677_10248146 3300026023 Bacteria 1444
65 Ga0207677_10369746 3300026023 Bacteria 1207
66 Ga0207703_10191430 3300026035 Bacteria 1812
67 Ga0207703_10475699 3300026035 Bacteria 1170
68 Ga0207702_10064717 3300026078 Bacteria 3130
69 Ga0207702_10252823 3300026078 Bacteria 1656
70 Ga0207641_10483680 3300026088 Bacteria 1200
71 Ga0207674_10021526 3300026116 Bacteria 6942
72 Ga0207675_100350453 3300026118 Bacteria 1447
73 Ga0207698_10035854 3300026142 Bacteria 3633
74 Ga0268266_10005033 3300028379 Bacteria 12478
75 Ga0268266_10012593 3300028379 Bacteria 7307
76 Ga0268265_10107729 3300028380 Bacteria 2267
77 Ga0268264_10115452 3300028381 Bacteria 2359
78 Ga0265334_10028009 3300028573 Bacteria 2267
79 Ga0265324_10000233 3300029957 Bacteria 41978
80 Ga0265332_10096370 3300031238 Bacteria 1249
81 Ga0265328_10004426 3300031239 Bacteria 6101
82 Ga0265320_10000933 3300031240 Bacteria 21786
83 Ga0265331_10000147 3300031250 Bacteria 90993
84 Ga0265313_10000061 3300031595 Bacteria 107220
85 Ga0265313_10038210 3300031595 Bacteria 2393
86 Ga0265314_10016346 3300031711 Bacteria 5862
87 Ga0373931_0223239 3300035691 Bacteria 1135
88 Ga0373935_0225895 3300035692 Bacteria 1302
89 Ga0373927_0360747 3300035695 Bacteria 958
90 Ga0395899_0014583 3300037312 Bacteria 6000
91 Ga0395899_0029032 3300037312 Bacteria 4161
92 Ga0395900_0004821 3300037418 Bacteria 14209
93 Ga0395900_0039620 3300037418 Bacteria 4854
94 Ga0395900_0100321 3300037418 Bacteria 2974
95 Ga0395898_0024786 3300037466 Bacteria 6048
96 Ga0436364_0800249 3300037853 Bacteria 3670
97 Ga0395901_0001620 3300038443 Bacteria 23294
98 Ga0395901_0002390 3300038443 Bacteria 19092
99 Ga0395901_0010183 3300038443 Bacteria 9526
100 Ga0395901_0031991 3300038443 Bacteria 5427
101 Ga0436365_0282050 3300039437 Bacteria 19500
102 Ga0436365_1365133 3300039437 Bacteria 1594
103 Ga0436361_0059703 3300039447 Bacteria 1500
104 Ga0436361_0138169 3300039447 Bacteria 3194
105 Ga0436361_0177304 3300039447 Bacteria 2669
106 Ga0436361_0190588 3300039447 Bacteria 3264
107 Ga0436361_0340524 3300039447 Bacteria 2141
108 Ga0436361_0429880 3300039447 Bacteria 88899
109 Ga0436361_0446422 3300039447 Bacteria 6124
110 Ga0436361_0454763 3300039447 Bacteria 3148
111 Ga0436361_0488457 3300039447 Bacteria 2326
112 Ga0436361_0782145 3300039447 Bacteria 4836
113 Ga0436361_0784433 3300039447 Bacteria 44646
114 Ga0436361_0832657 3300039447 Bacteria 14978
115 Ga0436361_1037541 3300039447 Bacteria 2461
116 Ga0436361_1221227 3300039447 Bacteria 8688
117 Ga0439431_0035922 3300041997 Bacteria 1246
118 Ga0453683_0060991 3300044673 Bacteria 2358
119 Ga0466963_0082024 3300044694 Bacteria 2185
120 Ga0453684_0345683 3300044712 Bacteria 1678
121 Ga0466957_0035720 3300044842 Bacteria 2983
122 Ga0466957_0060875 3300044842 Bacteria 2316
123 Ga0451576_0013720 3300045051 Bacteria 9051
124 Ga0451576_0090940 3300045051 Bacteria 3175
125 Ga0451576_0103326 3300045051 Bacteria 2964
126 Ga0466958_0000716 3300045836 Bacteria 14493
127 Ga0466967_0035719 3300045976 Bacteria 4234
128 Ga0495610_0037943 3300046512 Bacteria 2448
129 Ga0496103_0199399 3300048906 Bacteria 1287
130 Ga0496104_0116588 3300048907 Bacteria 2563
131 Ga0496106_0053374 3300048909 Bacteria 3053
132 Ga0496108_0068350 3300048911 Bacteria 2998
133 Ga0496110_0595122 3300048913 Bacteria 1004
134 Ga0496112_0171014 3300048915 Bacteria 2138
135 Ga0496112_0405029 3300048915 Bacteria 1304
136 Ga0501034_0001400 3300049571 Bacteria 32439
137 Ga0501034_0338542 3300049571 Bacteria 1435
138 Ga0501068_0002303 3300049584 Bacteria 10167
139 Ga0501080_0473413 3300049742 Bacteria 1121
140 Ga0501044_0011590 3300049823 Bacteria 9555
141 Ga0501044_0104002 3300049823 Bacteria 2854
142 nmdc:mga03683_42_c1 3300050489 Bacteria 60876
143 nmdc:mga00v17_111909_c1 3300050491 Bacteria 1732
144 nmdc:mga0yw44_166442_c1 3300050492 Bacteria 1446
145 nmdc:mga0yw44_243815_c1 3300050492 Bacteria 1195
146 nmdc:mga0yw44_2477_c1 3300050492 Bacteria 6633
147 nmdc:mga0k408_16481_c1 3300050493 Bacteria 4101
148 nmdc:mga0k408_277139_c1 3300050493 Bacteria 1001
149 nmdc:mga0k408_3_c1 3300050493 Bacteria 243777
150 nmdc:mga06z11_117247_c1 3300050494 Bacteria 1481
151 nmdc:mga06z11_209999_c1 3300050494 Bacteria 1134
152 nmdc:mga08y16_463236_c1 3300050511 Bacteria 1291
153 nmdc:mga0sz30_16848_c1 3300050516 Bacteria 1472
154 nmdc:mga0sz30_32547_c1 3300050516 Bacteria 2163
155 Ga0495619_0144751 3300053085 Bacteria 1638
156 Ga0500642_0083397 3300053130 Bacteria 1471
157 Ga0500568_0001428 3300053139 Bacteria 15495
158 Ga0500616_0001894 3300053153 Bacteria 18817
159 Ga0500620_015685 3300053155 Bacteria 2148
160 2883357948 2883354860 Bacteria 5865246
161 2928027598 2928027323 Bacteria 4382488
162 2984558109 2984555340 Bacteria 4247089
163 2984567524 2984564862 Bacteria 4339992
164 2993358577 2993356040 Bacteria 4247105
165 nmdc:mga0sz30_101274_c1
166 JGI25160J50197_1003215
167 Ga0070658_10004236
168 Ga0070680_100014907
169 Ga0070691_10013429
170 Ga0070661_100201612
171 Ga0070669_100449507
172 Ga0070675_100104915
173 Ga0070659_100258486
174 Ga0070681_10004571
175 Ga0070699_100059212
176 Ga0070665_100007072
177 Ga0070665_100209018
178 Ga0068855_100060649
179 Ga0068855_100247241
180 Ga0068854_100114009
181 Ga0068856_100069215
182 Ga0068856_100322627
183 Ga0068859_100378733
184 Ga0068863_100137097
185 Ga0068860_100044975
186 Ga0068862_100121901
187 Ga0081455_10016196
188 Ga0081539_10004795
189 Ga0075365_10237378
190 Ga0075363_100145754
191 Ga0075362_10012850
192 Ga0075367_10011656
193 Ga0075369_10023611
194 Ga0075369_10031198
195 Ga0075366_10005234
196 Ga0075366_10091475
197 Ga0097620_100378734
198 Ga0105240_10009374
199 Ga0105240_10215374
200 Ga0105245_10386074
201 Ga0105238_10333714
202 Ga0105239_10199367
203 Ga0163162_10152966
204 Ga0157372_10294078
205 Ga0213872_10000732
206 Ga0213872_10004159
207 Ga0213872_10020375
208 Ga0213872_10020574
209 Ga0213872_10029424
210 Ga0213876_10014753
211 Ga0213876_10094463
212 Ga0209130_1001065
213 Ga0207426_1000304
214 Ga0207426_1041778
215 Ga0207699_10085589
216 Ga0207705_10123319
217 Ga0207707_10073015
218 Ga0207695_10225957
219 Ga0207649_10045674
220 Ga0207659_10312326
221 Ga0207700_10282217
222 Ga0207670_10470009
223 Ga0207661_10141720
224 Ga0207667_10085287
225 Ga0207667_10199060
226 Ga0207667_10261883
227 Ga0207640_10238583
228 Ga0207677_10248146
229 Ga0207677_10369746
230 Ga0207703_10191430
231 Ga0207703_10475699
232 Ga0207702_10064717
233 Ga0207702_10252823
234 Ga0207641_10483680
235 Ga0207674_10021526
236 Ga0207675_100350453
237 Ga0207698_10035854
238 Ga0268266_10005033
239 Ga0268266_10012593
240 Ga0268265_10107729
241 Ga0268264_10115452
242 Ga0265334_10028009
243 Ga0265324_10000233
244 Ga0265332_10096370
245 Ga0265328_10004426
246 Ga0265320_10000933
247 Ga0265331_10000147
248 Ga0265313_10000061
249 Ga0265313_10038210
250 Ga0265314_10016346
251 Ga0373931_0223239
252 Ga0373935_0225895
253 Ga0373927_0360747
254 Ga0395899_0014583
255 Ga0395899_0029032
256 Ga0395900_0004821
257 Ga0395900_0039620
258 Ga0395900_0100321
259 Ga0395898_0024786
260 Ga0436364_0800249
261 Ga0395901_0001620
262 Ga0395901_0002390
263 Ga0395901_0010183
264 Ga0395901_0031991
265 Ga0436365_0282050
266 Ga0436365_1365133
267 Ga0436361_0059703
268 Ga0436361_0138169
269 Ga0436361_0177304
270 Ga0436361_0190588
271 Ga0436361_0340524
272 Ga0436361_0429880
273 Ga0436361_0446422
274 Ga0436361_0454763
275 Ga0436361_0488457
276 Ga0436361_0782145
277 Ga0436361_0784433
278 Ga0436361_0832657
279 Ga0436361_1037541
280 Ga0436361_1221227
281 Ga0439431_0035922
282 Ga0453683_0060991
283 Ga0466963_0082024
284 Ga0453684_0345683
285 Ga0466957_0035720
286 Ga0466957_0060875
287 Ga0451576_0013720
288 Ga0451576_0090940
289 Ga0451576_0103326
290 Ga0466958_0000716
291 Ga0466967_0035719
292 Ga0495610_0037943
293 Ga0496103_0199399
294 Ga0496104_0116588
295 Ga0496106_0053374
296 Ga0496108_0068350
297 Ga0496110_0595122
298 Ga0496112_0171014
299 Ga0496112_0405029
300 Ga0501034_0001400
301 Ga0501034_0338542
302 Ga0501068_0002303
303 Ga0501080_0473413
304 Ga0501044_0011590
305 Ga0501044_0104002
306 nmdc:mga03683_42_c1
307 nmdc:mga00v17_111909_c1
308 nmdc:mga0yw44_166442_c1
309 nmdc:mga0yw44_243815_c1
310 nmdc:mga0yw44_2477_c1
311 nmdc:mga0k408_16481_c1
312 nmdc:mga0k408_277139_c1
313 nmdc:mga0k408_3_c1
314 nmdc:mga06z11_117247_c1
315 nmdc:mga06z11_209999_c1
316 nmdc:mga08y16_463236_c1
317 nmdc:mga0sz30_16848_c1
318 nmdc:mga0sz30_32547_c1
319 Ga0495619_0144751
320 Ga0500642_0083397
321 Ga0500568_0001428
322 Ga0500616_0001894
323 Ga0500620_015685
324 2883357948
325 2928027598
326 2984558109
327 2984567524
328 2993358577

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00398

RrnaAD

Ribosomal RNA adenine dimethylase

42

299

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
4jxj-assembly1.cif.gz_A crystal structure of ribosomal rna small subunit methyltransferase a from rickettsia bellii determined by iodide sad phasing 0.9559 16 258
7pnt-assembly1.cif.gz_c assembly intermediate of mouse mitochondrial ribosome small subunit without ms37 in complex with rbfa and tfb1m 0.9475 15 266
4jxj-assembly1.cif.gz_A crystal structure of ribosomal rna small subunit methyltransferase a from rickettsia bellii determined by iodide sad phasing 0.9409 16 258
3tqs-assembly2.cif.gz_B structure of the dimethyladenosine transferase (ksga) from coxiella burnetii 0.9314 15 258
4gc5-assembly1.cif.gz_A crystal structure of murine tfb1m 0.9308 2 266
ID Description Score Start End Superfamily
4jxjA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.969 16 196 3.40.50.150
af_Q58435_1_185_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9616 7 196 3.40.50.150
4jxjA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9586 16 196 3.40.50.150
af_Q54M56_2_236_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9564 2 198 3.40.50.150
af_Q58435_1_185_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.9516 7 196 3.40.50.150
ID Description Score Start End GO Terms
AF-A0A3D5Q6L7-F1-model_v4 16S rRNA (Adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase 0.9812 110 196 GO:0000179
GO:0003723
GO:0005829
AF-A0A539CV97-F1-model_v4 Ribosomal RNA small subunit methyltransferase A (EC 2.1.1.182) (16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase) (16S rRNA dimethyladenosine transferase) (16S rRNA dimethylase) (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) 0.9792 2 266 GO:0003723
GO:0005829
GO:0052908
AF-A0A350LVW9-F1-model_v4 16S rRNA (Adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase 0.9739 2 221 GO:0000179
GO:0003723
GO:0005829
AF-A0A506URF8-F1-model_v4 Ribosomal RNA small subunit methyltransferase A (EC 2.1.1.182) (16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase) (16S rRNA dimethyladenosine transferase) (16S rRNA dimethylase) (S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase) 0.9737 2 267 GO:0003723
GO:0005829
GO:0052908
AF-A0A444TS96-F1-model_v4 deleted 0.9736 7 153

Map