F244780

General Info

Members Datasets Scaffolds Average Seq Length
164 105 147 341

Family's Representative Sequence

Representative Sequence 3300049570|Ga0501033_0218584|Ga0501033_0218584_53_1135
Length 360
Sequence MAVAHGGADAYGGATSMKKMLNTIYVTTEGAALRKDGENLVADVDNAEKSRVPLHMLSAVVVFGAVFVSPPLMAALAAAGITLTFLDRNGHFQARMEGPVSGNILLRRAQYRLCDAPEDIVRSIVIGKVANQRAVLMRSLRDYGETYEDTARNAIGIVTDRLAHILRRVERADDTLEKMRGSEGEAANLYFSVFDHLIRSPDPEMRWRGRSRRPPLDAVNALLSFLYTLLTHDCRSALESVGLDPAAGFLHRDRPGRPSLALDLMEEMRPVLADRLALSLINRRQLRAWDFTVQDGGAVLMQEDARKTVLTAWQERKREERIHPFLEEKAPFGLVPYLQAQMLARHLRGDLDAYPPWFWK

Samples

Sample ID Description Type Environment
1 2513237084 Rhizobium leguminosarum bv. viciae UPM1131 Isolate Nodule
2 2597490356 Azospirillum brasilense sp7 Isolate Unclassified
3 2643221550 Mesorhizobium sp. Root552 Isolate Unclassified
4 2643221562 Rhodanobacter sp. Root561 Isolate Unclassified
5 2643221564 Mesorhizobium sp. Root157 Isolate Unclassified
6 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
7 2854601825 Dickeya dianthicola SS70 Isolate Stem Tuber
8 2855020534 Paracoccus endophyticus SYSUP0003 Isolate Stem Tuber
9 2883577096 Roseococcus sp. SYP-B2431 Isolate Rhizosphere
10 2884298095 Microvirga thermotolerans HR1 Isolate Rhizosphere
11 2889790730 Chelativorans xinjiangense lm93 Isolate Rhizosphere
12 2898795034 Rhodobacter sp. SGA-6-6 Isolate Rhizosphere
13 2899259804 Paracoccus aeridis JC501 Isolate Rhizosphere
14 3003665799 Methylobacterium aquaticum BG2 Isolate Unclassified
15 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
16 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
17 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
18 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
19 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
20 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
21 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
22 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
23 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
24 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
25 3300009011 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG Metagenome Rhizosphere
26 3300009092 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG Metagenome Rhizosphere
27 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
28 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
29 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
30 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
31 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
32 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
33 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
34 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
35 3300025735 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
45 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
46 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
47 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
48 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
49 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
50 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
51 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
52 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
53 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
54 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
55 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
56 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
57 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
58 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
59 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
60 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
61 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
62 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
63 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
64 3300041459 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_11 MetaG Metagenome Rhizoplane
65 3300041462 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_8 MetaG Metagenome Rhizoplane
66 3300041463 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_7 MetaG Metagenome Rhizoplane
67 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
68 3300041511 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_12 MetaG Metagenome Unclassified
69 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
70 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
71 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
72 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
73 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
74 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
75 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
76 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
77 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
78 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
79 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
80 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
81 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
82 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
83 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
84 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
85 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
86 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
91 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
92 3300049649 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J5_A_0_drought Metagenome Rhizosphere
93 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
94 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
96 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
97 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
98 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
99 3300053122 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 endosphere Metagenome Endosphere
100 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
101 3300053161 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 endosphere Metagenome Endosphere
102 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
103 643348564 Methylobacterium nodulans ORS 2060 Isolate Nodule
104 8005658619 Rhizobium terrae CC-HIH110 Isolate Unclassified
105 8021648035 Xanthomonas sp. LMG 12461 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 89.63
Metatranscriptomes 0
Isolates 10.37

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.44
Nodule 1.22
Rhizoplane 2.44
Rhizosphere 74.39
Stem 0
Stem Tuber 1.22
Unclassified 18.29

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10152238 3300003316 Bacteria 3711
2 rootH1_10389702 3300003323 Bacteria 1468
3 Ga0070658_10169436 3300005327 Bacteria 1834
4 Ga0070683_100019141 3300005329 Bacteria 6077
5 Ga0070680_100236821 3300005336 Bacteria 1542
6 Ga0070668_100112227 3300005347 Bacteria 2171
7 Ga0070669_100000898 3300005353 Bacteria 21669
8 Ga0070681_10058689 3300005458 Bacteria 3828
9 Ga0068855_100003262 3300005563 Bacteria 19853
10 Ga0068855_100077635 3300005563 Bacteria 3853
11 Ga0068855_100263991 3300005563 Unclassified 1917
12 Ga0068852_100105037 3300005616 Bacteria 2558
13 Ga0105251_10003019 3300009011 Bacteria 12554
14 Ga0105250_10002158 3300009092 Bacteria 10096
15 Ga0105240_10002693 3300009093 Bacteria 28274
16 Ga0105240_10068917 3300009093 Bacteria 4380
17 Ga0105240_10073097 3300009093 Bacteria 4235
18 Ga0105238_10020066 3300009551 Bacteria 6803
19 Ga0157371_10007015 3300013102 Bacteria 9167
20 Ga0157371_10110438 3300013102 Bacteria 1952
21 Ga0157370_10010356 3300013104 Bacteria 9836
22 Ga0157370_10222659 3300013104 Unclassified 1747
23 Ga0157370_10265764 3300013104 Bacteria 1585
24 Ga0157369_10017404 3300013105 Bacteria 8078
25 Ga0213872_10001368 3300021361 Bacteria 16070
26 Ga0213874_10052552 3300021377 Unclassified 1254
27 Ga0213876_10006433 3300021384 Bacteria 6404
28 Ga0207713_1001408 3300025735 Bacteria 19388
29 Ga0207705_10178278 3300025909 Bacteria 1603
30 Ga0207707_10040641 3300025912 Bacteria 4062
31 Ga0207695_10017536 3300025913 Bacteria 8327
32 Ga0207695_10028515 3300025913 Bacteria 6188
33 Ga0207660_10271001 3300025917 Bacteria 1345
34 Ga0207681_10000263 3300025923 Bacteria 40042
35 Ga0207694_10038668 3300025924 Bacteria 3669
36 Ga0207661_10207487 3300025944 Bacteria 1725
37 Ga0207667_10012260 3300025949 Bacteria 9895
38 Ga0207667_10038976 3300025949 Bacteria 5067
39 Ga0207667_10232332 3300025949 Unclassified 1888
40 Ga0265318_10016154 3300028577 Bacteria 3089
41 Ga0265328_10000114 3300031239 Bacteria 38034
42 Ga0265316_10033549 3300031344 Bacteria 4179
43 Ga0395899_0000008 3300037312 Bacteria 567572
44 Ga0395899_0000059 3300037312 Bacteria 213004
45 Ga0395900_0000017 3300037418 Bacteria 369602
46 Ga0395900_0003288 3300037418 Bacteria 17493
47 Ga0395900_0282351 3300037418 Bacteria 1652
48 Ga0395898_0000030 3300037466 Bacteria 369577
49 Ga0395898_0000386 3300037466 Bacteria 96561
50 Ga0395898_0001251 3300037466 Bacteria 37818
51 Ga0395905_0000056 3300037471 Bacteria 209230
52 Ga0436364_0643134 3300037853 Bacteria 2061
53 Ga0395901_0000015 3300038443 Bacteria 373388
54 Ga0395901_0159857 3300038443 Bacteria 2366
55 Ga0400484_32458 3300038725 Bacteria 9541
56 Ga0400490_20258 3300038726 Bacteria 10936
57 Ga0400490_60913 3300038726 Bacteria 8697
58 Ga0400491_15798 3300038727 Bacteria 3442
59 Ga0400485_20630 3300038735 Bacteria 12307
60 Ga0400486_08551 3300038742 Bacteria 9590
61 Ga0400483_089481 3300039062 Bacteria 3398
62 Ga0400483_203222 3300039062 Bacteria 13818
63 Ga0400483_243864 3300039062 Bacteria 12951
64 Ga0400487_37891 3300039110 Bacteria 12283
65 Ga0436365_0479634 3300039437 Bacteria 7894
66 Ga0436360_0417631 3300039438 Bacteria 16189
67 Ga0436360_0640334 3300039438 Bacteria 2866
68 Ga0436360_0983058 3300039438 Bacteria 1439
69 Ga0436361_0448029 3300039447 Bacteria 31964
70 Ga0436361_1005188 3300039447 Bacteria 1146
71 Ga0436363_0893954 3300039450 Bacteria 1771
72 Ga0451800_0518644 3300041459 Bacteria 2111
73 Ga0451806_571348 3300041462 Bacteria 1937
74 Ga0451804_0963875 3300041463 Bacteria 1770
75 Ga0451807_0866512 3300041486 Bacteria 1929
76 Ga0451855_1350336 3300041511 Bacteria 1619
77 Ga0451577_0000049 3300042876 Bacteria 304750
78 Ga0451577_0094301 3300042876 Bacteria 2672
79 Ga0451577_0125828 3300042876 Bacteria 2296
80 Ga0453683_0001234 3300044673 Bacteria 22905
81 Ga0453683_0001358 3300044673 Bacteria 21409
82 Ga0453683_0005736 3300044673 Bacteria 8615
83 Ga0453683_0026069 3300044673 Bacteria 3712
84 Ga0466966_0001493 3300044684 Bacteria 14996
85 Ga0466966_0069556 3300044684 Bacteria 2208
86 Ga0466961_0000626 3300044693 Bacteria 22142
87 Ga0466961_0009764 3300044693 Bacteria 6108
88 Ga0453684_0000156 3300044712 Bacteria 304753
89 Ga0453684_0001803 3300044712 Bacteria 56851
90 Ga0453684_0059064 3300044712 Bacteria 4949
91 Ga0453684_0220716 3300044712 Bacteria 2196
92 Ga0466970_0130848 3300044765 Bacteria 1378
93 Ga0466957_0251313 3300044842 Bacteria 1176
94 Ga0451576_0001520 3300045051 Bacteria 39055
95 Ga0451576_0003011 3300045051 Bacteria 23815
96 Ga0451576_0005785 3300045051 Bacteria 15384
97 Ga0466958_0008865 3300045836 Bacteria 5587
98 Ga0496116_0005551 3300048919 Bacteria 11636
99 Ga0496117_0007727 3300048920 Bacteria 10396
100 Ga0496118_0008958 3300048921 Bacteria 10211
101 Ga0496121_0124352 3300048924 Bacteria 1942
102 Ga0496124_0004554 3300048927 Bacteria 16116
103 Ga0501033_0005100 3300049570 Bacteria 10450
104 Ga0501033_0110565 3300049570 Bacteria 2000
105 Ga0501033_0155091 3300049570 Bacteria 1650
106 Ga0501033_0218584 3300049570 Bacteria 1357
107 Ga0501033_0224317 3300049570 Bacteria 1337
108 Ga0501034_0081984 3300049571 Bacteria 3228
109 Ga0501034_0204924 3300049571 Bacteria 1929
110 Ga0501034_0269991 3300049571 Bacteria 1642
111 Ga0501034_0304030 3300049571 Bacteria 1531
112 Ga0501036_0075143 3300049572 Bacteria 2858
113 Ga0501038_0061968 3300049574 Bacteria 3197
114 Ga0501043_0029166 3300049579 Bacteria 4333
115 Ga0501043_0259582 3300049579 Bacteria 1337
116 Ga0501046_0045534 3300049580 Bacteria 3485
117 Ga0501046_0058046 3300049580 Bacteria 3035
118 Ga0501047_0011423 3300049581 Bacteria 8405
119 Ga0501047_0024602 3300049581 Bacteria 5780
120 Ga0501047_0173126 3300049581 Bacteria 2027
121 Ga0501048_0082324 3300049582 Bacteria 2270
122 Ga0501070_0091526 3300049586 Bacteria 2517
123 Ga0501070_0096279 3300049586 Bacteria 2449
124 Ga0501070_0170416 3300049586 Bacteria 1793
125 Ga0501070_0212093 3300049586 Bacteria 1589
126 Ga0501070_0241515 3300049586 Bacteria 1478
127 Ga0501198_020526 3300049649 Unclassified 1047
128 Ga0501083_0066259 3300049744 Bacteria 2405
129 Ga0501035_0006291 3300049822 Bacteria 11169
130 Ga0501035_0006357 3300049822 Bacteria 11109
131 Ga0501035_0032309 3300049822 Bacteria 4762
132 Ga0501035_0036703 3300049822 Bacteria 4441
133 Ga0501035_0092835 3300049822 Bacteria 2656
134 Ga0501035_0158155 3300049822 Bacteria 1963
135 Ga0501035_0399915 3300049822 Bacteria 1143
136 Ga0501044_0000305 3300049823 Bacteria 61723
137 Ga0501044_0023170 3300049823 Bacteria 6608
138 Ga0501044_0126292 3300049823 Bacteria 2555
139 Ga0501044_0156505 3300049823 Bacteria 2258
140 Ga0501044_0366689 3300049823 Bacteria 1358
141 nmdc:mga0n895_651281_c1 3300050512 Bacteria 1052
142 Ga0495619_0007653 3300053085 Bacteria 6840
143 Ga0500651_0000808 3300053093 Bacteria 15315
144 Ga0500608_001556 3300053122 Bacteria 8227
145 Ga0500624_008335 3300053157 Bacteria 1449
146 Ga0500634_0007331 3300053161 Bacteria 5430
147 Ga0501082_0051659 3300060353 Bacteria 3543

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 iso_pu_bacteria 3003665799 3003667135 277
2 3300044842 Ga0466957_0251313 Ga0466957_0251313_40_930 296
3 3300039447 Ga0436361_1005188 Ga0436361_1005188_24_947 299
4 3300013104 Ga0157370_10265764 Ga0157370_102657643 304
5 3300050512 nmdc:mga0n895_651281_c1 nmdc:mga0n895_651281_c1_78_995 304
6 3300037312 Ga0395899_0000008 Ga0395899_0000008_223627_224544 305
7 3300037418 Ga0395900_0003288 Ga0395900_0003288_521_1438 305
8 3300037466 Ga0395898_0000386 Ga0395898_0000386_6813_7730 305
9 3300025949 Ga0207667_10038976 Ga0207667_100389762 326
10 3300031344 Ga0265316_10033549 Ga0265316_100335492 326
11 3300044712 Ga0453684_0059064 Ga0453684_0059064_1960_2988 333
12 iso_pu_bacteria 2854601825 2854602181 333
13 3300038725 Ga0400484_32458 Ga0400484_32458_607_1623 338
14 3300038726 Ga0400490_20258 Ga0400490_20258_2717_3733 338
15 3300038726 Ga0400490_60913 Ga0400490_60913_7129_8145 338
16 3300038727 Ga0400491_15798 Ga0400491_15798_587_1603 338
17 3300038735 Ga0400485_20630 Ga0400485_20630_5903_6919 338
18 3300038742 Ga0400486_08551 Ga0400486_08551_5955_6971 338
19 3300039062 Ga0400483_089481 Ga0400483_089481_2136_3152 338
20 3300039062 Ga0400483_203222 Ga0400483_203222_903_1919 338
21 3300039062 Ga0400483_243864 Ga0400483_243864_7812_8828 338
22 3300039110 Ga0400487_37891 Ga0400487_37891_5411_6427 338
23 3300048927 Ga0496124_0004554 Ga0496124_0004554_2582_3598 338
24 3300049574 Ga0501038_0061968 Ga0501038_0061968_434_1453 338
25 3300049581 Ga0501047_0011423 Ga0501047_0011423_595_1611 338
26 3300049586 Ga0501070_0091526 Ga0501070_0091526_709_1728 338
27 3300049649 Ga0501198_020526 Ga0501198_020526_20_1036 338
28 3300049822 Ga0501035_0092835 Ga0501035_0092835_1468_2484 338
29 3300049823 Ga0501044_0000305 Ga0501044_0000305_38587_39603 338
30 3300049823 Ga0501044_0156505 Ga0501044_0156505_721_1737 338
31 iso_pu_bacteria 2513237084 2513570737 339
32 iso_pu_bacteria 2643221550 2643770118 339
33 iso_pu_bacteria 2643221564 2643839435 339
34 iso_pu_bacteria 2855020534 2855022558 339
35 iso_pu_bacteria 2889790730 2889792206 339
36 iso_pu_bacteria 2898795034 2898797149 339
37 iso_pu_bacteria 2899259804 2899262274 339
38 iso_pu_bacteria 8005658619 8005660235 339
39 iso_pu_bacteria 2643221562 2643828844 340
40 iso_pu_bacteria 8021648035 8021648857 340
41 3300021361 Ga0213872_10001368 Ga0213872_100013682 341
42 3300039447 Ga0436361_0448029 Ga0436361_0448029_14638_15666 341
43 3300053085 Ga0495619_0007653 Ga0495619_0007653_5035_6063 341
44 3300053122 Ga0500608_001556 Ga0500608_001556_6618_7646 341
45 iso_pu_bacteria 643348564 643664290 341
46 iso_pu_bacteria 2597490356 2599105437 342
47 iso_pu_bacteria 2846952575 2846954879 342
48 iso_pu_bacteria 2883577096 2883579783 342
49 iso_pu_bacteria 2884298095 2884299100 342
50 3300005329 Ga0070683_100019141 Ga0070683_1000191412 343
51 3300005336 Ga0070680_100236821 Ga0070680_1002368212 343
52 3300005563 Ga0068855_100003262 Ga0068855_10000326212 343
53 3300005563 Ga0068855_100077635 Ga0068855_1000776352 343
54 3300005563 Ga0068855_100263991 Ga0068855_1002639912 343
55 3300005616 Ga0068852_100105037 Ga0068852_1001050372 343
56 3300009093 Ga0105240_10068917 Ga0105240_100689172 343
57 3300009093 Ga0105240_10073097 Ga0105240_100730972 343
58 3300009551 Ga0105238_10020066 Ga0105238_100200666 343
59 3300013104 Ga0157370_10222659 Ga0157370_102226591 343
60 3300013105 Ga0157369_10017404 Ga0157369_100174046 343
61 3300025909 Ga0207705_10178278 Ga0207705_101782781 343
62 3300025913 Ga0207695_10028515 Ga0207695_100285152 343
63 3300025917 Ga0207660_10271001 Ga0207660_102710012 343
64 3300025924 Ga0207694_10038668 Ga0207694_100386684 343
65 3300025944 Ga0207661_10207487 Ga0207661_102074872 343
66 3300025949 Ga0207667_10012260 Ga0207667_100122603 343
67 3300025949 Ga0207667_10232332 Ga0207667_102323322 343
68 3300028577 Ga0265318_10016154 Ga0265318_100161543 343
69 3300031239 Ga0265328_10000114 Ga0265328_100001143 343
70 3300037312 Ga0395899_0000059 Ga0395899_0000059_207061_208095 343
71 3300037418 Ga0395900_0000017 Ga0395900_0000017_207061_208095 343
72 3300037418 Ga0395900_0282351 Ga0395900_0282351_237_1271 343
73 3300037466 Ga0395898_0000030 Ga0395898_0000030_207036_208070 343
74 3300037466 Ga0395898_0001251 Ga0395898_0001251_34511_35545 343
75 3300037471 Ga0395905_0000056 Ga0395905_0000056_1136_2170 343
76 3300037853 Ga0436364_0643134 Ga0436364_0643134_436_1467 343
77 3300038443 Ga0395901_0000015 Ga0395901_0000015_161508_162542 343
78 3300038443 Ga0395901_0159857 Ga0395901_0159857_626_1660 343
79 3300042876 Ga0451577_0000049 Ga0451577_0000049_49726_50757 343
80 3300042876 Ga0451577_0125828 Ga0451577_0125828_665_1696 343
81 3300044673 Ga0453683_0001234 Ga0453683_0001234_13113_14144 343
82 3300044673 Ga0453683_0001358 Ga0453683_0001358_2626_3657 343
83 3300044673 Ga0453683_0026069 Ga0453683_0026069_18_1049 343
84 3300044684 Ga0466966_0001493 Ga0466966_0001493_6825_7856 343
85 3300044693 Ga0466961_0009764 Ga0466961_0009764_744_1775 343
86 3300044712 Ga0453684_0000156 Ga0453684_0000156_253997_255028 343
87 3300044712 Ga0453684_0001803 Ga0453684_0001803_22521_23552 343
88 3300045051 Ga0451576_0001520 Ga0451576_0001520_31996_33027 343
89 3300045051 Ga0451576_0003011 Ga0451576_0003011_16330_17361 343
90 3300045051 Ga0451576_0005785 Ga0451576_0005785_7262_8293 343
91 3300045836 Ga0466958_0008865 Ga0466958_0008865_3867_4901 343
92 3300049570 Ga0501033_0110565 Ga0501033_0110565_295_1329 343
93 3300049570 Ga0501033_0218584 Ga0501033_0218584_53_1135 343
94 3300049570 Ga0501033_0224317 Ga0501033_0224317_237_1271 343
95 3300049571 Ga0501034_0204924 Ga0501034_0204924_412_1446 343
96 3300049571 Ga0501034_0269991 Ga0501034_0269991_26_1060 343
97 3300049571 Ga0501034_0304030 Ga0501034_0304030_163_1197 343
98 3300049572 Ga0501036_0075143 Ga0501036_0075143_95_1129 343
99 3300049579 Ga0501043_0029166 Ga0501043_0029166_458_1492 343
100 3300049580 Ga0501046_0045534 Ga0501046_0045534_1891_2925 343
101 3300049581 Ga0501047_0173126 Ga0501047_0173126_667_1701 343
102 3300049582 Ga0501048_0082324 Ga0501048_0082324_526_1560 343
103 3300049586 Ga0501070_0096279 Ga0501070_0096279_868_1902 343
104 3300049586 Ga0501070_0170416 Ga0501070_0170416_495_1529 343
105 3300049586 Ga0501070_0212093 Ga0501070_0212093_530_1564 343
106 3300049586 Ga0501070_0241515 Ga0501070_0241515_301_1335 343
107 3300049822 Ga0501035_0032309 Ga0501035_0032309_3041_4075 343
108 3300049822 Ga0501035_0036703 Ga0501035_0036703_1209_2243 343
109 3300049822 Ga0501035_0158155 Ga0501035_0158155_224_1258 343
110 3300049822 Ga0501035_0399915 Ga0501035_0399915_91_1125 343
111 3300049823 Ga0501044_0023170 Ga0501044_0023170_1068_2102 343
112 3300049823 Ga0501044_0126292 Ga0501044_0126292_880_1914 343
113 3300049823 Ga0501044_0366689 Ga0501044_0366689_147_1229 343
114 3300053157 Ga0500624_008335 Ga0500624_008335_224_1258 343
115 3300053161 Ga0500634_0007331 Ga0500634_0007331_3575_4609 343
116 3300003323 rootH1_10389702 rootH1_103897022 344
117 3300005327 Ga0070658_10169436 Ga0070658_101694361 344
118 3300009093 Ga0105240_10002693 Ga0105240_1000269318 344
119 3300013102 Ga0157371_10007015 Ga0157371_100070152 344
120 3300013102 Ga0157371_10110438 Ga0157371_101104381 344
121 3300013104 Ga0157370_10010356 Ga0157370_100103565 344
122 3300021377 Ga0213874_10052552 Ga0213874_100525522 344
123 3300021384 Ga0213876_10006433 Ga0213876_100064332 344
124 3300025913 Ga0207695_10017536 Ga0207695_100175367 344
125 3300039437 Ga0436365_0479634 Ga0436365_0479634_908_1942 344
126 3300039438 Ga0436360_0417631 Ga0436360_0417631_613_1647 344
127 3300039450 Ga0436363_0893954 Ga0436363_0893954_164_1198 344
128 3300041459 Ga0451800_0518644 Ga0451800_0518644_157_1191 344
129 3300041462 Ga0451806_571348 Ga0451806_571348_708_1742 344
130 3300041463 Ga0451804_0963875 Ga0451804_0963875_692_1726 344
131 3300041486 Ga0451807_0866512 Ga0451807_0866512_850_1884 344
132 3300041511 Ga0451855_1350336 Ga0451855_1350336_539_1573 344
133 3300042876 Ga0451577_0094301 Ga0451577_0094301_1474_2508 344
134 3300044693 Ga0466961_0000626 Ga0466961_0000626_1863_2918 344
135 3300044712 Ga0453684_0220716 Ga0453684_0220716_1058_2092 344
136 3300048920 Ga0496117_0007727 Ga0496117_0007727_794_1828 344
137 3300048921 Ga0496118_0008958 Ga0496118_0008958_676_1710 344
138 3300049570 Ga0501033_0005100 Ga0501033_0005100_1515_2549 344
139 3300049822 Ga0501035_0006291 Ga0501035_0006291_7260_8294 344
140 3300005458 Ga0070681_10058689 Ga0070681_100586894 345
141 3300025912 Ga0207707_10040641 Ga0207707_100406414 345
142 3300005347 Ga0070668_100112227 Ga0070668_1001122272 346
143 3300005353 Ga0070669_100000898 Ga0070669_1000008988 346
144 3300009011 Ga0105251_10003019 Ga0105251_100030192 346
145 3300009092 Ga0105250_10002158 Ga0105250_100021587 346
146 3300025735 Ga0207713_1001408 Ga0207713_100140810 346
147 3300025923 Ga0207681_10000263 Ga0207681_1000026311 346
148 3300039438 Ga0436360_0640334 Ga0436360_0640334_59_1099 346
149 3300039438 Ga0436360_0983058 Ga0436360_0983058_258_1298 346
150 3300044673 Ga0453683_0005736 Ga0453683_0005736_634_1674 346
151 3300044684 Ga0466966_0069556 Ga0466966_0069556_725_1765 346
152 3300044765 Ga0466970_0130848 Ga0466970_0130848_18_1058 346
153 3300048919 Ga0496116_0005551 Ga0496116_0005551_9791_10831 346
154 3300048924 Ga0496121_0124352 Ga0496121_0124352_620_1660 346
155 3300049570 Ga0501033_0155091 Ga0501033_0155091_27_1070 346
156 3300049571 Ga0501034_0081984 Ga0501034_0081984_612_1655 346
157 3300049579 Ga0501043_0259582 Ga0501043_0259582_235_1275 346
158 3300049580 Ga0501046_0058046 Ga0501046_0058046_598_1641 346
159 3300049581 Ga0501047_0024602 Ga0501047_0024602_551_1594 346
160 3300049744 Ga0501083_0066259 Ga0501083_0066259_525_1568 346
161 3300049822 Ga0501035_0006357 Ga0501035_0006357_1345_2388 346
162 3300053093 Ga0500651_0000808 Ga0500651_0000808_548_1588 346
163 3300060353 Ga0501082_0051659 Ga0501082_0051659_1890_2933 346
164 3300003316 rootH1_10152238 rootH1_101522382 359

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01867

Cas_Cas1

CRISPR associated protein Cas1

24

315

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
4n06-assembly1.cif.gz_A crystal structure of cas1 from archaeoglobus fulgidus and its nucleolytic activity 0.8741 5 334
3nke-assembly1.cif.gz_A high resolution structure of the c-terminal domain crisp-associated protein cas1 from escherichia coli str. k-12 0.8498 84 301
7mi4-assembly1.cif.gz_A symmetrical pam-pam prespacer bound cas4/cas1/cas2 complex 0.8459 1 334
7cr8-assembly6.cif.gz_A synechocystis cas1-cas2-prespacerl complex 0.8356 6 334
4xtk-assembly1.cif.gz_A structure of tm1797, a cas1 protein from thermotoga maritima 0.8347 5 337
ID Description Score Start End Superfamily
af_P9WPJ5_2_80_3.100.10.20 Alpha Beta;Ribosomal Protein L15; Chain: K; domain 2;Ribosomal Protein L15; Chain: K; domain 2;CRISPR-associated endonuclease Cas1, N-terminal domain 0.9372 6 83 3.100.10.20
4n06B01 Alpha Beta;Ribosomal Protein L15; Chain: K; domain 2;Ribosomal Protein L15; Chain: K; domain 2;CRISPR-associated endonuclease Cas1, N-terminal domain 0.9215 6 83 3.100.10.20
af_P9WPJ5_2_80_3.100.10.20 Alpha Beta;Ribosomal Protein L15; Chain: K; domain 2;Ribosomal Protein L15; Chain: K; domain 2;CRISPR-associated endonuclease Cas1, N-terminal domain 0.9145 6 83 3.100.10.20
af_P9WPJ5_86_325_1.20.120.920 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);CRISPR-associated endonuclease Cas1, C-terminal domain 0.9144 91 334 1.20.120.920
4xtkA02 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);CRISPR-associated endonuclease Cas1, C-terminal domain 0.9103 90 337 1.20.120.920
ID Description Score Start End GO Terms
AF-Q2JNV1-F1-model_v4 CRISPR-associated endonuclease Cas1 0.9966 5 71 GO:0003676
GO:0004519
GO:0043571
GO:0046872
GO:0051607
AF-A0A2T2RBG1-F1-model_v4 CRISPR-associated endonuclease Cas1 0.9889 5 80 GO:0003677
GO:0004519
GO:0043571
GO:0046872
GO:0051607
AF-A0A645DPD0-F1-model_v4 CRISPR-associated endonuclease Cas1 (EC 3.1.-.-) 0.9868 203 330 GO:0003677
GO:0004519
GO:0043571
GO:0046872
GO:0051607
AF-A0A4Q2XSM5-F1-model_v4 CRISPR-associated endonuclease Cas1 0.9836 248 331 GO:0003677
GO:0004519
GO:0043571
GO:0046872
GO:0051607
AF-A0A3M2CAF4-F1-model_v4 Subtype I-C CRISPR-associated endonuclease Cas1 0.9829 1 77 GO:0003676
GO:0004519
GO:0043571
GO:0046872
GO:0051607

Feature Viewer

pLDDT pTM Quality
85.94 0.72 High
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Predicted Structure (AlphaFold2)

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