F241798

General Info

Members Datasets Scaffolds Average Seq Length
163 100 163 217

Family's Representative Sequence

Representative Sequence 3300025929|Ga0207664_10026139|Ga0207664_100261393
Length 234
Sequence MHLFCINQLRQEHLDQTSHIRILSADDHDLVRKGIAAILANEPDLQLVAEASTGADAIRLHRQHLPDVTLMDLRLPDRSGIEATREIRNETPNAKIIALTSYDGDQDIYRALEAGVRGYLLKEMVYAEVVRAIRAVHSGKRFIPVEVSQQLNGFFPEVALTPREVEVLSLVARGFGNKEIGDVLGTAAGTVKMQLQSILSKLGAKDRTHAVTIALRRGIIHLHSPDAGASILNG

Samples

Sample ID Description Type Environment
1 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
4 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
5 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
6 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
7 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
8 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
9 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
10 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
11 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
12 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
13 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
16 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
17 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
18 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
19 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
20 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
21 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
22 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
23 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
24 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
25 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
26 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
27 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
28 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
29 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
30 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
31 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
32 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
33 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
34 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
35 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
36 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
37 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
38 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
39 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
40 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
41 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
42 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
43 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
63 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
64 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
65 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
66 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
67 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
68 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
69 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
70 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
71 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
72 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
73 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
74 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
75 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
76 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
77 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
78 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
79 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
80 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
81 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
82 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
83 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
84 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
85 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
86 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
87 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
89 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
90 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
91 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
92 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
93 3300049582 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_03 Metagenome Rhizosphere
94 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
95 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
96 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
97 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
98 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
99 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
100 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 1.23
Rhizosphere 69.94
Stem 0
Stem Tuber 0
Unclassified 28.83

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootL2_10385613 3300003322 Unclassified 1330
2 Ga0070683_100491270 3300005329 Unclassified 1172
3 Ga0070682_100027778 3300005337 Bacteria 3398
4 Ga0070660_100446756 3300005339 Unclassified 1072
5 Ga0070661_100011530 3300005344 Bacteria 6158
6 Ga0070674_100225474 3300005356 Bacteria 1460
7 Ga0070659_100077567 3300005366 Bacteria 2650
8 Ga0070659_100247045 3300005366 Unclassified 1478
9 Ga0070714_100015896 3300005435 Bacteria 6066
10 Ga0070714_100078567 3300005435 Bacteria 2868
11 Ga0070713_100509473 3300005436 Unclassified 1136
12 Ga0070663_100280229 3300005455 Bacteria 1328
13 Ga0070681_10578363 3300005458 Unclassified 1037
14 Ga0068853_100012088 3300005539 Bacteria 7024
15 Ga0070665_100009969 3300005548 Bacteria 9609
16 Ga0070665_100067157 3300005548 Bacteria 3596
17 Ga0068855_100009384 3300005563 Bacteria 11818
18 Ga0070664_100062647 3300005564 Bacteria 3171
19 Ga0068857_101261626 3300005577 Unclassified 716
20 Ga0068854_100903312 3300005578 Unclassified 776
21 Ga0068856_100004531 3300005614 Bacteria 13817
22 Ga0068856_100085569 3300005614 Unclassified 3132
23 Ga0068852_100225168 3300005616 Bacteria 1785
24 Ga0081455_10067838 3300005937 Bacteria 2971
25 Ga0070717_10004527 3300006028 Bacteria 10046
26 Ga0070712_100094512 3300006175 Bacteria 2197
27 Ga0068871_100330482 3300006358 Bacteria 1344
28 Ga0075433_10056782 3300006852 Unclassified 3421
29 Ga0075434_100085668 3300006871 Bacteria 3150
30 Ga0075435_100131194 3300007076 Bacteria 2097
31 Ga0105245_10313844 3300009098 Bacteria 1542
32 Ga0105248_10828183 3300009177 Unclassified 1044
33 Ga0099796_10105899 3300010159 Unclassified 1065
34 Ga0157373_10249087 3300013100 Bacteria 1256
35 Ga0157371_10180119 3300013102 Bacteria 1511
36 Ga0157370_10230829 3300013104 Bacteria 1713
37 Ga0157369_10017430 3300013105 Bacteria 8070
38 Ga0157369_10021070 3300013105 Bacteria 7286
39 Ga0157369_10049796 3300013105 Unclassified 4539
40 Ga0157369_10174568 3300013105 Bacteria 2263
41 Ga0157369_10192137 3300013105 Bacteria 2145
42 Ga0157369_10343628 3300013105 Bacteria 1550
43 Ga0157374_10140509 3300013296 Bacteria 2344
44 Ga0163162_10811239 3300013306 Unclassified 1053
45 Ga0157372_10038384 3300013307 Bacteria 5284
46 Ga0157372_10073537 3300013307 Bacteria 3853
47 Ga0157372_10457485 3300013307 Unclassified 1487
48 Ga0163163_10002790 3300014325 Bacteria 14756
49 Ga0157376_10035478 3300014969 Bacteria 4034
50 Ga0213872_10000378 3300021361 Bacteria 37429
51 Ga0213874_10002902 3300021377 Unclassified 3742
52 Ga0213876_10005392 3300021384 Bacteria 7038
53 Ga0213876_10080145 3300021384 Archaea 1726
54 Ga0213876_10085957 3300021384 Bacteria 1664
55 Ga0213876_10103228 3300021384 Bacteria 1512
56 Ga0213876_10137412 3300021384 Bacteria 1300
57 Ga0213875_10000005 3300021388 Bacteria 595146
58 Ga0213875_10004534 3300021388 Bacteria 7595
59 Ga0213875_10009580 3300021388 Bacteria 4898
60 Ga0213875_10017302 3300021388 Bacteria 3484
61 Ga0213875_10035539 3300021388 Bacteria 2351
62 Ga0213875_10044217 3300021388 Unclassified 2092
63 Ga0213875_10176913 3300021388 Bacteria 1002
64 Ga0207692_10268109 3300025898 Unclassified 1029
65 Ga0207707_10536722 3300025912 Unclassified 995
66 Ga0207693_10133779 3300025915 Bacteria 1949
67 Ga0207657_10233468 3300025919 Bacteria 1470
68 Ga0207664_10026139 3300025929 Bacteria 4408
69 Ga0207664_10156144 3300025929 Bacteria 1943
70 Ga0207664_10263748 3300025929 Unclassified 1507
71 Ga0207690_10114085 3300025932 Bacteria 1951
72 Ga0207690_10265812 3300025932 Unclassified 1331
73 Ga0207706_11016060 3300025933 Bacteria 696
74 Ga0207669_10557607 3300025937 Bacteria 925
75 Ga0207691_10154119 3300025940 Bacteria 2019
76 Ga0207711_10757920 3300025941 Bacteria 905
77 Ga0207679_10044872 3300025945 Bacteria 3193
78 Ga0207667_10037307 3300025949 Bacteria 5196
79 Ga0207651_10214768 3300025960 Bacteria 1551
80 Ga0207703_10130513 3300026035 Bacteria 2169
81 Ga0207639_10007011 3300026041 Bacteria 7680
82 Ga0207678_10255809 3300026067 Bacteria 1500
83 Ga0207702_10010358 3300026078 Bacteria 7808
84 Ga0207702_10274383 3300026078 Bacteria 1591
85 Ga0207674_10513668 3300026116 Bacteria 1157
86 Ga0268266_10000484 3300028379 Bacteria 57173
87 Ga0373943_0427678 3300035170 Bacteria 767
88 Ga0373937_0621935 3300036401 Bacteria 1025
89 Ga0395899_0424231 3300037312 Unclassified 876
90 Ga0395900_0117647 3300037418 Unclassified 2727
91 Ga0395898_0218389 3300037466 Bacteria 1819
92 Ga0436364_0071918 3300037853 Bacteria 19970
93 Ga0436364_0119736 3300037853 Bacteria 3557
94 Ga0436364_0157811 3300037853 Bacteria 430293
95 Ga0436364_0268385 3300037853 Bacteria 9486
96 Ga0436364_0392245 3300037853 Bacteria 15135
97 Ga0436364_0407560 3300037853 Bacteria 5374
98 Ga0436364_0416094 3300037853 Bacteria 9650
99 Ga0436364_0483546 3300037853 Bacteria 7875
100 Ga0436364_0590278 3300037853 Bacteria 85826
101 Ga0436364_1006680 3300037853 Bacteria 1081
102 Ga0436364_1081577 3300037853 Bacteria 2660
103 Ga0436364_1106992 3300037853 Bacteria 2801
104 Ga0436364_1154250 3300037853 Bacteria 952
105 Ga0436364_1221693 3300037853 Bacteria 1971
106 Ga0436364_1338393 3300037853 Unclassified 2953
107 Ga0436364_1458261 3300037853 Bacteria 7869
108 Ga0436364_1484127 3300037853 Bacteria 808
109 Ga0436364_1525300 3300037853 Bacteria 2559
110 Ga0395901_0135586 3300038443 Bacteria 2588
111 Ga0436365_0203997 3300039437 Bacteria 2631
112 Ga0436365_0270271 3300039437 Bacteria 17095
113 Ga0436365_0317844 3300039437 Bacteria 2561
114 Ga0436365_0384812 3300039437 Bacteria 2513
115 Ga0436365_0798016 3300039437 Unclassified 798
116 Ga0436365_1216199 3300039437 Bacteria 1132
117 Ga0436365_1301958 3300039437 Bacteria 2191
118 Ga0436365_1353320 3300039437 Unclassified 3594
119 Ga0436365_1930851 3300039437 Bacteria 5285
120 Ga0436360_0614950 3300039438 Unclassified 1772
121 Ga0436361_0786779 3300039447 Bacteria 144856
122 Ga0436361_1208573 3300039447 Unclassified 3095
123 Ga0436363_0025423 3300039450 Unclassified 1210
124 Ga0436363_0035392 3300039450 Unclassified 3819
125 Ga0436363_0355871 3300039450 Unclassified 922
126 Ga0436363_0978158 3300039450 Bacteria 6590
127 Ga0436363_1678878 3300039450 Unclassified 1266
128 Ga0436362_0031369 3300039453 Bacteria 5115
129 Ga0436362_0132186 3300039453 Unclassified 1253
130 Ga0466966_0119604 3300044684 Unclassified 1619
131 Ga0453684_0835680 3300044712 Bacteria 991
132 Ga0466959_0057802 3300045049 Unclassified 2827
133 Ga0466958_0557546 3300045836 Bacteria 745
134 Ga0466967_1027725 3300045976 Bacteria 821
135 Ga0495628_0215269 3300046516 Bacteria 1444
136 Ga0495640_0358484 3300046533 Unclassified 899
137 Ga0495604_0309952 3300047317 Unclassified 1058
138 Ga0495675_0313516 3300047444 Unclassified 929
139 Ga0496106_0847954 3300048909 Bacteria 723
140 Ga0496112_0081505 3300048915 Bacteria 3200
141 Ga0496126_0118882 3300048929 Unclassified 2294
142 Ga0501032_0261417 3300049569 Bacteria 1122
143 Ga0501034_0226782 3300049571 Bacteria 1819
144 Ga0501037_0142456 3300049573 Bacteria 1715
145 Ga0501038_0247291 3300049574 Unclassified 1414
146 Ga0501043_0003200 3300049579 Bacteria 13542
147 Ga0501043_0577123 3300049579 Bacteria 833
148 Ga0501046_0000007 3300049580 Bacteria 356002
149 Ga0501047_0025470 3300049581 Bacteria 5687
150 Ga0501047_0151844 3300049581 Unclassified 2192
151 Ga0501048_0000476 3300049582 Bacteria 27985
152 Ga0501048_0017962 3300049582 Bacteria 5205
153 Ga0501070_0032802 3300049586 Unclassified 4345
154 Ga0501080_0129711 3300049742 Unclassified 2334
155 Ga0501080_0419216 3300049742 Bacteria 1203
156 Ga0501083_0000103 3300049744 Bacteria 57259
157 Ga0501035_0007667 3300049822 Bacteria 10083
158 Ga0501035_0020123 3300049822 Bacteria 6129
159 Ga0501044_0000537 3300049823 Bacteria 45993
160 Ga0501044_0001863 3300049823 Bacteria 24450
161 Ga0501044_0005364 3300049823 Bacteria 14247
162 Ga0501045_0252581 3300049824 Bacteria 1312
163 Ga0501082_0042160 3300060353 Bacteria 3935

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300039437 Ga0436365_1216199 Ga0436365_1216199_457_1122 166
2 3300021384 Ga0213876_10005392 Ga0213876_100053922 170
3 3300049579 Ga0501043_0577123 Ga0501043_0577123_55_639 173
4 3300035170 Ga0373943_0427678 Ga0373943_0427678_24_611 178
5 3300037853 Ga0436364_1081577 Ga0436364_1081577_45_680 181
6 3300039437 Ga0436365_0270271 Ga0436365_0270271_6477_7109 183
7 3300037853 Ga0436364_0407560 Ga0436364_0407560_509_1147 185
8 3300044712 Ga0453684_0835680 Ga0453684_0835680_149_754 185
9 3300049571 Ga0501034_0226782 Ga0501034_0226782_65_712 185
10 3300049573 Ga0501037_0142456 Ga0501037_0142456_152_799 185
11 3300049581 Ga0501047_0025470 Ga0501047_0025470_4735_5382 185
12 3300049581 Ga0501047_0151844 Ga0501047_0151844_909_1556 185
13 3300049586 Ga0501070_0032802 Ga0501070_0032802_2974_3621 185
14 3300049742 Ga0501080_0419216 Ga0501080_0419216_305_952 185
15 3300049823 Ga0501044_0000537 Ga0501044_0000537_5247_5894 185
16 3300049823 Ga0501044_0001863 Ga0501044_0001863_5295_5942 185
17 3300021377 Ga0213874_10002902 Ga0213874_100029024 190
18 3300021384 Ga0213876_10103228 Ga0213876_101032283 190
19 3300021388 Ga0213875_10009580 Ga0213875_100095803 191
20 3300037853 Ga0436364_0416094 Ga0436364_0416094_7021_7677 191
21 3300039437 Ga0436365_1301958 Ga0436365_1301958_497_1159 192
22 3300039437 Ga0436365_0798016 Ga0436365_0798016_28_690 193
23 3300039450 Ga0436363_1678878 Ga0436363_1678878_329_994 193
24 3300005337 Ga0070682_100027778 Ga0070682_1000277781 194
25 3300005344 Ga0070661_100011530 Ga0070661_1000115303 194
26 3300005366 Ga0070659_100077567 Ga0070659_1000775672 194
27 3300005366 Ga0070659_100247045 Ga0070659_1002470452 194
28 3300005435 Ga0070714_100015896 Ga0070714_1000158962 194
29 3300005435 Ga0070714_100078567 Ga0070714_1000785673 194
30 3300005436 Ga0070713_100509473 Ga0070713_1005094732 194
31 3300005539 Ga0068853_100012088 Ga0068853_1000120882 194
32 3300005563 Ga0068855_100009384 Ga0068855_1000093842 194
33 3300005564 Ga0070664_100062647 Ga0070664_1000626472 194
34 3300005614 Ga0068856_100004531 Ga0068856_1000045314 194
35 3300005614 Ga0068856_100085569 Ga0068856_1000855692 194
36 3300005937 Ga0081455_10067838 Ga0081455_100678383 194
37 3300006175 Ga0070712_100094512 Ga0070712_1000945122 194
38 3300006358 Ga0068871_100330482 Ga0068871_1003304821 194
39 3300013100 Ga0157373_10249087 Ga0157373_102490871 194
40 3300013102 Ga0157371_10180119 Ga0157371_101801192 194
41 3300013104 Ga0157370_10230829 Ga0157370_102308292 194
42 3300013105 Ga0157369_10017430 Ga0157369_100174302 194
43 3300013105 Ga0157369_10021070 Ga0157369_100210704 194
44 3300013105 Ga0157369_10174568 Ga0157369_101745683 194
45 3300013105 Ga0157369_10192137 Ga0157369_101921372 194
46 3300013296 Ga0157374_10140509 Ga0157374_101405092 194
47 3300013306 Ga0163162_10811239 Ga0163162_108112392 194
48 3300013307 Ga0157372_10038384 Ga0157372_100383842 194
49 3300013307 Ga0157372_10073537 Ga0157372_100735374 194
50 3300014325 Ga0163163_10002790 Ga0163163_100027902 194
51 3300014969 Ga0157376_10035478 Ga0157376_100354783 194
52 3300021361 Ga0213872_10000378 Ga0213872_1000037830 194
53 3300021384 Ga0213876_10080145 Ga0213876_100801452 194
54 3300021384 Ga0213876_10085957 Ga0213876_100859573 194
55 3300021384 Ga0213876_10137412 Ga0213876_101374122 194
56 3300021388 Ga0213875_10000005 Ga0213875_10000005314 194
57 3300021388 Ga0213875_10004534 Ga0213875_100045342 194
58 3300021388 Ga0213875_10017302 Ga0213875_100173022 194
59 3300021388 Ga0213875_10035539 Ga0213875_100355392 194
60 3300021388 Ga0213875_10044217 Ga0213875_100442172 194
61 3300021388 Ga0213875_10176913 Ga0213875_101769132 194
62 3300025912 Ga0207707_10536722 Ga0207707_105367222 194
63 3300025915 Ga0207693_10133779 Ga0207693_101337792 194
64 3300025919 Ga0207657_10233468 Ga0207657_102334682 194
65 3300025929 Ga0207664_10156144 Ga0207664_101561442 194
66 3300025932 Ga0207690_10114085 Ga0207690_101140852 194
67 3300025932 Ga0207690_10265812 Ga0207690_102658122 194
68 3300025945 Ga0207679_10044872 Ga0207679_100448722 194
69 3300025949 Ga0207667_10037307 Ga0207667_100373075 194
70 3300026041 Ga0207639_10007011 Ga0207639_100070116 194
71 3300026078 Ga0207702_10010358 Ga0207702_100103584 194
72 3300026078 Ga0207702_10274383 Ga0207702_102743832 194
73 3300037853 Ga0436364_0071918 Ga0436364_0071918_15675_16340 194
74 3300037853 Ga0436364_0119736 Ga0436364_0119736_2113_2778 194
75 3300037853 Ga0436364_0157811 Ga0436364_0157811_226561_227226 194
76 3300037853 Ga0436364_0268385 Ga0436364_0268385_6253_6918 194
77 3300037853 Ga0436364_0392245 Ga0436364_0392245_6175_6840 194
78 3300037853 Ga0436364_0483546 Ga0436364_0483546_2442_3104 194
79 3300037853 Ga0436364_1006680 Ga0436364_1006680_196_861 194
80 3300037853 Ga0436364_1106992 Ga0436364_1106992_521_1186 194
81 3300037853 Ga0436364_1154250 Ga0436364_1154250_276_941 194
82 3300037853 Ga0436364_1221693 Ga0436364_1221693_710_1375 194
83 3300037853 Ga0436364_1338393 Ga0436364_1338393_350_1018 194
84 3300037853 Ga0436364_1458261 Ga0436364_1458261_2757_3422 194
85 3300037853 Ga0436364_1484127 Ga0436364_1484127_34_699 194
86 3300038443 Ga0395901_0135586 Ga0395901_0135586_1797_2444 194
87 3300039437 Ga0436365_0203997 Ga0436365_0203997_1160_1825 194
88 3300039437 Ga0436365_0317844 Ga0436365_0317844_1117_1782 194
89 3300039437 Ga0436365_1353320 Ga0436365_1353320_2431_3096 194
90 3300039437 Ga0436365_1930851 Ga0436365_1930851_1286_1948 194
91 3300039438 Ga0436360_0614950 Ga0436360_0614950_808_1473 194
92 3300039447 Ga0436361_0786779 Ga0436361_0786779_132320_132985 194
93 3300039447 Ga0436361_1208573 Ga0436361_1208573_16_681 194
94 3300039450 Ga0436363_0035392 Ga0436363_0035392_1658_2323 194
95 3300039450 Ga0436363_0978158 Ga0436363_0978158_1294_1959 194
96 3300039453 Ga0436362_0031369 Ga0436362_0031369_2477_3142 194
97 3300039453 Ga0436362_0132186 Ga0436362_0132186_89_751 194
98 3300045976 Ga0466967_1027725 Ga0466967_1027725_19_684 194
99 3300046516 Ga0495628_0215269 Ga0495628_0215269_107_742 194
100 3300046533 Ga0495640_0358484 Ga0495640_0358484_127_762 194
101 3300047317 Ga0495604_0309952 Ga0495604_0309952_314_949 194
102 3300047444 Ga0495675_0313516 Ga0495675_0313516_72_707 194
103 3300048915 Ga0496112_0081505 Ga0496112_0081505_456_1124 194
104 3300049569 Ga0501032_0261417 Ga0501032_0261417_420_1061 194
105 3300049574 Ga0501038_0247291 Ga0501038_0247291_702_1349 194
106 3300049579 Ga0501043_0003200 Ga0501043_0003200_10490_11131 194
107 3300049580 Ga0501046_0000007 Ga0501046_0000007_231768_232409 194
108 3300049582 Ga0501048_0000476 Ga0501048_0000476_18669_19310 194
109 3300049582 Ga0501048_0017962 Ga0501048_0017962_3127_3774 194
110 3300049742 Ga0501080_0129711 Ga0501080_0129711_1300_1947 194
111 3300049744 Ga0501083_0000103 Ga0501083_0000103_23691_24332 194
112 3300049822 Ga0501035_0007667 Ga0501035_0007667_3253_3894 194
113 3300049822 Ga0501035_0020123 Ga0501035_0020123_4185_4832 194
114 3300049823 Ga0501044_0005364 Ga0501044_0005364_7165_7806 194
115 3300049824 Ga0501045_0252581 Ga0501045_0252581_38_679 194
116 3300060353 Ga0501082_0042160 Ga0501082_0042160_2104_2745 194
117 3300005548 Ga0070665_100009969 Ga0070665_1000099698 195
118 3300028379 Ga0268266_10000484 Ga0268266_100004849 195
119 3300005329 Ga0070683_100491270 Ga0070683_1004912702 196
120 3300005339 Ga0070660_100446756 Ga0070660_1004467561 196
121 3300005356 Ga0070674_100225474 Ga0070674_1002254741 196
122 3300005455 Ga0070663_100280229 Ga0070663_1002802291 196
123 3300005458 Ga0070681_10578363 Ga0070681_105783631 196
124 3300005577 Ga0068857_101261626 Ga0068857_1012616261 196
125 3300005578 Ga0068854_100903312 Ga0068854_1009033122 196
126 3300009177 Ga0105248_10828183 Ga0105248_108281832 196
127 3300013105 Ga0157369_10049796 Ga0157369_100497962 196
128 3300013105 Ga0157369_10343628 Ga0157369_103436282 196
129 3300013307 Ga0157372_10457485 Ga0157372_104574852 196
130 3300025933 Ga0207706_11016060 Ga0207706_110160601 196
131 3300025937 Ga0207669_10557607 Ga0207669_105576072 196
132 3300025940 Ga0207691_10154119 Ga0207691_101541192 196
133 3300025941 Ga0207711_10757920 Ga0207711_107579202 196
134 3300025960 Ga0207651_10214768 Ga0207651_102147682 196
135 3300026067 Ga0207678_10255809 Ga0207678_102558092 196
136 3300026116 Ga0207674_10513668 Ga0207674_105136682 196
137 3300037312 Ga0395899_0424231 Ga0395899_0424231_70_720 196
138 3300037418 Ga0395900_0117647 Ga0395900_0117647_1477_2127 196
139 3300037466 Ga0395898_0218389 Ga0395898_0218389_1072_1722 196
140 3300039437 Ga0436365_0384812 Ga0436365_0384812_1506_2177 196
141 3300039450 Ga0436363_0355871 Ga0436363_0355871_112_786 196
142 3300006028 Ga0070717_10004527 Ga0070717_100045272 197
143 3300006852 Ga0075433_10056782 Ga0075433_100567824 197
144 3300006871 Ga0075434_100085668 Ga0075434_1000856683 197
145 3300007076 Ga0075435_100131194 Ga0075435_1001311942 197
146 3300025898 Ga0207692_10268109 Ga0207692_102681092 197
147 3300025929 Ga0207664_10263748 Ga0207664_102637482 197
148 3300036401 Ga0373937_0621935 Ga0373937_0621935_70_714 197
149 3300037853 Ga0436364_1525300 Ga0436364_1525300_1701_2375 197
150 3300039450 Ga0436363_0025423 Ga0436363_0025423_130_804 197
151 3300009098 Ga0105245_10313844 Ga0105245_103138441 198
152 3300026035 Ga0207703_10130513 Ga0207703_101305132 198
153 3300048909 Ga0496106_0847954 Ga0496106_0847954_36_680 198
154 3300044684 Ga0466966_0119604 Ga0466966_0119604_285_965 199
155 3300045049 Ga0466959_0057802 Ga0466959_0057802_1787_2467 199
156 3300045836 Ga0466958_0557546 Ga0466958_0557546_42_722 199
157 3300048929 Ga0496126_0118882 Ga0496126_0118882_937_1599 199
158 3300005548 Ga0070665_100067157 Ga0070665_1000671574 200
159 3300005616 Ga0068852_100225168 Ga0068852_1002251682 200
160 3300010159 Ga0099796_10105899 Ga0099796_101058992 200
161 3300037853 Ga0436364_0590278 Ga0436364_0590278_59877_60578 201
162 3300003322 rootL2_10385613 rootL2_103856132 202
163 3300025929 Ga0207664_10026139 Ga0207664_100261393 202

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00072

Response_reg

Response regulator receiver domain

22

134

0.97

PF00196

GerE

Bacterial regulatory proteins, luxR family

158

214

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
7x1k-assembly1.cif.gz_B crystal structure of the flagellar expression regulator degu from listeria monocytogenes 0.9925 138 202
7r3i-assembly1.cif.gz_A pross optimitzed variant of rhlr (61 mutations) in complex with the synthetic antagonist mbtl 0.9803 139 199
3ulq-assembly1.cif.gz_B crystal structure of the anti-activator rapf complexed with the response regulator coma dna binding domain 0.9792 139 194
7r3h-assembly2.cif.gz_C pross optimitzed variant of rhlr (75 mutations) in complex with native autoinducer c4-hsl 0.9788 139 199
1fse-assembly2.cif.gz_C crystal structure of the bacillus subtilis regulatory protein gere 0.9763 139 201
ID Description Score Start End Superfamily
4hyeB02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 1.004 138 197 1.10.10.10
af_Q11028_1077_1158_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9856 139 195 1.10.10.10
3ulqB00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9792 139 194 1.10.10.10
3cloA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9781 139 194 1.10.10.10
4hyeA02 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9765 139 198 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A257V554-F1-model_v4 DNA-binding response regulator 0.9079 3 201 GO:0000160
GO:0003677
GO:0006355
AF-A0A257V554-F1-model_v4 DNA-binding response regulator 0.8911 3 201 GO:0000160
GO:0003677
GO:0006355
AF-A0A1C2GGC1-F1-model_v4 DNA-binding response regulator 0.8609 9 199 GO:0000160
GO:0003677
GO:0006355
AF-A0A2V8QEV4-F1-model_v4 DNA-binding response regulator 0.8594 33 202 GO:0000160
GO:0003677
GO:0006355
AF-A0A4Z0KF05-F1-model_v4 DNA-binding response regulator 0.8552 5 198 GO:0000160
GO:0003677
GO:0006355

Feature Viewer

pLDDT pTM Quality
81.92 0.58 Medium
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Predicted Structure (AlphaFold2)

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