F242725

General Info

Members Datasets Scaffolds Average Seq Length
163 126 148 420

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2643221620|2644117651
Length 412
Sequence VVVGLGYVGLPLAQLATRRGVTTVGLDTSTRVTDQLNAGRSHVDDISDDEVATMVAQGFTATTDDAVLADADTVVVCVPTPLSSDGGPDLSMVTSAMTTIGRRLTAGTLVVLESTTYPGTTEELVRPLLEEASGLRAGEDFSLAFSPERVDPGNQTYTVENTPKIVGGTTPSCTKRAAEFYGALVDEVVLAKGTREAEMAKLLENTYRHVNIALVNEMVRFSHELDIDFWDVIGLASTKPFGFQAFWPGPGVGGHCIPIDPNYLSHRVQEKLGYPFRFVELAQEINATMPRYVVQRIQSLLNDEGRAVKGSTILLLGVTYKPNIADQRETPAQPLAEHLLQLGATVQYFDPYVEHWRVEGTTAVPDPVEAARTADLTVLVQVHDAFDVPELVGAAKRFFDLRGATTDGTERL

Samples

Sample ID Description Type Environment
1 2501939600 Micromonospora sp. L5 Isolate Unclassified
2 2515154137 Salinispora arenicola CNX482 Isolate Rhizosphere
3 2515154203 Salinispora arenicola CNR921 Isolate Rhizosphere
4 2622736605 Geodermatophilus ruber DSM 45317 Isolate Rhizosphere
5 2643221617 Nocardioides sp. Root79 Isolate Unclassified
6 2643221619 Agromyces sp. Root81 Isolate Unclassified
7 2643221620 Nocardioides sp. Root240 Isolate Unclassified
8 2643221697 Aeromicrobium sp. Root495 Isolate Unclassified
9 2643221711 Terrabacter sp. Root85 Isolate Unclassified
10 2643221961 Aeromicrobium sp. Root236 Isolate Unclassified
11 2643221962 Aeromicrobium sp. Root344 Isolate Unclassified
12 2818991318 Humibacillus xanthopallidus SLBN-155 Isolate Unclassified
13 2844849076 Arthrobacter cupressi DSM 24664 Isolate Rhizosphere
14 2887443736 Ruania rhizosphaerae LNNU 22110 Isolate Rhizosphere
15 3300003203 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
16 3300003285 Grassland soil microbial communities from Hopland, California, USA - Sample H3_Rhizo_39 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Rhizosphere
17 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
18 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
19 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
20 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
21 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
22 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
23 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
24 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
25 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
26 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
27 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
28 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
29 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
30 3300005981 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 Metagenome Rhizosphere
31 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
32 3300006058 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 Metagenome Rhizosphere
33 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
34 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
35 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
36 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
37 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
38 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
39 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
41 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
42 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
43 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
44 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
45 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
46 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
47 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
48 3300012500 Arabidopsis rhizosphere microbial communities from North Carolina - M.Col.4.old.080610 Metagenome Rhizosphere
49 3300012507 Arabidopsis rhizosphere microbial communities from North Carolina - M.Cvi.7.yng.070610 Metagenome Rhizosphere
50 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
51 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
52 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
53 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
54 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
55 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
56 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
65 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
67 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
69 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
70 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
74 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
75 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
76 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
77 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
78 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
79 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
80 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
81 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
82 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
83 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
84 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
85 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
86 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
87 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
88 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
89 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
90 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
91 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
92 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
93 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
94 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
95 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
96 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
97 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
98 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
99 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
100 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
101 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
102 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
103 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
104 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
105 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
106 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
107 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
108 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
109 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
110 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
111 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
112 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
114 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
115 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
116 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
117 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
118 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
119 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
120 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
121 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
122 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
123 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
124 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
125 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
126 649633069 Micromonospora sp. L5 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 90.18
Metatranscriptomes 0.61
Isolates 9.2

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.45
Nodule 0
Rhizoplane 9.2
Rhizosphere 79.14
Stem 0
Stem Tuber 0
Unclassified 9.2

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25406J46586_10000904 3300003203 Bacteria 13920
2 Ga0007423J48922_100276 3300003285 Bacteria 4360
3 Ga0070683_100026185 3300005329 Bacteria 5248
4 Ga0070668_100140612 3300005347 Bacteria 1945
5 Ga0070700_100023756 3300005441 Bacteria 3590
6 Ga0070684_100311226 3300005535 Bacteria 1446
7 Ga0068857_100000025 3300005577 Bacteria 84312
8 Ga0068856_100102867 3300005614 Bacteria 2850
9 Ga0068852_100000189 3300005616 Bacteria 41648
10 Ga0068864_100121607 3300005618 Bacteria 2335
11 Ga0068861_100062955 3300005719 Bacteria 2851
12 Ga0068861_100113307 3300005719 Bacteria 2176
13 Ga0068851_10000001 3300005834 Bacteria 495512
14 Ga0068863_100014265 3300005841 Bacteria 7653
15 Ga0068860_100279820 3300005843 Bacteria 1630
16 Ga0081455_10006299 3300005937 Bacteria 12756
17 Ga0081455_10008436 3300005937 Bacteria 10717
18 Ga0081538_10042176 3300005981 Bacteria 2883
19 Ga0081539_10000356 3300005985 Bacteria 100748
20 Ga0081539_10010355 3300005985 Bacteria 7589
21 Ga0075432_10000149 3300006058 Bacteria 16678
22 Ga0075428_100021877 3300006844 Bacteria 7081
23 Ga0075428_100032893 3300006844 Bacteria 5726
24 Ga0075431_100001678 3300006847 Bacteria 20754
25 Ga0075431_100009195 3300006847 Bacteria 9911
26 Ga0075431_100116969 3300006847 Bacteria 2751
27 Ga0075433_10001945 3300006852 Bacteria 15530
28 Ga0075433_10003758 3300006852 Bacteria 11749
29 Ga0075434_100000375 3300006871 Bacteria 32558
30 Ga0075429_100015847 3300006880 Bacteria 6526
31 Ga0075435_100003104 3300007076 Bacteria 11222
32 Ga0075435_100007814 3300007076 Bacteria 7649
33 Ga0111539_10000929 3300009094 Bacteria 38351
34 Ga0111539_10029094 3300009094 Bacteria 6736
35 Ga0114129_10022754 3300009147 Bacteria 8887
36 Ga0105243_10004871 3300009148 Bacteria 10536
37 Ga0105243_10049865 3300009148 Bacteria 3305
38 Ga0105242_10016175 3300009176 Bacteria 5795
39 Ga0105248_10052704 3300009177 Bacteria 4566
40 Ga0105237_10000217 3300009545 Bacteria 80966
41 Ga0105238_10001177 3300009551 Bacteria 26305
42 Ga0105238_10051213 3300009551 Bacteria 4153
43 Ga0105249_10027961 3300009553 Bacteria 5090
44 Ga0105239_10023579 3300010375 Bacteria 6777
45 Ga0157314_1001393 3300012500 Bacteria 1742
46 Ga0157342_1002606 3300012507 Bacteria 1481
47 Ga0157371_10001269 3300013102 Bacteria 26599
48 Ga0163162_10052068 3300013306 Bacteria 4110
49 Ga0157375_10146065 3300013308 Bacteria 2496
50 Ga0163163_10001620 3300014325 Bacteria 18936
51 Ga0157380_10243571 3300014326 Bacteria 1623
52 Ga0163161_10066346 3300017792 Bacteria 2635
53 Ga0207656_10000002 3300025321 Bacteria 792178
54 Ga0207671_10000002 3300025914 Bacteria 1144816
55 Ga0207694_10000022 3300025924 Bacteria 288900
56 Ga0207706_10002019 3300025933 Bacteria 19876
57 Ga0207686_10138529 3300025934 Bacteria 1679
58 Ga0207709_10141999 3300025935 Bacteria 1652
59 Ga0207704_10186091 3300025938 Bacteria 1506
60 Ga0207668_10081664 3300025972 Bacteria 2346
61 Ga0207668_10120740 3300025972 Bacteria 1984
62 Ga0207677_10199929 3300026023 Bacteria 1588
63 Ga0207708_10041962 3300026075 Bacteria 3488
64 Ga0207702_10079017 3300026078 Bacteria 2850
65 Ga0207641_10012328 3300026088 Bacteria 7013
66 Ga0207648_10049789 3300026089 Bacteria 3665
67 Ga0207674_10000153 3300026116 Bacteria 80955
68 Ga0207675_100003090 3300026118 Bacteria 16310
69 Ga0207675_100016620 3300026118 Bacteria 6872
70 Ga0207683_10008514 3300026121 Bacteria 8779
71 Ga0207698_10000063 3300026142 Bacteria 72803
72 Ga0207428_10001573 3300027907 Bacteria 23765
73 Ga0207428_10002919 3300027907 Bacteria 16936
74 Ga0265334_10000526 3300028573 Bacteria 19583
75 Ga0307515_10147128 3300028794 Bacteria 2488
76 Ga0265340_10010953 3300031247 Bacteria 4838
77 Ga0307513_10014703 3300031456 Bacteria 9524
78 Ga0316579_10000634 3300031691 Bacteria 11936
79 Ga0316576_10001418 3300031727 Bacteria 12827
80 Ga0307405_10001710 3300031731 Bacteria 9359
81 Ga0307413_10042477 3300031824 Bacteria 2672
82 Ga0307410_10017174 3300031852 Bacteria 4337
83 Ga0307410_10073940 3300031852 Bacteria 2371
84 Ga0307406_10033550 3300031901 Bacteria 3143
85 Ga0307406_10143660 3300031901 Bacteria 1693
86 Ga0307407_10008150 3300031903 Bacteria 4791
87 Ga0307412_10028636 3300031911 Bacteria 3488
88 Ga0307409_100000404 3300031995 Bacteria 18410
89 Ga0307409_100010414 3300031995 Bacteria 5781
90 Ga0307409_100084606 3300031995 Bacteria 2576
91 Ga0307416_100065105 3300032002 Bacteria 2993
92 Ga0307416_100173220 3300032002 Bacteria 2012
93 Ga0307416_100349983 3300032002 Bacteria 1495
94 Ga0307411_10012928 3300032005 Bacteria 4580
95 Ga0307415_100000037 3300032126 Bacteria 57345
96 Ga0307415_100001332 3300032126 Bacteria 11716
97 Ga0307415_100086824 3300032126 Bacteria 2252
98 Ga0316574_0039094 3300035398 Bacteria 2916
99 Ga0316574_0060449 3300035398 Bacteria 2378
100 Ga0395900_0016172 3300037418 Bacteria 7600
101 Ga0395898_0050128 3300037466 Bacteria 4087
102 Ga0395905_0048272 3300037471 Bacteria 3990
103 Ga0395905_0172538 3300037471 Bacteria 2031
104 Ga0395901_0041212 3300038443 Bacteria 4784
105 Ga0395901_0046930 3300038443 Bacteria 4487
106 Ga0395901_0067465 3300038443 Bacteria 3725
107 Ga0400485_08773 3300038735 Bacteria 119523
108 Ga0400486_09802 3300038742 Bacteria 46358
109 Ga0451837_0346486 3300041494 Bacteria 2077
110 Ga0496102_0005529 3300048905 Bacteria 10731
111 Ga0496102_0208382 3300048905 Bacteria 1843
112 Ga0496103_0008488 3300048906 Bacteria 6104
113 Ga0496104_0012872 3300048907 Bacteria 7535
114 Ga0496104_0153123 3300048907 Bacteria 2213
115 Ga0496105_0128378 3300048908 Bacteria 2091
116 Ga0496107_0091443 3300048910 Bacteria 2224
117 Ga0496109_0141888 3300048912 Bacteria 2246
118 Ga0496110_0053576 3300048913 Bacteria 3547
119 Ga0496111_0073305 3300048914 Bacteria 2493
120 Ga0496111_0138845 3300048914 Bacteria 1801
121 Ga0496112_0006193 3300048915 Bacteria 10468
122 Ga0496114_0013979 3300048917 Bacteria 6434
123 Ga0496114_0028839 3300048917 Bacteria 4558
124 Ga0496114_0091710 3300048917 Bacteria 2581
125 Ga0501031_0059997 3300049568 Bacteria 2479
126 Ga0501036_0116502 3300049572 Bacteria 2257
127 Ga0501038_0013123 3300049574 Bacteria 7556
128 Ga0501046_0139734 3300049580 Bacteria 1833
129 Ga0501047_0005865 3300049581 Bacteria 11560
130 Ga0501083_0039197 3300049744 Bacteria 3218
131 nmdc:mga05p37_40940_c1 3300050507 Bacteria 5690
132 nmdc:mga09592_1557_c1 3300050508 Bacteria 18449
133 nmdc:mga09592_15910_c1 3300050508 Bacteria 6145
134 nmdc:mga06r32_45183_c1 3300050510 Bacteria 4198
135 nmdc:mga06r32_89362_c1 3300050510 Bacteria 3008
136 nmdc:mga08y16_10846_c1 3300050511 Bacteria 9568
137 nmdc:mga08y16_295952_c1 3300050511 Bacteria 1669
138 nmdc:mga0n895_60207_c1 3300050512 Bacteria 3747
139 nmdc:mga0rr50_1924_c1 3300050513 Bacteria 11541
140 nmdc:mga08x19_8909_c1 3300050514 Bacteria 5987
141 nmdc:mga0a205_32052_c1 3300050515 Bacteria 5039
142 nmdc:mga0a205_7651_c1 3300050515 Bacteria 9799
143 Ga0500604_0020454 3300053151 Bacteria 1863
144 Ga0500616_0000525 3300053153 Bacteria 48388
145 Ga0500616_0003825 3300053153 Bacteria 11145
146 Ga0500620_000316 3300053155 Bacteria 9115
147 Ga0501082_0002465 3300060353 Bacteria 16241
148 Ga0501082_0107530 3300060353 Bacteria 2413

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300031995 Ga0307409_100084606 Ga0307409_1000846062 387
2 3300013306 Ga0163162_10052068 Ga0163162_100520683 404
3 3300013308 Ga0157375_10146065 Ga0157375_101460652 404
4 iso_pu_bacteria 2622736605 2623499502 409
5 iso_pu_bacteria 2501939600 2501941769 410
6 iso_pu_bacteria 2643221617 2644100045 411
7 iso_pu_bacteria 2643221620 2644117651 411
8 iso_pu_bacteria 2643221961 2645722172 411
9 iso_pu_bacteria 2643221962 2645725060 411
10 3300048917 Ga0496114_0091710 Ga0496114_0091710_1080_2318 412
11 3300035398 Ga0316574_0060449 Ga0316574_0060449_779_2041 413
12 iso_pu_bacteria 2643221619 2644111594 413
13 3300005985 Ga0081539_10010355 Ga0081539_100103555 414
14 3300031456 Ga0307513_10014703 Ga0307513_100147032 414
15 iso_pu_bacteria 2515154137 2515755376 414
16 iso_pu_bacteria 2515154203 2516090011 414
17 iso_pu_bacteria 2844849076 2844849301 414
18 iso_pu_bacteria 2643221697 2644538486 415
19 iso_pu_bacteria 2887443736 2887445875 415
20 iso_pu_bacteria 649633069 649811021 415
21 3300005577 Ga0068857_100000025 Ga0068857_10000002544 417
22 3300005614 Ga0068856_100102867 Ga0068856_1001028672 417
23 3300005616 Ga0068852_100000189 Ga0068852_10000018921 417
24 3300005834 Ga0068851_10000001 Ga0068851_10000001264 417
25 3300009545 Ga0105237_10000217 Ga0105237_1000021738 417
26 3300009551 Ga0105238_10001177 Ga0105238_1000117721 417
27 3300010375 Ga0105239_10023579 Ga0105239_100235793 417
28 3300013102 Ga0157371_10001269 Ga0157371_100012694 417
29 3300025321 Ga0207656_10000002 Ga0207656_10000002664 417
30 3300025914 Ga0207671_10000002 Ga0207671_10000002958 417
31 3300025924 Ga0207694_10000022 Ga0207694_10000022217 417
32 3300026078 Ga0207702_10079017 Ga0207702_100790173 417
33 3300026116 Ga0207674_10000153 Ga0207674_1000015340 417
34 3300026142 Ga0207698_10000063 Ga0207698_1000006347 417
35 3300032126 Ga0307415_100086824 Ga0307415_1000868242 417
36 3300037418 Ga0395900_0016172 Ga0395900_0016172_5222_6475 417
37 3300038443 Ga0395901_0041212 Ga0395901_0041212_2072_3325 417
38 3300048908 Ga0496105_0128378 Ga0496105_0128378_388_1641 417
39 3300048912 Ga0496109_0141888 Ga0496109_0141888_752_2005 417
40 3300048913 Ga0496110_0053576 Ga0496110_0053576_1042_2295 417
41 3300048914 Ga0496111_0073305 Ga0496111_0073305_490_1743 417
42 3300048914 Ga0496111_0138845 Ga0496111_0138845_391_1644 417
43 3300053155 Ga0500620_000316 Ga0500620_000316_4980_6239 417
44 3300005841 Ga0068863_100014265 Ga0068863_1000142653 418
45 3300009177 Ga0105248_10052704 Ga0105248_100527043 418
46 3300014325 Ga0163163_10001620 Ga0163163_100016205 418
47 3300026088 Ga0207641_10012328 Ga0207641_100123284 418
48 3300031691 Ga0316579_10000634 Ga0316579_100006349 418
49 3300048907 Ga0496104_0153123 Ga0496104_0153123_907_2163 418
50 3300048915 Ga0496112_0006193 Ga0496112_0006193_2024_3280 418
51 3300053151 Ga0500604_0020454 Ga0500604_0020454_308_1564 418
52 3300053153 Ga0500616_0003825 Ga0500616_0003825_975_2231 418
53 3300003285 Ga0007423J48922_100276 Ga0007423J48922_1002761 419
54 3300005329 Ga0070683_100026185 Ga0070683_1000261855 419
55 3300005535 Ga0070684_100311226 Ga0070684_1003112261 419
56 3300005618 Ga0068864_100121607 Ga0068864_1001216072 419
57 3300006844 Ga0075428_100032893 Ga0075428_1000328934 419
58 3300006847 Ga0075431_100116969 Ga0075431_1001169693 419
59 3300006880 Ga0075429_100015847 Ga0075429_1000158472 419
60 3300009147 Ga0114129_10022754 Ga0114129_100227543 419
61 3300031731 Ga0307405_10001710 Ga0307405_100017104 419
62 3300031824 Ga0307413_10042477 Ga0307413_100424772 419
63 3300031852 Ga0307410_10073940 Ga0307410_100739402 419
64 3300031901 Ga0307406_10033550 Ga0307406_100335502 419
65 3300031901 Ga0307406_10143660 Ga0307406_101436601 419
66 3300031911 Ga0307412_10028636 Ga0307412_100286362 419
67 3300031995 Ga0307409_100000404 Ga0307409_1000004043 419
68 3300032002 Ga0307416_100173220 Ga0307416_1001732202 419
69 3300032126 Ga0307415_100000037 Ga0307415_10000003746 419
70 3300037471 Ga0395905_0048272 Ga0395905_0048272_1445_2704 419
71 3300038443 Ga0395901_0046930 Ga0395901_0046930_1486_2745 419
72 3300041494 Ga0451837_0346486 Ga0451837_0346486_710_1969 419
73 3300049568 Ga0501031_0059997 Ga0501031_0059997_182_1441 419
74 3300049572 Ga0501036_0116502 Ga0501036_0116502_351_1610 419
75 3300049574 Ga0501038_0013123 Ga0501038_0013123_486_1745 419
76 3300049580 Ga0501046_0139734 Ga0501046_0139734_482_1741 419
77 3300049581 Ga0501047_0005865 Ga0501047_0005865_4290_5549 419
78 3300049744 Ga0501083_0039197 Ga0501083_0039197_1474_2733 419
79 3300050507 nmdc:mga05p37_40940_c1 nmdc:mga05p37_40940_c1_4340_5599 419
80 3300050508 nmdc:mga09592_1557_c1 nmdc:mga09592_1557_c1_12950_14209 419
81 3300060353 Ga0501082_0002465 Ga0501082_0002465_2126_3385 419
82 3300060353 Ga0501082_0107530 Ga0501082_0107530_498_1757 419
83 iso_pu_bacteria 2818991318 2819428352 419
84 3300003203 JGI25406J46586_10000904 JGI25406J46586_100009044 420
85 3300005347 Ga0070668_100140612 Ga0070668_1001406122 420
86 3300005441 Ga0070700_100023756 Ga0070700_1000237561 420
87 3300005719 Ga0068861_100062955 Ga0068861_1000629552 420
88 3300005719 Ga0068861_100113307 Ga0068861_1001133072 420
89 3300005843 Ga0068860_100279820 Ga0068860_1002798201 420
90 3300005937 Ga0081455_10006299 Ga0081455_100062993 420
91 3300005937 Ga0081455_10008436 Ga0081455_100084365 420
92 3300005981 Ga0081538_10042176 Ga0081538_100421762 420
93 3300005985 Ga0081539_10000356 Ga0081539_1000035615 420
94 3300006058 Ga0075432_10000149 Ga0075432_1000014911 420
95 3300006844 Ga0075428_100021877 Ga0075428_1000218775 420
96 3300006847 Ga0075431_100001678 Ga0075431_1000016787 420
97 3300006847 Ga0075431_100009195 Ga0075431_1000091958 420
98 3300006852 Ga0075433_10001945 Ga0075433_100019459 420
99 3300006852 Ga0075433_10003758 Ga0075433_1000375817 420
100 3300006871 Ga0075434_100000375 Ga0075434_10000037513 420
101 3300007076 Ga0075435_100003104 Ga0075435_1000031045 420
102 3300007076 Ga0075435_100007814 Ga0075435_1000078143 420
103 3300009094 Ga0111539_10000929 Ga0111539_1000092917 420
104 3300009094 Ga0111539_10029094 Ga0111539_100290945 420
105 3300009148 Ga0105243_10004871 Ga0105243_100048713 420
106 3300009148 Ga0105243_10049865 Ga0105243_100498653 420
107 3300009176 Ga0105242_10016175 Ga0105242_100161751 420
108 3300009551 Ga0105238_10051213 Ga0105238_100512135 420
109 3300009553 Ga0105249_10027961 Ga0105249_100279612 420
110 3300012500 Ga0157314_1001393 Ga0157314_10013932 420
111 3300012507 Ga0157342_1002606 Ga0157342_10026061 420
112 3300014326 Ga0157380_10243571 Ga0157380_102435712 420
113 3300017792 Ga0163161_10066346 Ga0163161_100663462 420
114 3300025933 Ga0207706_10002019 Ga0207706_100020198 420
115 3300025934 Ga0207686_10138529 Ga0207686_101385291 420
116 3300025935 Ga0207709_10141999 Ga0207709_101419991 420
117 3300025938 Ga0207704_10186091 Ga0207704_101860911 420
118 3300025972 Ga0207668_10081664 Ga0207668_100816642 420
119 3300025972 Ga0207668_10120740 Ga0207668_101207402 420
120 3300026023 Ga0207677_10199929 Ga0207677_101999292 420
121 3300026075 Ga0207708_10041962 Ga0207708_100419621 420
122 3300026089 Ga0207648_10049789 Ga0207648_100497891 420
123 3300026118 Ga0207675_100003090 Ga0207675_1000030905 420
124 3300026118 Ga0207675_100016620 Ga0207675_1000166202 420
125 3300026121 Ga0207683_10008514 Ga0207683_100085146 420
126 3300027907 Ga0207428_10001573 Ga0207428_100015739 420
127 3300027907 Ga0207428_10002919 Ga0207428_1000291924 420
128 3300028573 Ga0265334_10000526 Ga0265334_100005264 420
129 3300028794 Ga0307515_10147128 Ga0307515_101471282 420
130 3300031247 Ga0265340_10010953 Ga0265340_100109533 420
131 3300031727 Ga0316576_10001418 Ga0316576_100014183 420
132 3300031852 Ga0307410_10017174 Ga0307410_100171742 420
133 3300031903 Ga0307407_10008150 Ga0307407_100081503 420
134 3300031995 Ga0307409_100010414 Ga0307409_1000104144 420
135 3300032002 Ga0307416_100065105 Ga0307416_1000651053 420
136 3300032002 Ga0307416_100349983 Ga0307416_1003499832 420
137 3300032005 Ga0307411_10012928 Ga0307411_100129282 420
138 3300032126 Ga0307415_100001332 Ga0307415_1000013324 420
139 3300035398 Ga0316574_0039094 Ga0316574_0039094_181_1443 420
140 3300037466 Ga0395898_0050128 Ga0395898_0050128_671_1948 420
141 3300037471 Ga0395905_0172538 Ga0395905_0172538_197_1474 420
142 3300038443 Ga0395901_0067465 Ga0395901_0067465_706_1983 420
143 3300038735 Ga0400485_08773 Ga0400485_08773_45553_46827 420
144 3300038742 Ga0400486_09802 Ga0400486_09802_40853_42127 420
145 3300048905 Ga0496102_0005529 Ga0496102_0005529_1977_3263 420
146 3300048905 Ga0496102_0208382 Ga0496102_0208382_132_1418 420
147 3300048906 Ga0496103_0008488 Ga0496103_0008488_2917_4203 420
148 3300048907 Ga0496104_0012872 Ga0496104_0012872_2015_3301 420
149 3300048910 Ga0496107_0091443 Ga0496107_0091443_577_1863 420
150 3300048917 Ga0496114_0013979 Ga0496114_0013979_441_1727 420
151 3300048917 Ga0496114_0028839 Ga0496114_0028839_235_1521 420
152 3300050508 nmdc:mga09592_15910_c1 nmdc:mga09592_15910_c1_4815_6083 420
153 3300050510 nmdc:mga06r32_45183_c1 nmdc:mga06r32_45183_c1_2067_3329 420
154 3300050510 nmdc:mga06r32_89362_c1 nmdc:mga06r32_89362_c1_1185_2453 420
155 3300050511 nmdc:mga08y16_10846_c1 nmdc:mga08y16_10846_c1_1609_2877 420
156 3300050511 nmdc:mga08y16_295952_c1 nmdc:mga08y16_295952_c1_189_1457 420
157 3300050512 nmdc:mga0n895_60207_c1 nmdc:mga0n895_60207_c1_857_2125 420
158 3300050513 nmdc:mga0rr50_1924_c1 nmdc:mga0rr50_1924_c1_7249_8517 420
159 3300050514 nmdc:mga08x19_8909_c1 nmdc:mga08x19_8909_c1_3505_4773 420
160 3300050515 nmdc:mga0a205_32052_c1 nmdc:mga0a205_32052_c1_1263_2531 420
161 3300050515 nmdc:mga0a205_7651_c1 nmdc:mga0a205_7651_c1_6481_7749 420
162 3300053153 Ga0500616_0000525 Ga0500616_0000525_20481_21839 420
163 iso_pu_bacteria 2643221711 2644611799 420

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00984

UDPG_MGDP_dh

UDP-glucose/GDP-mannose dehydrogenase family, central domain

195

288

0.96

PF03721

UDPG_MGDP_dh_N

UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain

1

180

0.95

PF03720

UDPG_MGDP_dh_C

UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain

314

407

0.91

PF03446

NAD_binding_2

NAD binding domain of 6-phosphogluconate dehydrogenase

1

135

0.86

Structural Annotation

Top 5 Hits

ID Description Score Start End
2vvm-assembly1.cif.gz_B the structure of mao-n-d5, a variant of monoamine oxidase from aspergillus niger. 0.9867 3 33
7exs-assembly1.cif.gz_A thermomicrobium roseum sarcosine oxidase mutant - s320r 0.985 4 33
3zdn-assembly2.cif.gz_D d11-c mutant of monoamine oxidase from aspergillus niger 0.9831 4 33
3zdn-assembly1.cif.gz_A d11-c mutant of monoamine oxidase from aspergillus niger 0.983 4 33
3zdn-assembly1.cif.gz_B d11-c mutant of monoamine oxidase from aspergillus niger 0.9812 3 33
ID Description Score Start End Superfamily
af_Q8VYV2_23_370_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9861 6 32 3.50.50.60
af_Q54US8_49_419_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9858 4 33 3.50.50.60
af_B0G160_35_582_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9831 4 31 3.50.50.60
2e5vA01 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9774 5 34 3.50.50.60
af_F6P928_26_379_3.50.50.60 Alpha Beta;3-Layer(bba) Sandwich;FAD/NAD(P)-binding domain;FAD/NAD(P)-binding domain 0.9739 4 35 3.50.50.60
ID Description Score Start End GO Terms
AF-A0A7Y2GYV0-F1-model_v4 UDP-N-acetyl-D-glucosamine dehydrogenase 0.9842 298 410 GO:0000271
GO:0016616
GO:0016628
GO:0051287
AF-X0W373-F1-model_v4 UDP-glucose/GDP-mannose dehydrogenase N-terminal domain-containing protein 0.9829 3 135 GO:0000271
GO:0016616
GO:0016628
GO:0051287
AF-X0T101-F1-model_v4 UDP-glucose/GDP-mannose dehydrogenase N-terminal domain-containing protein 0.9782 3 192 GO:0000271
GO:0016616
GO:0016628
GO:0051287
AF-A0A7W1MZ17-F1-model_v4 UDP-glucose/GDP-mannose dehydrogenase N-terminal domain-containing protein 0.9768 4 181 GO:0000271
GO:0016616
GO:0016628
GO:0051287
AF-A0A2H0LKS3-F1-model_v4 UDP-N-acetyl-D-glucosamine dehydrogenase 0.9764 3 175 GO:0000271
GO:0016616
GO:0016628
GO:0051287

Feature Viewer

pLDDT pTM Quality
86.33 0.76 High
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Predicted Structure (AlphaFold2)

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