F242643

General Info

Members Datasets Scaffolds Average Seq Length
163 131 326 282

Family's Representative Sequence

Representative Sequence 3300050515|nmdc:mga0a205_154494_c1|nmdc:mga0a205_154494_c1_976_1881
Length 301
Sequence MSPVYGNADRMMAGTNMRIAVTGGSGKLGRAVVAELLGHDHAVANLDLVPSSEQRATFTRVDFTDFGQTVQALTAIDDRYDHLDGVVHLAAIPGPGMRPNSTIFANNVVSTYNVFEAARRAGIGNIVWASSETVLGLPFDVPPPYIPVDEDIPVRPATAYSLGKVLDEEMARHFCRWDPGLKMIGLRFSNVMEPADYAAFPSFDADPMLRKWNLWSYIDARDGAQAVRLAVEHESTGLDVFIIASPDTVMRRPNAELIDAVFPDVPLKRQVGANETLLSIDKARRVLGYEPRYTWRDPARS

Samples

Sample ID Description Type Environment
1 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300003578 Arabidopsis root microbial communities from the University of North Carolina, USA - metaT NBMF1_36_input_d2 (Metagenome Metatranscriptome, Counting Only) Metatranscriptome Unclassified
4 3300005288 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 2: eDNA_1 v2 (version 2) Metagenome Rhizosphere
5 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
6 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
7 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
8 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
9 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
10 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
11 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
12 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
13 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
14 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
15 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
16 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
17 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
18 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
19 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
20 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
21 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
22 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
23 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
24 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300027876 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M3 S PM (SPAdes) (version 2) Metagenome Rhizosphere
37 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
39 3300030522 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 14_EM Metagenome Unclassified
40 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
41 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
42 3300033179 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 7_EM Metagenome Unclassified
43 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
44 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
45 3300041406 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503DE14Z070717_5284 Metagenome Rhizosphere
46 3300041460 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_12 MetaG Metagenome Rhizoplane
47 3300041999 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0821WE14Z070717_5297 Metagenome Rhizosphere
48 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
49 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
50 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
51 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
52 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
53 3300042184 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0627D_E14_080116_2630 Metagenome Rhizosphere
54 3300042185 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0515W_E14_080116_2592 Metagenome Rhizosphere
55 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
56 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
57 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
58 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
59 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
60 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
61 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
62 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
63 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
64 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
65 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
66 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
67 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
68 3300046515 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co2_62_25 rhizosphere Metagenome Rhizosphere
69 3300046528 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co1_24_3 rhizosphere Metagenome Rhizosphere
70 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
71 3300047323 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWA-24-3-Co3_23_35 rhizosphere Metagenome Rhizosphere
72 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
73 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
74 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
75 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
76 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
77 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
78 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
79 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
80 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
81 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
82 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
83 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
84 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
85 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
86 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
87 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
88 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
89 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
90 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
91 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
92 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
93 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
94 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
96 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
97 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
98 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
100 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
101 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
102 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
103 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
104 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
105 3300053140 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 endosphere Metagenome Endosphere
106 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
107 3300053155 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL3_83_27 endosphere Metagenome Endosphere
108 2508501114 Microvirga lotononidis WSM3557 Isolate Nodule
109 2643221566 Microbacterium sp. Root166 Isolate Unclassified
110 2643221572 Leifsonia sp. Root60 Isolate Unclassified
111 2643221575 Microbacterium sp. Root61 Isolate Unclassified
112 2643221632 Leifsonia sp. Root112D2 Isolate Unclassified
113 2643221649 Leifsonia sp. Root4 Isolate Unclassified
114 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
115 2721755702 Agromyces sp. AR33 Isolate Rhizosphere
116 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
117 2773857759 Microbacterium sp. 1294 Isolate Unclassified
118 2808606368 Microbacterium sp. SLBN-1 Isolate Unclassified
119 2808606372 Agromyces sp. 23-23 Isolate Unclassified
120 2821268502 Microbacterium sp. YT0620BN Isolate Unclassified
121 2833709550 Microbacterium sp. 3290 Isolate Rhizosphere
122 2857729791 Plantibacter sp. R-72288 Isolate Unclassified
123 2870628048 Microbacterium thalassium DSM 12511 Isolate Rhizosphere
124 2895660088 Leifsonia flava SYP-B2174 Isolate Rhizosphere
125 2919443155 Agromyces sp. 3263 Isolate Rhizosphere
126 2928090899 Microbacterium sp. 1262 Isolate Rhizosphere
127 2935409751 Agromyces sp. PvR057 Isolate Rhizosphere
128 2966924647 Frigoribacterium sp. 2355 Isolate Rhizosphere
129 2977251589 Microbacterium sp. SORGH_AS 505 Isolate Unclassified
130 2984580707 Microbacterium paludicola SORGH_AS919 Isolate Aerial Root
131 8046352972 Agromyces mangrovi NBRC 112812 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 84.05
Metatranscriptomes 1.23
Isolates 14.72

Biome Distribution

Category Percentage (%)
Aerial Root 0.61
Bulb 0
Endosphere 4.29
Nodule 0.61
Rhizoplane 6.75
Rhizosphere 65.64
Stem 0
Stem Tuber 0
Unclassified 0.61

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 nmdc:mga0a205_154494_c1 3300050515 Bacteria 2193
2 SwRhRL2b_contig_664528 2162886007 Bacteria 924
3 Ga0006562J51391_1160591 3300003578 Bacteria 3467
4 Ga0006562J51391_1160592 3300003578 Bacteria 3360
5 Ga0065714_10113193 3300005288 Bacteria 1430
6 Ga0070669_100274604 3300005353 Bacteria 1349
7 Ga0070671_100409927 3300005355 Bacteria 1160
8 Ga0070708_100016670 3300005445 Bacteria 6104
9 Ga0070678_100161280 3300005456 Bacteria 1817
10 Ga0070678_100588213 3300005456 Bacteria 992
11 Ga0070706_100059489 3300005467 Bacteria 3526
12 Ga0070704_100023004 3300005549 Bacteria 4062
13 Ga0068864_100229599 3300005618 Bacteria 1716
14 Ga0068858_100000023 3300005842 Bacteria 167824
15 Ga0068858_100048671 3300005842 Bacteria 3926
16 Ga0081455_10000399 3300005937 Bacteria 57228
17 Ga0081455_10007092 3300005937 Bacteria 11880
18 Ga0075365_10079082 3300006038 Bacteria 2225
19 Ga0075367_10049786 3300006178 Bacteria 2471
20 Ga0075435_100357667 3300007076 Bacteria 1252
21 Ga0105240_10061532 3300009093 Bacteria 4678
22 Ga0105245_10188923 3300009098 Bacteria 1972
23 Ga0105248_10027147 3300009177 Bacteria 6370
24 Ga0105249_10987366 3300009553 Bacteria 911
25 Ga0157370_10154513 3300013104 Bacteria 2135
26 Ga0157380_10016914 3300014326 Bacteria 5386
27 Ga0157377_10200182 3300014745 Bacteria 1267
28 Ga0207643_10024376 3300025908 Bacteria 3338
29 Ga0207681_10387692 3300025923 Bacteria 1126
30 Ga0207687_10017640 3300025927 Bacteria 4703
31 Ga0207644_10337618 3300025931 Bacteria 1221
32 Ga0207690_10311033 3300025932 Bacteria 1236
33 Ga0207711_10015128 3300025941 Bacteria 6407
34 Ga0207689_10172432 3300025942 Bacteria 1783
35 Ga0207668_10041878 3300025972 Bacteria 3098
36 Ga0207668_10089160 3300025972 Bacteria 2261
37 Ga0207703_10000137 3300026035 Bacteria 89265
38 Ga0207703_10356187 3300026035 Bacteria 1348
39 Ga0207676_10228801 3300026095 Bacteria 1661
40 Ga0207675_100254073 3300026118 Bacteria 1702
41 Ga0207683_10230696 3300026121 Bacteria 1688
42 Ga0209974_10050577 3300027876 Bacteria 1396
43 Ga0268266_10479992 3300028379 Bacteria 1185
44 Ga0265338_10148201 3300028800 Bacteria 1827
45 Ga0307512_10005997 3300030522 Bacteria 12461
46 Ga0307406_10000350 3300031901 Bacteria 26873
47 Ga0307406_10496528 3300031901 Bacteria 989
48 Ga0307409_100102663 3300031995 Bacteria 2376
49 Ga0307409_100325281 3300031995 Bacteria 1441
50 Ga0307507_10000073 3300033179 Bacteria 157894
51 Ga0373933_0233465 3300035724 Bacteria 1182
52 Ga0395901_0511703 3300038443 Bacteria 1221
53 Ga0439439_0000353 3300041406 Bacteria 7467
54 Ga0451802_2165958 3300041460 Bacteria 930
55 Ga0439433_0000303 3300041999 Bacteria 8492
56 Ga0439442_014025 3300042002 Bacteria 1648
57 Ga0439449_0010867 3300042007 Bacteria 3435
58 Ga0439452_002258 3300042010 Bacteria 7221
59 Ga0439457_003040 3300042014 Bacteria 4655
60 Ga0439446_0022634 3300042156 Bacteria 1783
61 Ga0450908_002843 3300042184 Bacteria 3366
62 Ga0450908_021830 3300042184 Bacteria 1123
63 Ga0450909_000813 3300042185 Bacteria 4232
64 Ga0439434_0015562 3300042435 Bacteria 2268
65 Ga0450918_011394 3300042531 Bacteria 1550
66 Ga0466969_0002534 3300044656 Bacteria 9761
67 Ga0466972_0000780 3300044658 Bacteria 15088
68 Ga0466972_0181221 3300044658 Bacteria 988
69 Ga0466966_0006946 3300044684 Bacteria 7497
70 Ga0466966_0046667 3300044684 Bacteria 2765
71 Ga0466966_0116566 3300044684 Bacteria 1644
72 Ga0466961_0003560 3300044693 Bacteria 9714
73 Ga0466961_0028494 3300044693 Bacteria 3591
74 Ga0466961_0146678 3300044693 Bacteria 1475
75 Ga0466971_0020662 3300044719 Bacteria 2927
76 Ga0466968_0003321 3300044735 Bacteria 5939
77 Ga0466970_0102469 3300044765 Bacteria 1559
78 Ga0466960_0026005 3300044901 Bacteria 2654
79 Ga0466959_0021909 3300045049 Bacteria 4719
80 Ga0466967_0420486 3300045976 Bacteria 1303
81 Ga0495638_0209065 3300046460 Bacteria 1097
82 Ga0495620_0083552 3300046515 Bacteria 1289
83 Ga0495642_0050355 3300046528 Unclassified 1713
84 Ga0495645_0034249 3300046543 Bacteria 3706
85 Ga0495683_0144183 3300047323 Bacteria 1114
86 Ga0495686_0076405 3300047472 Bacteria 2052
87 Ga0495615_0057002 3300048090 Bacteria 1021
88 Ga0496102_0111984 3300048905 Bacteria 2545
89 Ga0496104_0105295 3300048907 Bacteria 2703
90 Ga0496105_0091394 3300048908 Bacteria 2513
91 Ga0496105_0143197 3300048908 Bacteria 1967
92 Ga0496109_0013101 3300048912 Bacteria 7174
93 Ga0496110_0713452 3300048913 Bacteria 905
94 Ga0496113_0498811 3300048916 Bacteria 977
95 Ga0496114_0104929 3300048917 Bacteria 2417
96 Ga0496114_0149574 3300048917 Bacteria 2025
97 Ga0496114_0332886 3300048917 Bacteria 1342
98 Ga0496116_0027458 3300048919 Bacteria 4144
99 Ga0496118_0007626 3300048921 Bacteria 11400
100 Ga0496119_0006500 3300048922 Bacteria 10794
101 Ga0496119_0013492 3300048922 Bacteria 6502
102 Ga0496120_0000948 3300048923 Bacteria 39668
103 Ga0496120_0005158 3300048923 Bacteria 10549
104 Ga0496121_0144177 3300048924 Bacteria 1762
105 Ga0496122_0000022 3300048925 Bacteria 388704
106 Ga0496122_0000360 3300048925 Bacteria 97913
107 Ga0496122_0114085 3300048925 Bacteria 1763
108 Ga0496123_0000016 3300048926 Bacteria 424330
109 Ga0496124_0046832 3300048927 Bacteria 3701
110 Ga0496125_0000263 3300048928 Bacteria 108232
111 Ga0496125_0017027 3300048928 Bacteria 6947
112 Ga0496125_0050580 3300048928 Bacteria 3439
113 Ga0496126_0032605 3300048929 Bacteria 4906
114 Ga0496126_0283301 3300048929 Bacteria 1372
115 Ga0496126_0345306 3300048929 Bacteria 1218
116 Ga0496126_0663580 3300048929 Bacteria 814
117 Ga0501033_0059813 3300049570 Bacteria 2813
118 Ga0501034_0002863 3300049571 Bacteria 20080
119 Ga0501034_0017098 3300049571 Bacteria 7439
120 Ga0501034_0121777 3300049571 Bacteria 2595
121 Ga0501034_0316497 3300049571 Bacteria 1494
122 Ga0501037_0052337 3300049573 Bacteria 2986
123 Ga0501037_0081226 3300049573 Bacteria 2351
124 Ga0501038_0011139 3300049574 Bacteria 8212
125 Ga0501046_0037652 3300049580 Bacteria 3886
126 Ga0501047_0099925 3300049581 Bacteria 2780
127 Ga0501048_0322201 3300049582 Bacteria 1101
128 Ga0501035_0160611 3300049822 Bacteria 1945
129 Ga0501044_0001275 3300049823 Bacteria 29765
130 Ga0501044_0015103 3300049823 Bacteria 8321
131 Ga0501044_0017985 3300049823 Bacteria 7579
132 nmdc:mga00v17_467968_c1 3300050491 Bacteria 818
133 nmdc:mga06z11_259709_c1 3300050494 Bacteria 1025
134 nmdc:mga05p37_66103_c1 3300050507 Bacteria 4448
135 nmdc:mga0rr50_323324_c1 3300050513 Bacteria 1293
136 Ga0495612_0001487 3300053078 Bacteria 9655
137 Ga0500573_0114330 3300053140 Bacteria 1507
138 Ga0500616_0001354 3300053153 Bacteria 23877
139 Ga0500620_001129 3300053155 Bacteria 4737
140 2509074111 2508501114 Bacteria 7082538
141 2643846742 2643221566 Bacteria 3460379
142 2643876614 2643221572 Bacteria 3614809
143 2643886772 2643221575 Bacteria 4022601
144 2644181226 2643221632 Bacteria 3406696
145 2644278487 2643221649 Bacteria 3867359
146 2644383669 2643221669 Bacteria 3611286
147 2723643340 2721755702 Bacteria 4373124
148 2747955164 2747842429 Bacteria 3914386
149 2774382675 2773857759 Bacteria 2963774
150 2808883797 2808606368 Bacteria 3174172
151 2808900822 2808606372 Bacteria 4649509
152 2821271224 2821268502 Bacteria 3750023
153 2833712233 2833709550 Bacteria 4008291
154 2857732029 2857729791 Bacteria 4040535
155 2870631484 2870628048 Bacteria 3696012
156 2895660828 2895660088 Bacteria 3782833
157 2919445363 2919443155 Bacteria 4072969
158 2928093740 2928090899 Bacteria 3158267
159 2935411914 2935409751 Bacteria 4179611
160 2966925599 2966924647 Bacteria 3268643
161 2977252852 2977251589 Bacteria 2952848
162 2984582568 2984580707 Bacteria 3351387
163 8046353960 8046352972 Bacteria 3613806
164 nmdc:mga0a205_154494_c1
165 SwRhRL2b_contig_664528
166 Ga0006562J51391_1160591
167 Ga0006562J51391_1160592
168 Ga0065714_10113193
169 Ga0070669_100274604
170 Ga0070671_100409927
171 Ga0070708_100016670
172 Ga0070678_100161280
173 Ga0070678_100588213
174 Ga0070706_100059489
175 Ga0070704_100023004
176 Ga0068864_100229599
177 Ga0068858_100000023
178 Ga0068858_100048671
179 Ga0081455_10000399
180 Ga0081455_10007092
181 Ga0075365_10079082
182 Ga0075367_10049786
183 Ga0075435_100357667
184 Ga0105240_10061532
185 Ga0105245_10188923
186 Ga0105248_10027147
187 Ga0105249_10987366
188 Ga0157370_10154513
189 Ga0157380_10016914
190 Ga0157377_10200182
191 Ga0207643_10024376
192 Ga0207681_10387692
193 Ga0207687_10017640
194 Ga0207644_10337618
195 Ga0207690_10311033
196 Ga0207711_10015128
197 Ga0207689_10172432
198 Ga0207668_10041878
199 Ga0207668_10089160
200 Ga0207703_10000137
201 Ga0207703_10356187
202 Ga0207676_10228801
203 Ga0207675_100254073
204 Ga0207683_10230696
205 Ga0209974_10050577
206 Ga0268266_10479992
207 Ga0265338_10148201
208 Ga0307512_10005997
209 Ga0307406_10000350
210 Ga0307406_10496528
211 Ga0307409_100102663
212 Ga0307409_100325281
213 Ga0307507_10000073
214 Ga0373933_0233465
215 Ga0395901_0511703
216 Ga0439439_0000353
217 Ga0451802_2165958
218 Ga0439433_0000303
219 Ga0439442_014025
220 Ga0439449_0010867
221 Ga0439452_002258
222 Ga0439457_003040
223 Ga0439446_0022634
224 Ga0450908_002843
225 Ga0450908_021830
226 Ga0450909_000813
227 Ga0439434_0015562
228 Ga0450918_011394
229 Ga0466969_0002534
230 Ga0466972_0000780
231 Ga0466972_0181221
232 Ga0466966_0006946
233 Ga0466966_0046667
234 Ga0466966_0116566
235 Ga0466961_0003560
236 Ga0466961_0028494
237 Ga0466961_0146678
238 Ga0466971_0020662
239 Ga0466968_0003321
240 Ga0466970_0102469
241 Ga0466960_0026005
242 Ga0466959_0021909
243 Ga0466967_0420486
244 Ga0495638_0209065
245 Ga0495620_0083552
246 Ga0495642_0050355
247 Ga0495645_0034249
248 Ga0495683_0144183
249 Ga0495686_0076405
250 Ga0495615_0057002
251 Ga0496102_0111984
252 Ga0496104_0105295
253 Ga0496105_0091394
254 Ga0496105_0143197
255 Ga0496109_0013101
256 Ga0496110_0713452
257 Ga0496113_0498811
258 Ga0496114_0104929
259 Ga0496114_0149574
260 Ga0496114_0332886
261 Ga0496116_0027458
262 Ga0496118_0007626
263 Ga0496119_0006500
264 Ga0496119_0013492
265 Ga0496120_0000948
266 Ga0496120_0005158
267 Ga0496121_0144177
268 Ga0496122_0000022
269 Ga0496122_0000360
270 Ga0496122_0114085
271 Ga0496123_0000016
272 Ga0496124_0046832
273 Ga0496125_0000263
274 Ga0496125_0017027
275 Ga0496125_0050580
276 Ga0496126_0032605
277 Ga0496126_0283301
278 Ga0496126_0345306
279 Ga0496126_0663580
280 Ga0501033_0059813
281 Ga0501034_0002863
282 Ga0501034_0017098
283 Ga0501034_0121777
284 Ga0501034_0316497
285 Ga0501037_0052337
286 Ga0501037_0081226
287 Ga0501038_0011139
288 Ga0501046_0037652
289 Ga0501047_0099925
290 Ga0501048_0322201
291 Ga0501035_0160611
292 Ga0501044_0001275
293 Ga0501044_0015103
294 Ga0501044_0017985
295 nmdc:mga00v17_467968_c1
296 nmdc:mga06z11_259709_c1
297 nmdc:mga05p37_66103_c1
298 nmdc:mga0rr50_323324_c1
299 Ga0495612_0001487
300 Ga0500573_0114330
301 Ga0500616_0001354
302 Ga0500620_001129
303 2509074111
304 2643846742
305 2643876614
306 2643886772
307 2644181226
308 2644278487
309 2644383669
310 2723643340
311 2747955164
312 2774382675
313 2808883797
314 2808900822
315 2821271224
316 2833712233
317 2857732029
318 2870631484
319 2895660828
320 2919445363
321 2928093740
322 2935411914
323 2966925599
324 2977252852
325 2984582568
326 8046353960

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01073

3Beta_HSD

3-beta hydroxysteroid dehydrogenase/isomerase family

20

173

0.86

PF01370

Epimerase

NAD dependent epimerase/dehydratase family

19

244

0.8

PF16363

GDP_Man_Dehyd

GDP-mannose 4,6 dehydratase

20

214

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
6jkg-assembly1.cif.gz_B the nad+-free form of human nsdhl 0.8575 2 173
6mfh-assembly1.cif.gz_A mutated uronate dehydrogenase 0.8539 2 285
3ay3-assembly2.cif.gz_D crystal structure of glucuronic acid dehydrogeanse from chromohalobacter salexigens 0.8401 2 285
3rft-assembly1.cif.gz_A crystal structure of uronate dehydrogenase from agrobacterium tumefaciens 0.8022 1 285
3rfx-assembly1.cif.gz_A crystal structure of uronate dehydrogenase from agrobacterium tumefaciens, y136a mutant complexed with nad 0.801 1 285
ID Description Score Start End Superfamily
4id9A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8937 4 279 3.40.50.720
4id9A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8857 4 279 3.40.50.720
2c20A01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8711 2 229 3.40.50.720
4zrnB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8708 3 229 3.40.50.720
3eheB01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain 0.8703 4 229 3.40.50.720
ID Description Score Start End GO Terms
AF-A0A653Z6I8-F1-model_v4 UDP-glucose 4-epimerase 0.9886 134 282
AF-A0A0U4X0C6-F1-model_v4 NAD-dependent epimerase/dehydratase 0.9838 73 266
AF-A0A2S6ITM7-F1-model_v4 Nucleoside-diphosphate-sugar epimerase 0.9817 2 283
AF-A0A2E6SIA6-F1-model_v4 UDP-glucose 4-epimerase 0.9789 1 286 GO:0006012
GO:0016853
AF-A0A3C2BW92-F1-model_v4 UDP-glucose 4-epimerase 0.9789 176 286

Map