F241116

General Info

Members Datasets Scaffolds Average Seq Length
163 115 326 385

Family's Representative Sequence

Representative Sequence 3300005468|Ga0070707_100073135|Ga0070707_1000731352
Length 408
Sequence VTDPEEIVRVAAKGDGVTASGRHAPLAAPGDLLLADGTLQPGPHRATPPCRHFALRQAQGCGGCQLQHLDEQALAGFVRDRVLNAAEGQGLAPERVAPVHLSPPRTRRRATLRAINGGGRPLIGFNEAGAHRVVDMRECHILSPRLFALVEPLRALLAPRRERYAAEIQLALAVQGVDCAIKGLALDGLAQTEALLDFCRDQRLARLTLDQGYGPETLWEPEPLTVTLSGVPADFPAGSFLQATADGEAALAHAVRDWLAGSVAVADLFAGLGTFAFALAGPARVLAAEAARDAHQACRAAAARARLPLEAVHRDLFRNPLQTDELARFDAVVLDPPRAGAHEQVIQLAAAAVPRIAYVSCNPSSWARDARVLADSGYRLAELRPVGQFRWSTHVELASLFVRGDAFG

Samples

Sample ID Description Type Environment
1 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
2 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
3 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
4 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
5 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
6 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
7 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
8 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
9 3300005353 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG Metagenome Rhizosphere
10 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
11 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
12 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
13 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
14 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
15 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
16 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
17 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
18 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
19 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
20 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
21 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
22 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
23 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
24 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
25 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
26 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
27 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
28 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
29 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
30 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
31 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
32 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
33 3300025711 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
39 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
40 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
50 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300031616 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM Metagenome Unclassified
53 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
54 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
55 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
56 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
57 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
58 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
59 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
60 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
61 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
62 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
63 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
64 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
65 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
66 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
67 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
68 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
69 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
70 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
71 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
72 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
73 3300042436 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0113LE14Z081617_5520 Metagenome Rhizosphere
74 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
75 3300044693 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R Metagenome Rhizosphere
76 3300046684 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 rhizosphere Metagenome Rhizosphere
77 3300048090 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 rhizosphere Metagenome Rhizosphere
78 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
79 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
80 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
81 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
82 3300048910 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 Metagenome Rhizoplane
83 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
84 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
85 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
86 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
87 3300048923 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2f N15 Metagenome Unclassified
88 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
89 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
90 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
91 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
92 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
93 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
94 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
95 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
96 3300053083 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-866-Co2_58_19 rhizosphere Metagenome Rhizosphere
97 3300053087 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere Metagenome Endosphere
98 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
99 3300053120 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 endosphere Metagenome Endosphere
100 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
101 3300053151 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co1_22_4 endosphere Metagenome Endosphere
102 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
103 3300053157 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-86-CL2_69_17 endosphere Metagenome Endosphere
104 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
105 2643221588 Altererythrobacter sp. Root672 Isolate Unclassified
106 2738541275 Novosphingobium sp. GV027 Isolate Unclassified
107 2738541301 Novosphingobium sp. GV079 Isolate Unclassified
108 2738541304 Novosphingobium sp. GV061 Isolate Unclassified
109 2738543022 Novosphingobium sp. GV055 Isolate Unclassified
110 2738543033 Novosphingobium sp. GV064 Isolate Unclassified
111 2848297114 Croceibacterium ferulae EGI 63111 Isolate Unclassified
112 2895880812 Frankia sp. BMG5.11 Isolate Unclassified
113 2896429255 Sphingomonas rhizophila KACC 19189 Isolate Rhizosphere
114 2928100450 Novosphingobium sp. 1529 Isolate Rhizosphere
115 2928959182 Novosphingobium capsulatum 1057 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 93.25
Metatranscriptomes 0
Isolates 6.75

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.91
Nodule 0
Rhizoplane 4.29
Rhizosphere 76.69
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070707_100073135 3300005468 Bacteria 3305
2 SwRhRL2b_contig_1431144 2162886007 Bacteria 3928
3 Ga0065704_10071330 3300005289 Bacteria 11689
4 Ga0070658_10065091 3300005327 Bacteria 2974
5 Ga0070658_10112046 3300005327 Bacteria 2261
6 Ga0070680_100239368 3300005336 Bacteria 1534
7 Ga0068868_100071436 3300005338 Bacteria 2768
8 Ga0070660_100014850 3300005339 Bacteria 5621
9 Ga0070660_100094998 3300005339 Bacteria 2356
10 Ga0070668_100119972 3300005347 Bacteria 2101
11 Ga0070669_100003132 3300005353 Bacteria 11894
12 Ga0070675_100007947 3300005354 Bacteria 8222
13 Ga0070659_100135960 3300005366 Bacteria 1999
14 Ga0070667_100017534 3300005367 Bacteria 5935
15 Ga0070663_100042898 3300005455 Bacteria 3181
16 Ga0070662_100003070 3300005457 Bacteria 10367
17 Ga0070662_100003174 3300005457 Bacteria 10217
18 Ga0070662_100031112 3300005457 Bacteria 3742
19 Ga0070681_10047280 3300005458 Bacteria 4301
20 Ga0070679_100046456 3300005530 Bacteria 4328
21 Ga0070679_100073831 3300005530 Bacteria 3402
22 Ga0070665_100224544 3300005548 Bacteria 1879
23 Ga0068855_100047107 3300005563 Bacteria 5094
24 Ga0068854_100000126 3300005578 Bacteria 52604
25 Ga0068854_100002051 3300005578 Bacteria 12337
26 Ga0068854_100049394 3300005578 Bacteria 3004
27 Ga0068856_100009820 3300005614 Bacteria 9295
28 Ga0068856_100074855 3300005614 Bacteria 3353
29 Ga0068852_100132164 3300005616 Bacteria 2300
30 Ga0068859_100365429 3300005617 Bacteria 1538
31 Ga0068860_100036070 3300005843 Bacteria 4740
32 Ga0068862_100005421 3300005844 Bacteria 10653
33 Ga0068862_100347406 3300005844 Bacteria 1375
34 Ga0097620_100365429 3300006931 Bacteria 1538
35 Ga0105240_10033440 3300009093 Bacteria 6643
36 Ga0105247_10138438 3300009101 Bacteria 1593
37 Ga0105248_10098294 3300009177 Bacteria 3297
38 Ga0157373_10054016 3300013100 Bacteria 2855
39 Ga0157371_10228362 3300013102 Bacteria 1337
40 Ga0163161_10001436 3300017792 Bacteria 17585
41 Ga0213874_10003979 3300021377 Bacteria 3328
42 Ga0207696_1008135 3300025711 Bacteria 4044
43 Ga0207705_10002842 3300025909 Bacteria 13242
44 Ga0207705_10064136 3300025909 Bacteria 2655
45 Ga0207705_10076181 3300025909 Bacteria 2438
46 Ga0207707_10006125 3300025912 Bacteria 10514
47 Ga0207660_10002493 3300025917 Bacteria 12101
48 Ga0207657_10005878 3300025919 Bacteria 12782
49 Ga0207657_10008267 3300025919 Bacteria 10592
50 Ga0207657_10111707 3300025919 Bacteria 2256
51 Ga0207652_10015345 3300025921 Bacteria 6220
52 Ga0207652_10017734 3300025921 Bacteria 5830
53 Ga0207681_10001207 3300025923 Bacteria 16625
54 Ga0207644_10005315 3300025931 Bacteria 8406
55 Ga0207690_10053960 3300025932 Bacteria 2700
56 Ga0207706_10013943 3300025933 Bacteria 7288
57 Ga0207667_10144488 3300025949 Bacteria 2449
58 Ga0207668_10016896 3300025972 Bacteria 4565
59 Ga0207668_10118542 3300025972 Bacteria 2000
60 Ga0207668_10242861 3300025972 Bacteria 1458
61 Ga0207640_10062352 3300025981 Bacteria 2473
62 Ga0207658_10007196 3300025986 Bacteria 7587
63 Ga0207678_10002627 3300026067 Bacteria 16366
64 Ga0207678_10085408 3300026067 Bacteria 2698
65 Ga0207678_10086827 3300026067 Bacteria 2673
66 Ga0207678_10095890 3300026067 Bacteria 2535
67 Ga0207702_10031046 3300026078 Bacteria 4453
68 Ga0207674_10005899 3300026116 Bacteria 14519
69 Ga0207698_10212699 3300026142 Bacteria 1741
70 Ga0268266_10182907 3300028379 Bacteria 1909
71 Ga0307508_10079875 3300031616 Bacteria 2852
72 Ga0307405_10091489 3300031731 Bacteria 2016
73 Ga0307413_10015603 3300031824 Bacteria 3899
74 Ga0307413_10180576 3300031824 Bacteria 1504
75 Ga0307410_10010906 3300031852 Bacteria 5173
76 Ga0307410_10021774 3300031852 Bacteria 3949
77 Ga0307410_10060654 3300031852 Bacteria 2586
78 Ga0307406_10047239 3300031901 Bacteria 2712
79 Ga0307406_10146589 3300031901 Bacteria 1678
80 Ga0307406_10235737 3300031901 Bacteria 1369
81 Ga0307407_10031445 3300031903 Bacteria 2874
82 Ga0307412_10041973 3300031911 Bacteria 2968
83 Ga0307409_100027292 3300031995 Bacteria 4044
84 Ga0307409_100055382 3300031995 Bacteria 3061
85 Ga0307409_100106275 3300031995 Bacteria 2342
86 Ga0307409_100107490 3300031995 Bacteria 2331
87 Ga0307416_100031024 3300032002 Bacteria 4019
88 Ga0307416_100143987 3300032002 Bacteria 2172
89 Ga0307416_100504944 3300032002 Bacteria 1274
90 Ga0307414_10017196 3300032004 Bacteria 4418
91 Ga0307414_10058578 3300032004 Bacteria 2714
92 Ga0307414_10094113 3300032004 Bacteria 2235
93 Ga0307414_10273514 3300032004 Bacteria 1416
94 Ga0307411_10014906 3300032005 Bacteria 4343
95 Ga0307411_10033821 3300032005 Bacteria 3174
96 Ga0307411_10092875 3300032005 Bacteria 2111
97 Ga0307411_10097120 3300032005 Bacteria 2073
98 Ga0307415_100009218 3300032126 Bacteria 5517
99 Ga0307415_100013397 3300032126 Bacteria 4787
100 Ga0307415_100117834 3300032126 Bacteria 1984
101 Ga0307415_100179327 3300032126 Bacteria 1660
102 Ga0307415_100260439 3300032126 Bacteria 1415
103 Ga0316582_0007139 3300036647 Bacteria 5935
104 Ga0316584_0021706 3300036712 Bacteria 4671
105 Ga0316584_0041253 3300036712 Bacteria 3440
106 Ga0395899_0001237 3300037312 Bacteria 22285
107 Ga0395899_0047778 3300037312 Bacteria 3186
108 Ga0395899_0099538 3300037312 Bacteria 2100
109 Ga0395900_0000471 3300037418 Bacteria 57583
110 Ga0395898_0294467 3300037466 Bacteria 1548
111 Ga0395905_0001992 3300037471 Bacteria 23333
112 Ga0395905_0102594 3300037471 Bacteria 2685
113 Ga0395901_0000064 3300038443 Bacteria 147477
114 Ga0395901_0006441 3300038443 Bacteria 11897
115 Ga0395901_0254134 3300038443 Bacteria 1830
116 Ga0436363_0815994 3300039450 Bacteria 2315
117 Ga0439462_0000816 3300042015 Bacteria 6502
118 Ga0439435_0010649 3300042436 Bacteria 2189
119 Ga0466966_0139956 3300044684 Bacteria 1479
120 Ga0466961_0012435 3300044693 Bacteria 5445
121 Ga0495669_0070642 3300046684 Bacteria 1591
122 Ga0495615_0014131 3300048090 Bacteria 1682
123 Ga0496102_0000305 3300048905 Bacteria 62646
124 Ga0496103_0000475 3300048906 Bacteria 33792
125 Ga0496104_0000293 3300048907 Bacteria 44125
126 Ga0496105_0003464 3300048908 Bacteria 11669
127 Ga0496107_0050270 3300048910 Bacteria 3005
128 Ga0496112_0013635 3300048915 Bacteria 7511
129 Ga0496113_0000622 3300048916 Bacteria 17801
130 Ga0496117_0004639 3300048920 Bacteria 14963
131 Ga0496119_0000040 3300048922 Bacteria 208180
132 Ga0496120_0004492 3300048923 Bacteria 11674
133 Ga0496121_0004304 3300048924 Bacteria 19288
134 Ga0496121_0021930 3300048924 Bacteria 6229
135 Ga0496122_0003521 3300048925 Bacteria 20526
136 Ga0496123_0003210 3300048926 Bacteria 18637
137 Ga0496124_0038179 3300048927 Bacteria 4170
138 Ga0496125_0009000 3300048928 Bacteria 10348
139 Ga0496126_0000044 3300048929 Bacteria 335904
140 Ga0496126_0046792 3300048929 Bacteria 3964
141 Ga0501047_0047466 3300049581 Bacteria 4149
142 Ga0501044_0000346 3300049823 Bacteria 58137
143 Ga0501044_0051793 3300049823 Bacteria 4232
144 Ga0495655_0005563 3300053083 Bacteria 2235
145 Ga0500643_000004 3300053087 Bacteria 857484
146 Ga0500562_002669 3300053108 Bacteria 4439
147 Ga0500597_103182 3300053120 Bacteria 1239
148 Ga0500568_0003613 3300053139 Bacteria 8538
149 Ga0500604_0000008 3300053151 Bacteria 114485
150 Ga0500616_0000447 3300053153 Bacteria 54047
151 Ga0500624_000043 3300053157 Bacteria 90095
152 Ga0500637_0001605 3300053178 Bacteria 9695
153 2643949465 2643221588 Bacteria 3692460
154 2738709999 2738541275 Bacteria 4830863
155 2738848424 2738541301 Bacteria 4834102
156 2738864153 2738541304 Bacteria 4833665
157 2739296671 2738543022 Bacteria 4835059
158 2739358349 2738543033 Bacteria 4833336
159 2848299052 2848297114 Bacteria 3608511
160 2895886267 2895880812 Bacteria 11255272
161 2896430316 2896429255 Bacteria 2557483
162 2928101698 2928100450 Bacteria 4837635
163 2928959788 2928959182 Bacteria 4725774
164 Ga0070707_100073135
165 SwRhRL2b_contig_1431144
166 Ga0065704_10071330
167 Ga0070658_10065091
168 Ga0070658_10112046
169 Ga0070680_100239368
170 Ga0068868_100071436
171 Ga0070660_100014850
172 Ga0070660_100094998
173 Ga0070668_100119972
174 Ga0070669_100003132
175 Ga0070675_100007947
176 Ga0070659_100135960
177 Ga0070667_100017534
178 Ga0070663_100042898
179 Ga0070662_100003070
180 Ga0070662_100003174
181 Ga0070662_100031112
182 Ga0070681_10047280
183 Ga0070679_100046456
184 Ga0070679_100073831
185 Ga0070665_100224544
186 Ga0068855_100047107
187 Ga0068854_100000126
188 Ga0068854_100002051
189 Ga0068854_100049394
190 Ga0068856_100009820
191 Ga0068856_100074855
192 Ga0068852_100132164
193 Ga0068859_100365429
194 Ga0068860_100036070
195 Ga0068862_100005421
196 Ga0068862_100347406
197 Ga0097620_100365429
198 Ga0105240_10033440
199 Ga0105247_10138438
200 Ga0105248_10098294
201 Ga0157373_10054016
202 Ga0157371_10228362
203 Ga0163161_10001436
204 Ga0213874_10003979
205 Ga0207696_1008135
206 Ga0207705_10002842
207 Ga0207705_10064136
208 Ga0207705_10076181
209 Ga0207707_10006125
210 Ga0207660_10002493
211 Ga0207657_10005878
212 Ga0207657_10008267
213 Ga0207657_10111707
214 Ga0207652_10015345
215 Ga0207652_10017734
216 Ga0207681_10001207
217 Ga0207644_10005315
218 Ga0207690_10053960
219 Ga0207706_10013943
220 Ga0207667_10144488
221 Ga0207668_10016896
222 Ga0207668_10118542
223 Ga0207668_10242861
224 Ga0207640_10062352
225 Ga0207658_10007196
226 Ga0207678_10002627
227 Ga0207678_10085408
228 Ga0207678_10086827
229 Ga0207678_10095890
230 Ga0207702_10031046
231 Ga0207674_10005899
232 Ga0207698_10212699
233 Ga0268266_10182907
234 Ga0307508_10079875
235 Ga0307405_10091489
236 Ga0307413_10015603
237 Ga0307413_10180576
238 Ga0307410_10010906
239 Ga0307410_10021774
240 Ga0307410_10060654
241 Ga0307406_10047239
242 Ga0307406_10146589
243 Ga0307406_10235737
244 Ga0307407_10031445
245 Ga0307412_10041973
246 Ga0307409_100027292
247 Ga0307409_100055382
248 Ga0307409_100106275
249 Ga0307409_100107490
250 Ga0307416_100031024
251 Ga0307416_100143987
252 Ga0307416_100504944
253 Ga0307414_10017196
254 Ga0307414_10058578
255 Ga0307414_10094113
256 Ga0307414_10273514
257 Ga0307411_10014906
258 Ga0307411_10033821
259 Ga0307411_10092875
260 Ga0307411_10097120
261 Ga0307415_100009218
262 Ga0307415_100013397
263 Ga0307415_100117834
264 Ga0307415_100179327
265 Ga0307415_100260439
266 Ga0316582_0007139
267 Ga0316584_0021706
268 Ga0316584_0041253
269 Ga0395899_0001237
270 Ga0395899_0047778
271 Ga0395899_0099538
272 Ga0395900_0000471
273 Ga0395898_0294467
274 Ga0395905_0001992
275 Ga0395905_0102594
276 Ga0395901_0000064
277 Ga0395901_0006441
278 Ga0395901_0254134
279 Ga0436363_0815994
280 Ga0439462_0000816
281 Ga0439435_0010649
282 Ga0466966_0139956
283 Ga0466961_0012435
284 Ga0495669_0070642
285 Ga0495615_0014131
286 Ga0496102_0000305
287 Ga0496103_0000475
288 Ga0496104_0000293
289 Ga0496105_0003464
290 Ga0496107_0050270
291 Ga0496112_0013635
292 Ga0496113_0000622
293 Ga0496117_0004639
294 Ga0496119_0000040
295 Ga0496120_0004492
296 Ga0496121_0004304
297 Ga0496121_0021930
298 Ga0496122_0003521
299 Ga0496123_0003210
300 Ga0496124_0038179
301 Ga0496125_0009000
302 Ga0496126_0000044
303 Ga0496126_0046792
304 Ga0501047_0047466
305 Ga0501044_0000346
306 Ga0501044_0051793
307 Ga0495655_0005563
308 Ga0500643_000004
309 Ga0500562_002669
310 Ga0500597_103182
311 Ga0500568_0003613
312 Ga0500604_0000008
313 Ga0500616_0000447
314 Ga0500624_000043
315 Ga0500637_0001605
316 2643949465
317 2738709999
318 2738848424
319 2738864153
320 2739296671
321 2739358349
322 2848299052
323 2895886267
324 2896430316
325 2928101698
326 2928959788

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF05958

tRNA_U5-meth_tr

tRNA (Uracil-5-)-methyltransferase

222

403

0.71

Structural Annotation

Top 5 Hits

ID Description Score Start End
5zq8-assembly1.cif.gz_B crystal structure of sprlmcd with u747 stemloop rna 0.8533 3 378
5zq8-assembly1.cif.gz_B crystal structure of sprlmcd with u747 stemloop rna 0.847 3 378
7tpu-assembly1.cif.gz_A crystal structure of a chitinase-modifying protein from fusarium vanettenii (fvan-cmp) 0.8375 328 375
5xj1-assembly1.cif.gz_A crystal structure of sprlmcd 0.8202 3 375
5xj1-assembly1.cif.gz_A crystal structure of sprlmcd 0.8084 3 375
ID Description Score Start End Superfamily
1uwvA03 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P); 0.8522 101 236 2.40.50.1070
1uwvA03 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P); 0.8464 101 236 2.40.50.1070
af_K7MXE5_59_230_2.40.50.1070 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P); 0.8215 101 231 2.40.50.1070
af_C0H5A2_319_480_2.40.50.1070 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P); 0.7894 101 235 2.40.50.1070
af_P75817_215_375_3.40.50.150 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Vaccinia Virus protein VP39 0.7747 241 377 3.40.50.150
ID Description Score Start End GO Terms
AF-A0A3D0WEN4-F1-model_v4 RNA methyltransferase 0.9638 4 190 GO:0070041
GO:0070475
AF-K9DHW4-F1-model_v4 23S rRNA (Uracil-5-)-methyltransferase RumA 0.9544 4 377 GO:0070041
GO:0070475
AF-A0A520HFJ8-F1-model_v4 Class I SAM-dependent RNA methyltransferase 0.952 4 250 GO:0070041
GO:0070475
AF-A0A7X1FTQ2-F1-model_v4 Class I SAM-dependent RNA methyltransferase 0.9483 1 378 GO:0070041
GO:0070475
AF-A0A2P7QN43-F1-model_v4 RNA methyltransferase 0.9476 3 376 GO:0070041
GO:0070475

Map