F243381

General Info

Members Datasets Scaffolds Average Seq Length
164 129 328 494

Family's Representative Sequence

Representative Sequence 3300005467|Ga0070706_100005426|Ga0070706_1000054262
Length 596
Sequence LPATAAGCGRARTVRHRHDATWVGPGSSWGKTGAVPGAEDVAVAVRGRMRRRRFTPPRARRIRRDRMYRLPSMASPPFAAMLARVRSAAVLGVDAYPVEVEVDLSNGLPSLSTVGLPQSAVKEGRERVHAAIVNAGFEFPLRRITINLAPADRPKAGSGFDLAIALGILVASGQVPPGALAELVVLGEIGLEGDVRPVRGALPVAQCARANGARCLVVPAPNAPEAALVEGLEVRAAASLSEVCGFLAGRVGLPLARANVGAALRAAAADSVDFAEVRSQAVAKRALEIAAAGGHNLLMIGPPGAGKTMLARRLPTILPSLSLEEALEATKIHSVAGTLPEGHPLVAARPFRAPHHTVSDAGMIGGGSWPRPGEVSLSHAGVLFLDELPEFRRNVLEALRQPLEDGVVTLSRAAMSLSFPARFMLAAAMNPCLCGYLGDALRECRCDPAAIERYRARVSGPLLDRIDIHLHVPAVAPGDLAAGGPPAEPSAAIRARVEAARRIQRERFRAQPGIYSNAHMTARDVRRCCRLGDPADALLRQAIAKLGLSARAHSRVLKLARTIADLGGAEDIAPAHVSEAIQYRSLDRAPRPAVPA

Samples

Sample ID Description Type Environment
1 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
2 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
3 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
4 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
5 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
6 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
7 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
8 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
9 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
10 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
11 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
12 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
13 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
14 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
15 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
16 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
17 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
20 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
21 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
22 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
23 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
24 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
25 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
26 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
27 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
28 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
29 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
30 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
31 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
32 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
33 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
34 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
35 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
36 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
37 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
38 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
39 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
40 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
41 3300025901 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4 (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
58 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
59 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
60 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
61 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
62 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
63 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
64 3300032133 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JBrBrA Metagenome Rhizosphere
65 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
66 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
67 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
68 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
69 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
70 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
71 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
72 3300037588 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA Metagenome Rhizosphere
73 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
74 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
75 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
76 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
77 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
78 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
79 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
80 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
81 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
82 3300046461 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 rhizosphere Metagenome Rhizosphere
83 3300046462 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 rhizosphere Metagenome Rhizosphere
84 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
85 3300046511 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-331-CL2_55_18 rhizosphere Metagenome Rhizosphere
86 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
87 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
88 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
89 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
90 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
91 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
92 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
93 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
94 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
95 3300046689 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere Metagenome Rhizosphere
96 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
97 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
98 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
99 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
100 3300047673 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL3_81_33 rhizosphere Metagenome Rhizosphere
101 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
102 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
103 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
104 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
105 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
106 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
107 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
108 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
109 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
110 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
111 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
112 3300049576 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_01 Metagenome Rhizosphere
113 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
114 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
115 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
116 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
117 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
118 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
119 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
120 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
121 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
122 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
123 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
124 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
125 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
126 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
127 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
128 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
129 2919497567 Shewanella putrefaciens 3469 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 99.39
Metatranscriptomes 0
Isolates 0.61

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0.61
Nodule 0
Rhizoplane 9.76
Rhizosphere 88.41
Stem 0
Stem Tuber 0
Unclassified 3.05

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070706_100005426 3300005467 Bacteria 12148
2 Ga0068869_100025086 3300005334 Bacteria 4136
3 Ga0068869_100122876 3300005334 Bacteria 1987
4 Ga0070689_100013007 3300005340 Bacteria 6013
5 Ga0070674_100066579 3300005356 Bacteria 2531
6 Ga0070673_100000887 3300005364 Bacteria 16895
7 Ga0070659_100046270 3300005366 Bacteria 3410
8 Ga0070701_10002871 3300005438 Bacteria 6716
9 Ga0070705_100016169 3300005440 Bacteria 3873
10 Ga0070700_100081056 3300005441 Unclassified 2095
11 Ga0070708_100017900 3300005445 Bacteria 5922
12 Ga0070708_100124283 3300005445 Bacteria 2383
13 Ga0070707_100002192 3300005468 Bacteria 18659
14 Ga0070698_100000235 3300005471 Bacteria 54910
15 Ga0070699_100059408 3300005518 Bacteria 3312
16 Ga0070679_100171285 3300005530 Bacteria 2144
17 Ga0070684_100072233 3300005535 Bacteria 3037
18 Ga0070686_100013478 3300005544 Bacteria 4683
19 Ga0070704_100020976 3300005549 Bacteria 4226
20 Ga0070704_100077094 3300005549 Bacteria 2440
21 Ga0068855_100209352 3300005563 Bacteria 2192
22 Ga0070702_100019969 3300005615 Bacteria 3504
23 Ga0068859_100092147 3300005617 Bacteria 3082
24 Ga0068864_100166030 3300005618 Bacteria 2010
25 Ga0068851_10035710 3300005834 Bacteria 2486
26 Ga0068870_10016661 3300005840 Bacteria 3517
27 Ga0068863_100025538 3300005841 Bacteria 5632
28 Ga0068858_100110148 3300005842 Bacteria 2571
29 Ga0075428_100008345 3300006844 Bacteria 11487
30 Ga0075428_100039925 3300006844 Bacteria 5166
31 Ga0075433_10150309 3300006852 Bacteria 2071
32 Ga0075434_100018901 3300006871 Bacteria 6660
33 Ga0075429_100006228 3300006880 Bacteria 10325
34 Ga0068865_100016318 3300006881 Bacteria 4750
35 Ga0097620_100092147 3300006931 Bacteria 3082
36 Ga0075435_100058095 3300007076 Bacteria 3132
37 Ga0111539_10291332 3300009094 Bacteria 1900
38 Ga0105245_10027746 3300009098 Bacteria 4989
39 Ga0105245_10246295 3300009098 Bacteria 1735
40 Ga0114129_10000343 3300009147 Bacteria 54262
41 Ga0114129_10005552 3300009147 Bacteria 17840
42 Ga0114129_10184061 3300009147 Bacteria 2840
43 Ga0105243_10007706 3300009148 Bacteria 8278
44 Ga0105249_10065881 3300009553 Bacteria 3333
45 Ga0105249_10146873 3300009553 Bacteria 2266
46 Ga0105239_10032251 3300010375 Bacteria 5758
47 Ga0157380_10093725 3300014326 Bacteria 2484
48 Ga0157379_10025023 3300014968 Bacteria 5299
49 Ga0207688_10009595 3300025901 Bacteria 5270
50 Ga0207654_10091674 3300025911 Bacteria 1854
51 Ga0207657_10001046 3300025919 Bacteria 29314
52 Ga0207649_10016443 3300025920 Bacteria 4173
53 Ga0207652_10028591 3300025921 Bacteria 4653
54 Ga0207646_10004866 3300025922 Bacteria 14392
55 Ga0207646_10009016 3300025922 Bacteria 9914
56 Ga0207706_10010969 3300025933 Bacteria 8262
57 Ga0207670_10003825 3300025936 Bacteria 8011
58 Ga0207704_10067636 3300025938 Unclassified 2248
59 Ga0207689_10066106 3300025942 Bacteria 2974
60 Ga0207661_10043966 3300025944 Bacteria 3527
61 Ga0207679_10013706 3300025945 Bacteria 5316
62 Ga0207678_10080347 3300026067 Bacteria 2792
63 Ga0207708_10019020 3300026075 Bacteria 5172
64 Ga0207641_10153599 3300026088 Bacteria 2087
65 Ga0207675_100022487 3300026118 Bacteria 5871
66 Ga0207428_10013772 3300027907 Bacteria 7049
67 Ga0307515_10000033 3300028794 Bacteria 357826
68 Ga0265338_10074780 3300028800 Bacteria 2879
69 Ga0265327_10002810 3300031251 Bacteria 17571
70 Ga0265316_10000140 3300031344 Bacteria 78636
71 Ga0316576_10019233 3300031727 Bacteria 4678
72 Ga0316577_10004380 3300031733 Bacteria 7284
73 Ga0316577_10031946 3300031733 Bacteria 2942
74 Ga0316583_10005315 3300032133 Bacteria 4620
75 Ga0316583_10013721 3300032133 Bacteria 2924
76 Ga0316585_10016780 3300032137 Bacteria 2208
77 Ga0373941_0004564 3300035115 Bacteria 3208
78 Ga0373943_0006993 3300035170 Bacteria 5062
79 Ga0316582_0002111 3300036647 Bacteria 9182
80 Ga0316582_0066132 3300036647 Bacteria 2329
81 Ga0316582_0115671 3300036647 Bacteria 1790
82 Ga0316584_0011950 3300036712 Bacteria 6114
83 Ga0316584_0024853 3300036712 Bacteria 4388
84 Ga0373925_0025776 3300037068 Bacteria 4299
85 Ga0395905_0000387 3300037471 Bacteria 62704
86 Ga0316581_0000266 3300037588 Bacteria 9105
87 Ga0395901_0013795 3300038443 Bacteria 8217
88 Ga0451795_0091293 3300041456 Bacteria 2386
89 Ga0451577_0003196 3300042876 Bacteria 18409
90 Ga0453683_0010439 3300044673 Bacteria 6155
91 Ga0453683_0015930 3300044673 Unclassified 4857
92 Ga0466963_0029956 3300044694 Bacteria 3507
93 Ga0453684_0001027 3300044712 Bacteria 89253
94 Ga0453684_0046584 3300044712 Bacteria 5764
95 Ga0451576_0003120 3300045051 Bacteria 23244
96 Ga0451576_0013267 3300045051 Bacteria 9220
97 Ga0451576_0031070 3300045051 Bacteria 5697
98 Ga0466967_0022880 3300045976 Bacteria 5109
99 Ga0466967_0023257 3300045976 Bacteria 5075
100 Ga0466967_0037363 3300045976 Bacteria 4155
101 Ga0466967_0040561 3300045976 Bacteria 4009
102 Ga0466967_0061148 3300045976 Bacteria 3340
103 Ga0466967_0179456 3300045976 Bacteria 1996
104 Ga0495629_0002147 3300046459 Bacteria 15270
105 Ga0495641_0002183 3300046461 Bacteria 15658
106 Ga0495651_0039134 3300046462 Bacteria 3692
107 Ga0495582_0001182 3300046473 Bacteria 14711
108 Ga0495608_0040630 3300046511 Bacteria 3116
109 Ga0495618_0036047 3300046514 Bacteria 3104
110 Ga0495618_0055171 3300046514 Bacteria 2516
111 Ga0495628_0097726 3300046516 Bacteria 2268
112 Ga0495630_0005687 3300046517 Bacteria 8813
113 Ga0495652_0020469 3300046529 Bacteria 5882
114 Ga0495640_0056173 3300046533 Bacteria 2690
115 Ga0495586_0019309 3300046535 Bacteria 3625
116 Ga0495634_0035935 3300046642 Bacteria 3390
117 Ga0495635_0050418 3300046663 Bacteria 2869
118 Ga0495599_0057630 3300046678 Bacteria 2431
119 Ga0495613_0020931 3300046689 Bacteria 4876
120 Ga0495600_0040895 3300046809 Bacteria 3021
121 Ga0495581_0016243 3300047315 Bacteria 4328
122 Ga0495674_0038636 3300047319 Bacteria 4283
123 Ga0495674_0086836 3300047319 Bacteria 2678
124 Ga0495680_0003627 3300047322 Bacteria 15101
125 Ga0495680_0027118 3300047322 Bacteria 4711
126 Ga0495593_0010324 3300047673 Bacteria 5398
127 Ga0496102_0009400 3300048905 Bacteria 8400
128 Ga0496104_0002363 3300048907 Bacteria 16295
129 Ga0496104_0188752 3300048907 Bacteria 1972
130 Ga0496106_0019826 3300048909 Bacteria 4986
131 Ga0496106_0099321 3300048909 Bacteria 2256
132 Ga0496107_0054092 3300048910 Unclassified 2897
133 Ga0496108_0191926 3300048911 Unclassified 1770
134 Ga0496109_0004974 3300048912 Bacteria 11095
135 Ga0496109_0021358 3300048912 Bacteria 5723
136 Ga0496110_0003900 3300048913 Bacteria 11470
137 Ga0496112_0011889 3300048915 Bacteria 7973
138 Ga0496112_0017596 3300048915 Bacteria 6720
139 Ga0496113_0015166 3300048916 Bacteria 5286
140 Ga0496113_0073046 3300048916 Bacteria 2612
141 Ga0496115_0005231 3300048918 Bacteria 9432
142 Ga0501038_0037033 3300049574 Bacteria 4280
143 Ga0501038_0102325 3300049574 Bacteria 2384
144 Ga0501040_0027273 3300049576 Bacteria 3845
145 Ga0501047_0058319 3300049581 Bacteria 3729
146 Ga0501070_0001578 3300049586 Bacteria 20258
147 Ga0501071_0069534 3300049587 Bacteria 2564
148 Ga0501072_0057620 3300049588 Bacteria 3062
149 Ga0501075_0022026 3300049591 Bacteria 4652
150 Ga0501081_0028402 3300049743 Bacteria 3775
151 Ga0501044_0038621 3300049823 Bacteria 4986
152 nmdc:mga05p37_1922_c1 3300050507 Bacteria 24169
153 nmdc:mga05p37_40153_c1 3300050507 Bacteria 5746
154 nmdc:mga09592_2231_c1 3300050508 Bacteria 15603
155 nmdc:mga0n895_42622_c1 3300050512 Bacteria 4416
156 nmdc:mga0n895_60491_c1 3300050512 Bacteria 3738
157 nmdc:mga08x19_3176_c1 3300050514 Bacteria 9858
158 nmdc:mga0a205_29333_c1 3300050515 Bacteria 5264
159 nmdc:mga0a205_62993_c1 3300050515 Bacteria 3582
160 Ga0495595_0000757 3300053084 Bacteria 12264
161 Ga0495619_0018880 3300053085 Bacteria 4377
162 Ga0500616_0000047 3300053153 Bacteria 322354
163 Ga0501084_0026688 3300054114 Bacteria 4822
164 2919501059 2919497567 Bacteria 4408621
165 Ga0070706_100005426
166 Ga0068869_100025086
167 Ga0068869_100122876
168 Ga0070689_100013007
169 Ga0070674_100066579
170 Ga0070673_100000887
171 Ga0070659_100046270
172 Ga0070701_10002871
173 Ga0070705_100016169
174 Ga0070700_100081056
175 Ga0070708_100017900
176 Ga0070708_100124283
177 Ga0070707_100002192
178 Ga0070698_100000235
179 Ga0070699_100059408
180 Ga0070679_100171285
181 Ga0070684_100072233
182 Ga0070686_100013478
183 Ga0070704_100020976
184 Ga0070704_100077094
185 Ga0068855_100209352
186 Ga0070702_100019969
187 Ga0068859_100092147
188 Ga0068864_100166030
189 Ga0068851_10035710
190 Ga0068870_10016661
191 Ga0068863_100025538
192 Ga0068858_100110148
193 Ga0075428_100008345
194 Ga0075428_100039925
195 Ga0075433_10150309
196 Ga0075434_100018901
197 Ga0075429_100006228
198 Ga0068865_100016318
199 Ga0097620_100092147
200 Ga0075435_100058095
201 Ga0111539_10291332
202 Ga0105245_10027746
203 Ga0105245_10246295
204 Ga0114129_10000343
205 Ga0114129_10005552
206 Ga0114129_10184061
207 Ga0105243_10007706
208 Ga0105249_10065881
209 Ga0105249_10146873
210 Ga0105239_10032251
211 Ga0157380_10093725
212 Ga0157379_10025023
213 Ga0207688_10009595
214 Ga0207654_10091674
215 Ga0207657_10001046
216 Ga0207649_10016443
217 Ga0207652_10028591
218 Ga0207646_10004866
219 Ga0207646_10009016
220 Ga0207706_10010969
221 Ga0207670_10003825
222 Ga0207704_10067636
223 Ga0207689_10066106
224 Ga0207661_10043966
225 Ga0207679_10013706
226 Ga0207678_10080347
227 Ga0207708_10019020
228 Ga0207641_10153599
229 Ga0207675_100022487
230 Ga0207428_10013772
231 Ga0307515_10000033
232 Ga0265338_10074780
233 Ga0265327_10002810
234 Ga0265316_10000140
235 Ga0316576_10019233
236 Ga0316577_10004380
237 Ga0316577_10031946
238 Ga0316583_10005315
239 Ga0316583_10013721
240 Ga0316585_10016780
241 Ga0373941_0004564
242 Ga0373943_0006993
243 Ga0316582_0002111
244 Ga0316582_0066132
245 Ga0316582_0115671
246 Ga0316584_0011950
247 Ga0316584_0024853
248 Ga0373925_0025776
249 Ga0395905_0000387
250 Ga0316581_0000266
251 Ga0395901_0013795
252 Ga0451795_0091293
253 Ga0451577_0003196
254 Ga0453683_0010439
255 Ga0453683_0015930
256 Ga0466963_0029956
257 Ga0453684_0001027
258 Ga0453684_0046584
259 Ga0451576_0003120
260 Ga0451576_0013267
261 Ga0451576_0031070
262 Ga0466967_0022880
263 Ga0466967_0023257
264 Ga0466967_0037363
265 Ga0466967_0040561
266 Ga0466967_0061148
267 Ga0466967_0179456
268 Ga0495629_0002147
269 Ga0495641_0002183
270 Ga0495651_0039134
271 Ga0495582_0001182
272 Ga0495608_0040630
273 Ga0495618_0036047
274 Ga0495618_0055171
275 Ga0495628_0097726
276 Ga0495630_0005687
277 Ga0495652_0020469
278 Ga0495640_0056173
279 Ga0495586_0019309
280 Ga0495634_0035935
281 Ga0495635_0050418
282 Ga0495599_0057630
283 Ga0495613_0020931
284 Ga0495600_0040895
285 Ga0495581_0016243
286 Ga0495674_0038636
287 Ga0495674_0086836
288 Ga0495680_0003627
289 Ga0495680_0027118
290 Ga0495593_0010324
291 Ga0496102_0009400
292 Ga0496104_0002363
293 Ga0496104_0188752
294 Ga0496106_0019826
295 Ga0496106_0099321
296 Ga0496107_0054092
297 Ga0496108_0191926
298 Ga0496109_0004974
299 Ga0496109_0021358
300 Ga0496110_0003900
301 Ga0496112_0011889
302 Ga0496112_0017596
303 Ga0496113_0015166
304 Ga0496113_0073046
305 Ga0496115_0005231
306 Ga0501038_0037033
307 Ga0501038_0102325
308 Ga0501040_0027273
309 Ga0501047_0058319
310 Ga0501070_0001578
311 Ga0501071_0069534
312 Ga0501072_0057620
313 Ga0501075_0022026
314 Ga0501081_0028402
315 Ga0501044_0038621
316 nmdc:mga05p37_1922_c1
317 nmdc:mga05p37_40153_c1
318 nmdc:mga09592_2231_c1
319 nmdc:mga0n895_42622_c1
320 nmdc:mga0n895_60491_c1
321 nmdc:mga08x19_3176_c1
322 nmdc:mga0a205_29333_c1
323 nmdc:mga0a205_62993_c1
324 Ga0495595_0000757
325 Ga0495619_0018880
326 Ga0500616_0000047
327 Ga0501084_0026688
328 2919501059

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01078

Mg_chelatase

Magnesium chelatase, subunit ChlI

273

480

0.98

PF13335

Mg_chelatase_C

Magnesium chelatase, subunit ChlI C-terminal

487

584

0.97

PF13541

ChlI

Subunit ChlI of Mg-chelatase

100

222

0.97

PF07728

AAA_5

AAA domain (dynein-related subfamily)

296

436

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
7ypk-assembly1.cif.gz_B close-ring hexamer of the substrate-bound lon protease with an s678a mutation 0.8301 2 153
6on2-assembly1.cif.gz_D lon protease from yersinia pestis with y2853 substrate 0.8237 2 153
6on2-assembly1.cif.gz_C lon protease from yersinia pestis with y2853 substrate 0.8162 2 153
7ypk-assembly1.cif.gz_C close-ring hexamer of the substrate-bound lon protease with an s678a mutation 0.8082 1 153
7ypk-assembly1.cif.gz_D close-ring hexamer of the substrate-bound lon protease with an s678a mutation 0.8001 1 153
ID Description Score Start End Superfamily
af_P9WPR1_2_172_3.30.230.10 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2; 0.9392 1 157 3.30.230.10
af_P22787_5_170_3.30.230.10 Alpha Beta;2-Layer Sandwich;Ribosomal Protein S5; domain 2; 0.9324 5 155 3.30.230.10
af_P22787_171_500_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9251 166 450 3.40.50.300
af_P9WPR1_187_501_3.40.50.300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;P-loop containing nucleotide triphosphate hydrolases 0.9184 167 451 3.40.50.300
2qbyA01 Mainly Alpha;Orthogonal Bundle;Helicase, Ruva Protein; domain 3; 0.8786 397 448 1.10.8.60
ID Description Score Start End GO Terms
AF-A0A3D4I236-F1-model_v4 Magnesium chelatase 0.9787 209 368 GO:0005524
AF-A0A7V9FVA6-F1-model_v4 ATP-binding protein 0.968 2 135 GO:0005524
AF-A0A3D4I236-F1-model_v4 Magnesium chelatase 0.9669 209 368 GO:0005524
AF-A0A658NQD4-F1-model_v4 ATP-dependent protease 0.9652 260 358 GO:0003677
GO:0005524
GO:0006508
GO:0008233
GO:0032508
AF-A0A831XP99-F1-model_v4 ATP-dependent protease 0.964 1 119 GO:0006508
GO:0008233

Map