F240870

General Info

Members Datasets Scaffolds Average Seq Length
163 130 145 352

Family's Representative Sequence

Representative Sequence 3300005336|Ga0070680_100000334|Ga0070680_1000003344
Length 372
Sequence MLSSATLRGMPAILLRKKYDRVDMHVLSIVGARPQFVKAAVVSKAMAERGIRESLVHTGQHHDSQMSDVFFRELNIPPPTHNLGIHGGGHGDMTGRMLSGIERIMLDEEPDWVLVYGDTNSTLAGALGAAKLHIPLAHVEAGLRSFNRRMPEEINRVLTDHVSTLLLCPTHAAVINLKSEGIVKGVHMVGDVMMDATIAGTKIAKAQSNILQTLGLAEAGYSLATIHRAENTDNPERLAEVMTYLERRAKDGRPIVLPLHPRTKGALMKNDIRLSGVRVIDPVGYLDMQRLLSGSVEVFTDSGGLQKEAYFHRKPCTTLRDETEWLETVQAGWNRLWKGDGYAPRHEIEEYGGGNAAARVATLLAEAAPHSK

Samples

Sample ID Description Type Environment
1 2510917020 Caulobacter sp. AP07 Isolate Rhizosphere
2 2513237137 Bradyrhizobium elkanii USDA 94 Isolate Nodule
3 2524023228 Bradyrhizobium sp. Th.b2 Isolate Nodule
4 2643221583 Caulobacter sp. Root655 Isolate Unclassified
5 2643221651 Afipia sp. Root123D2 Isolate Unclassified
6 2643221734 Bosea sp. Root670 Isolate Unclassified
7 2884298095 Microvirga thermotolerans HR1 Isolate Rhizosphere
8 2904699407
9 2906635258 Bradyrhizobium sp. USDA 3458 Isolate Unclassified
10 2935630451 Bradyrhizobium sp. I1.14.4 Isolate Nodule
11 2935992306 Bradyrhizobium sp. I1.7.5 Isolate Nodule
12 2941507105 Bradyrhizobium sp. i1.12.3 Isolate Nodule
13 2941515067 Bradyrhizobium sp. i1.14.1 Isolate Nodule
14 2941523033 Bradyrhizobium sp. i1.8.4 Isolate Nodule
15 3300003187 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB Metagenome Endosphere
16 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
17 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
18 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
19 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
20 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
21 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
22 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
23 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
24 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
25 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
28 3300005983 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S2T1R1 Metagenome Rhizosphere
29 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
30 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
31 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
32 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
33 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
34 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
35 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
36 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
37 3300014497 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-129_1 metaG Metagenome Rhizosphere
38 3300021320 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 Metagenome Nodule
39 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
40 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025261 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Cvi_mCL (SPAdes) (version 2) Metagenome Endosphere
42 3300025272 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
43 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
44 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
45 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
46 3300025900 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025915 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
58 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
59 3300028786 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 23_EM Metagenome Unclassified
60 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
61 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
62 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
63 3300031507 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 10_EM Metagenome Unclassified
64 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
65 3300035117 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_1 Metagenome Rhizosphere
66 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
67 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
68 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
69 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
70 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
71 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
72 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
73 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
74 3300038705 Coralloid root microbial communities from Raymundo Flores, Chiapas, Mexico - RF1-T1 Metagenome Unclassified
75 3300039145 Coralloid root microbial communities from Jiquipilas, Chiapas, Mexico - JP6-T1 Metagenome Unclassified
76 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
77 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
78 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
79 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
80 3300041456 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_5 MetaG Metagenome Rhizoplane
81 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
82 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
83 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
84 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
85 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
86 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
87 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
88 3300046459 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL3_88_32 rhizosphere Metagenome Rhizosphere
89 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
90 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
91 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
92 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
93 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
94 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
95 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
96 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
97 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
98 3300046794 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co1_27_3 rhizosphere Metagenome Rhizosphere
99 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
100 3300046810 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co2_51_17 rhizosphere Metagenome Rhizosphere
101 3300047446 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 rhizosphere Metagenome Rhizosphere
102 3300047469 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 rhizosphere Metagenome Rhizosphere
103 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
104 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
105 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
106 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
108 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
109 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
110 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
111 3300049688 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E14_A_4_drought Metagenome Rhizosphere
112 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
113 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
114 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
115 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
116 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
117 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
118 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
119 3300053084 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL2_65_22 rhizosphere Metagenome Rhizosphere
120 3300053085 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere Metagenome Rhizosphere
121 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
122 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
123 3300053150 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 endosphere Metagenome Endosphere
124 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
125 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
126 3300053178 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 endosphere Metagenome Endosphere
127 8006933436 Bradyrhizobium septentrionale 7(2017) Isolate Unclassified
128 8006964411 Bradyrhizobium sp. sBnM-33 Isolate Nodule
129 8006973647 Bradyrhizobium septentrionale 162S2 Isolate Nodule
130 8056967851 Bradyrhizobium zhengyangense WYCCWR 12678 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 89.51
Metatranscriptomes 0
Isolates 10.49

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 8.59
Nodule 6.75
Rhizoplane 1.23
Rhizosphere 73.62
Stem 0
Stem Tuber 0
Unclassified 9.82

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25151J46595_10000015 3300003187 Bacteria 250420
2 rootH1_10037865 3300003323 Bacteria 12616
3 Ga0070658_10015562 3300005327 Bacteria 6083
4 Ga0070680_100000334 3300005336 Bacteria 31520
5 Ga0070680_100000347 3300005336 Bacteria 31151
6 Ga0070680_100018773 3300005336 Bacteria 5472
7 Ga0070660_100133221 3300005339 Unclassified 1990
8 Ga0070691_10011215 3300005341 Unclassified 4089
9 Ga0070709_10024156 3300005434 Bacteria 3575
10 Ga0070714_100000549 3300005435 Bacteria 27086
11 Ga0070714_100077242 3300005435 Bacteria 2892
12 Ga0070714_100263453 3300005435 Bacteria 1597
13 Ga0070714_100301818 3300005435 Bacteria 1493
14 Ga0070711_100059927 3300005439 Bacteria 2644
15 Ga0070681_10019873 3300005458 Bacteria 6729
16 Ga0070681_10025227 3300005458 Bacteria 5979
17 Ga0070681_10032903 3300005458 Bacteria 5205
18 Ga0070681_10038028 3300005458 Unclassified 4825
19 Ga0070681_10062599 3300005458 Bacteria 3694
20 Ga0070679_100000481 3300005530 Bacteria 34177
21 Ga0070679_100002778 3300005530 Bacteria 15914
22 Ga0070679_100155684 3300005530 Unclassified 2260
23 Ga0068856_100067240 3300005614 Bacteria 3541
24 Ga0068860_100000724 3300005843 Bacteria 37558
25 Ga0081540_1007231 3300005983 Bacteria 7960
26 Ga0081539_10026870 3300005985 Bacteria 3658
27 Ga0081539_10034716 3300005985 Bacteria 3043
28 Ga0070717_10143140 3300006028 Bacteria 2064
29 Ga0070717_10208297 3300006028 Bacteria 1715
30 Ga0070712_100127532 3300006175 Bacteria 1924
31 Ga0068871_100262213 3300006358 Bacteria 1508
32 Ga0075430_100013591 3300006846 Bacteria 6937
33 Ga0075436_100084816 3300006914 Bacteria 2198
34 Ga0105247_10010879 3300009101 Bacteria 5497
35 Ga0099796_10031277 3300010159 Bacteria 1734
36 Ga0182008_10050863 3300014497 Archaea 2056
37 Ga0214544_1018275 3300021320 Bacteria 5897
38 Ga0213875_10001021 3300021388 Bacteria 19851
39 Ga0209148_1000776 3300025254 Bacteria 23878
40 Ga0209233_1010251 3300025261 Bacteria 2818
41 Ga0209455_1001007 3300025272 Bacteria 14212
42 Ga0209676_1014326 3300025292 Bacteria 2987
43 Ga0209025_1000010 3300025294 Bacteria 986612
44 Ga0209256_1000494 3300025299 Bacteria 57987
45 Ga0207710_10006102 3300025900 Bacteria 5162
46 Ga0207699_10001963 3300025906 Bacteria 9712
47 Ga0207705_10000092 3300025909 Bacteria 109488
48 Ga0207707_10009785 3300025912 Bacteria 8315
49 Ga0207707_10016608 3300025912 Bacteria 6417
50 Ga0207707_10166489 3300025912 Bacteria 1926
51 Ga0207707_10235858 3300025912 Bacteria 1591
52 Ga0207707_10275984 3300025912 Unclassified 1456
53 Ga0207693_10067033 3300025915 Bacteria 2810
54 Ga0207660_10000195 3300025917 Bacteria 38741
55 Ga0207660_10000904 3300025917 Bacteria 19519
56 Ga0207660_10017484 3300025917 Unclassified 4765
57 Ga0207652_10000782 3300025921 Bacteria 30446
58 Ga0207652_10002688 3300025921 Bacteria 14911
59 Ga0207652_10006897 3300025921 Bacteria 9151
60 Ga0207652_10034787 3300025921 Unclassified 4248
61 Ga0207700_10012750 3300025928 Bacteria 5435
62 Ga0207664_10001089 3300025929 Bacteria 18111
63 Ga0207664_10289986 3300025929 Bacteria 1438
64 Ga0207665_10028368 3300025939 Bacteria 3697
65 Ga0207702_10028188 3300026078 Bacteria 4666
66 Ga0207648_10273307 3300026089 Bacteria 1510
67 Ga0268264_10000096 3300028381 Bacteria 230188
68 Ga0307517_10006790 3300028786 Bacteria 16836
69 Ga0265320_10018544 3300031240 Bacteria 3828
70 Ga0265340_10047072 3300031247 Bacteria 2102
71 Ga0265339_10001034 3300031249 Bacteria 21208
72 Ga0307509_10174975 3300031507 Bacteria 2020
73 Ga0373945_0024494 3300035116 Bacteria 2092
74 Ga0373953_0048632 3300035117 Bacteria 1709
75 Ga0373956_0027681 3300035119 Bacteria 2463
76 Ga0373943_0017922 3300035170 Bacteria 3247
77 Ga0373947_0074875 3300035725 Bacteria 2084
78 Ga0395899_0003437 3300037312 Bacteria 12559
79 Ga0395900_0010646 3300037418 Bacteria 9406
80 Ga0395898_0005398 3300037466 Bacteria 13814
81 Ga0436364_0206572 3300037853 Bacteria 30473
82 Ga0395901_0064845 3300038443 Bacteria 3802
83 Ga0237819_00802 3300038705 Bacteria 9990
84 Ga0237816_03390 3300039145 Unclassified 1168
85 Ga0436365_1431321 3300039437 Bacteria 1641
86 Ga0436360_0580030 3300039438 Bacteria 2886
87 Ga0436363_0161590 3300039450 Unclassified 1911
88 Ga0436362_0183827 3300039453 Bacteria 2583
89 Ga0451795_1388952 3300041456 Bacteria 9091
90 Ga0466966_0026427 3300044684 Bacteria 3789
91 Ga0466966_0052453 3300044684 Bacteria 2590
92 Ga0466957_0020174 3300044842 Bacteria 3922
93 Ga0466959_0216091 3300045049 Bacteria 1331
94 Ga0466958_0001050 3300045836 Bacteria 12645
95 Ga0466958_0024729 3300045836 Bacteria 3535
96 Ga0466958_0035230 3300045836 Bacteria 2990
97 Ga0466958_0044586 3300045836 Bacteria 2673
98 Ga0466967_0000964 3300045976 Bacteria 15623
99 Ga0466967_0253178 3300045976 Bacteria 1683
100 Ga0495627_000600 3300046453 Bacteria 28749
101 Ga0495592_0201104 3300046454 Bacteria 1345
102 Ga0495629_0143008 3300046459 Bacteria 1664
103 Ga0495629_0183413 3300046459 Unclassified 1450
104 Ga0495638_0017442 3300046460 Bacteria 4785
105 Ga0495653_0213382 3300046463 Bacteria 1302
106 Ga0495618_0153979 3300046514 Bacteria 1468
107 Ga0495643_0003123 3300046522 Bacteria 12372
108 Ga0495648_0099841 3300046524 Bacteria 1605
109 Ga0495652_0267574 3300046529 Bacteria 1258
110 Ga0495640_0054768 3300046533 Unclassified 2731
111 Ga0495640_0056972 3300046533 Bacteria 2668
112 Ga0495667_0029053 3300046559 Bacteria 3721
113 Ga0495635_0066494 3300046663 Bacteria 2472
114 Ga0495589_0054543 3300046794 Bacteria 1971
115 Ga0495600_0059616 3300046809 Bacteria 2493
116 Ga0495660_0052477 3300046810 Bacteria 2215
117 Ga0495679_006899 3300047446 Bacteria 4817
118 Ga0495673_0000377 3300047469 Bacteria 53346
119 Ga0496112_0131176 3300048915 Archaea 2477
120 Ga0496121_0003363 3300048924 Bacteria 22938
121 Ga0501033_0023123 3300049570 Bacteria 4686
122 Ga0501033_0261217 3300049570 Bacteria 1225
123 Ga0501034_0024221 3300049571 Bacteria 6174
124 Ga0501037_0075953 3300049573 Bacteria 2440
125 Ga0501038_0002478 3300049574 Bacteria 17175
126 Ga0501038_0128657 3300049574 Bacteria 2082
127 Ga0501043_0010697 3300049579 Bacteria 7189
128 Ga0501070_0035173 3300049586 Bacteria 4187
129 Ga0501259_000005 3300049688 Bacteria 33928
130 Ga0501081_0294913 3300049743 Bacteria 1189
131 Ga0501083_0013633 3300049744 Bacteria 5683
132 Ga0501044_0027913 3300049823 Bacteria 5958
133 nmdc:mga05p37_568083_c1 3300050507 Bacteria 1287
134 nmdc:mga06r32_187723_c1 3300050510 Bacteria 2054
135 Ga0495601_0008380 3300053077 Bacteria 6106
136 Ga0495601_0015150 3300053077 Bacteria 4658
137 Ga0500635_0032528 3300053080 Bacteria 1696
138 Ga0495595_0142458 3300053084 Bacteria 1176
139 Ga0495619_0018268 3300053085 Bacteria 4450
140 Ga0500618_000135 3300053125 Bacteria 62022
141 Ga0500559_0000215 3300053136 Bacteria 46339
142 Ga0500603_000435 3300053150 Bacteria 10843
143 Ga0500616_0021311 3300053153 Bacteria 3637
144 Ga0500636_0028976 3300053177 Bacteria 3269
145 Ga0500637_0000630 3300053178 Bacteria 13959

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300046514 Ga0495618_0153979 Ga0495618_0153979_12_899 274
2 3300039145 Ga0237816_03390 Ga0237816_03390_36_953 302
3 3300046463 Ga0495653_0213382 Ga0495653_0213382_39_965 302
4 3300046794 Ga0495589_0054543 Ga0495589_0054543_14_967 302
5 3300049743 Ga0501081_0294913 Ga0501081_0294913_13_927 302
6 3300050507 nmdc:mga05p37_568083_c1 nmdc:mga05p37_568083_c1_350_1261 302
7 3300046810 Ga0495660_0052477 Ga0495660_0052477_342_1427 322
8 3300049688 Ga0501259_000005 Ga0501259_000005_6834_7859 326
9 3300053084 Ga0495595_0142458 Ga0495595_0142458_157_1155 326
10 3300031240 Ga0265320_10018544 Ga0265320_100185443 329
11 3300045836 Ga0466958_0024729 Ga0466958_0024729_463_1533 333
12 3300046460 Ga0495638_0017442 Ga0495638_0017442_1466_2551 333
13 3300026089 Ga0207648_10273307 Ga0207648_102733072 336
14 3300041456 Ga0451795_1388952 Ga0451795_1388952_4492_5568 337
15 3300045049 Ga0466959_0216091 Ga0466959_0216091_10_1068 337
16 3300028786 Ga0307517_10006790 Ga0307517_100067906 339
17 3300053136 Ga0500559_0000215 Ga0500559_0000215_15508_16575 339
18 3300039437 Ga0436365_1431321 Ga0436365_1431321_327_1436 340
19 3300049570 Ga0501033_0023123 Ga0501033_0023123_1502_2584 340
20 3300005435 Ga0070714_100301818 Ga0070714_1003018182 341
21 3300044684 Ga0466966_0026427 Ga0466966_0026427_231_1301 341
22 3300045836 Ga0466958_0035230 Ga0466958_0035230_1490_2560 341
23 3300045976 Ga0466967_0253178 Ga0466967_0253178_446_1516 341
24 iso_pu_bacteria 2513237137 2513862255 341
25 iso_pu_bacteria 2643221734 2644736330 341
26 3300005435 Ga0070714_100000549 Ga0070714_10000054915 342
27 3300006028 Ga0070717_10208297 Ga0070717_102082972 342
28 3300025929 Ga0207664_10001089 Ga0207664_1000108911 342
29 3300037312 Ga0395899_0003437 Ga0395899_0003437_4828_5901 342
30 3300037418 Ga0395900_0010646 Ga0395900_0010646_5845_6918 342
31 3300037466 Ga0395898_0005398 Ga0395898_0005398_3481_4554 342
32 3300038443 Ga0395901_0064845 Ga0395901_0064845_851_1924 342
33 3300044684 Ga0466966_0052453 Ga0466966_0052453_1137_2210 342
34 3300044842 Ga0466957_0020174 Ga0466957_0020174_1063_2136 342
35 3300045836 Ga0466958_0001050 Ga0466958_0001050_77_1150 342
36 3300045836 Ga0466958_0044586 Ga0466958_0044586_1003_2076 342
37 3300045976 Ga0466967_0000964 Ga0466967_0000964_4778_5851 342
38 iso_pu_bacteria 2510917020 2511122502 342
39 iso_pu_bacteria 2524023228 2524535652 342
40 iso_pu_bacteria 2643221583 2643923229 342
41 iso_pu_bacteria 2643221651 2644287638 342
42 iso_pu_bacteria 2884298095 2884299467 342
43 iso_pu_bacteria 2904699407 2904705375 342
44 iso_pu_bacteria 2906635258 2906641434 342
45 iso_pu_bacteria 2935630451 2935635917 342
46 iso_pu_bacteria 2935992306 2936001687 342
47 iso_pu_bacteria 2941507105 2941512548 342
48 iso_pu_bacteria 2941515067 2941520249 342
49 iso_pu_bacteria 2941523033 2941528355 342
50 iso_pu_bacteria 8006933436 8006942982 342
51 iso_pu_bacteria 8006964411 8006969813 342
52 iso_pu_bacteria 8006973647 8006982702 342
53 iso_pu_bacteria 8056967851 8056969050 342
54 3300003323 rootH1_10037865 rootH1_100378656 343
55 3300005983 Ga0081540_1007231 Ga0081540_10072312 343
56 3300006175 Ga0070712_100127532 Ga0070712_1001275322 343
57 3300005327 Ga0070658_10015562 Ga0070658_100155625 344
58 3300005336 Ga0070680_100000347 Ga0070680_10000034722 344
59 3300005336 Ga0070680_100018773 Ga0070680_1000187733 344
60 3300005339 Ga0070660_100133221 Ga0070660_1001332212 344
61 3300005341 Ga0070691_10011215 Ga0070691_100112153 344
62 3300005434 Ga0070709_10024156 Ga0070709_100241564 344
63 3300005435 Ga0070714_100077242 Ga0070714_1000772423 344
64 3300005439 Ga0070711_100059927 Ga0070711_1000599273 344
65 3300005458 Ga0070681_10025227 Ga0070681_100252272 344
66 3300005458 Ga0070681_10032903 Ga0070681_100329033 344
67 3300005458 Ga0070681_10038028 Ga0070681_100380283 344
68 3300005530 Ga0070679_100002778 Ga0070679_10000277812 344
69 3300005530 Ga0070679_100155684 Ga0070679_1001556842 344
70 3300005614 Ga0068856_100067240 Ga0068856_1000672404 344
71 3300005985 Ga0081539_10026870 Ga0081539_100268703 344
72 3300006028 Ga0070717_10143140 Ga0070717_101431402 344
73 3300006914 Ga0075436_100084816 Ga0075436_1000848162 344
74 3300010159 Ga0099796_10031277 Ga0099796_100312772 344
75 3300014497 Ga0182008_10050863 Ga0182008_100508632 344
76 3300025906 Ga0207699_10001963 Ga0207699_100019635 344
77 3300025909 Ga0207705_10000092 Ga0207705_1000009215 344
78 3300025912 Ga0207707_10009785 Ga0207707_100097853 344
79 3300025912 Ga0207707_10235858 Ga0207707_102358581 344
80 3300025912 Ga0207707_10275984 Ga0207707_102759841 344
81 3300025915 Ga0207693_10067033 Ga0207693_100670332 344
82 3300025917 Ga0207660_10000195 Ga0207660_100001954 344
83 3300025917 Ga0207660_10017484 Ga0207660_100174843 344
84 3300025921 Ga0207652_10000782 Ga0207652_1000078217 344
85 3300025921 Ga0207652_10002688 Ga0207652_1000268810 344
86 3300025921 Ga0207652_10034787 Ga0207652_100347873 344
87 3300025928 Ga0207700_10012750 Ga0207700_100127505 344
88 3300025939 Ga0207665_10028368 Ga0207665_100283682 344
89 3300026078 Ga0207702_10028188 Ga0207702_100281883 344
90 3300035116 Ga0373945_0024494 Ga0373945_0024494_978_2057 344
91 3300035117 Ga0373953_0048632 Ga0373953_0048632_567_1673 344
92 3300035119 Ga0373956_0027681 Ga0373956_0027681_746_1852 344
93 3300035170 Ga0373943_0017922 Ga0373943_0017922_267_1346 344
94 3300035725 Ga0373947_0074875 Ga0373947_0074875_132_1211 344
95 3300039438 Ga0436360_0580030 Ga0436360_0580030_1283_2341 344
96 3300039450 Ga0436363_0161590 Ga0436363_0161590_705_1763 344
97 3300039453 Ga0436362_0183827 Ga0436362_0183827_589_1647 344
98 3300046459 Ga0495629_0183413 Ga0495629_0183413_127_1218 344
99 3300046522 Ga0495643_0003123 Ga0495643_0003123_2150_3184 344
100 3300046559 Ga0495667_0029053 Ga0495667_0029053_664_1770 344
101 3300046663 Ga0495635_0066494 Ga0495635_0066494_1140_2246 344
102 3300046809 Ga0495600_0059616 Ga0495600_0059616_456_1562 344
103 3300048915 Ga0496112_0131176 Ga0496112_0131176_1295_2374 344
104 3300048924 Ga0496121_0003363 Ga0496121_0003363_8061_9107 344
105 3300053077 Ga0495601_0015150 Ga0495601_0015150_3218_4324 344
106 3300053085 Ga0495619_0018268 Ga0495619_0018268_354_1460 344
107 3300053153 Ga0500616_0021311 Ga0500616_0021311_1007_2047 344
108 3300003187 JGI25151J46595_10000015 JGI25151J46595_10000015150 345
109 3300005336 Ga0070680_100000334 Ga0070680_1000003344 345
110 3300005435 Ga0070714_100263453 Ga0070714_1002634532 345
111 3300005458 Ga0070681_10019873 Ga0070681_100198731 345
112 3300005458 Ga0070681_10062599 Ga0070681_100625992 345
113 3300005530 Ga0070679_100000481 Ga0070679_10000048127 345
114 3300005843 Ga0068860_100000724 Ga0068860_10000072427 345
115 3300005985 Ga0081539_10034716 Ga0081539_100347162 345
116 3300006358 Ga0068871_100262213 Ga0068871_1002622132 345
117 3300006846 Ga0075430_100013591 Ga0075430_1000135913 345
118 3300009101 Ga0105247_10010879 Ga0105247_100108794 345
119 3300021320 Ga0214544_1018275 Ga0214544_10182754 345
120 3300021388 Ga0213875_10001021 Ga0213875_100010215 345
121 3300025254 Ga0209148_1000776 Ga0209148_10007764 345
122 3300025261 Ga0209233_1010251 Ga0209233_10102512 345
123 3300025272 Ga0209455_1001007 Ga0209455_10010073 345
124 3300025292 Ga0209676_1014326 Ga0209676_10143261 345
125 3300025294 Ga0209025_1000010 Ga0209025_1000010711 345
126 3300025299 Ga0209256_1000494 Ga0209256_100049410 345
127 3300025900 Ga0207710_10006102 Ga0207710_100061022 345
128 3300025912 Ga0207707_10016608 Ga0207707_100166084 345
129 3300025912 Ga0207707_10166489 Ga0207707_101664892 345
130 3300025917 Ga0207660_10000904 Ga0207660_100009044 345
131 3300025921 Ga0207652_10006897 Ga0207652_100068974 345
132 3300025929 Ga0207664_10289986 Ga0207664_102899862 345
133 3300028381 Ga0268264_10000096 Ga0268264_1000009641 345
134 3300031247 Ga0265340_10047072 Ga0265340_100470722 345
135 3300031249 Ga0265339_10001034 Ga0265339_100010346 345
136 3300031507 Ga0307509_10174975 Ga0307509_101749752 345
137 3300037853 Ga0436364_0206572 Ga0436364_0206572_530_1579 345
138 3300038705 Ga0237819_00802 Ga0237819_00802_8148_9215 345
139 3300046453 Ga0495627_000600 Ga0495627_000600_13928_15016 345
140 3300046454 Ga0495592_0201104 Ga0495592_0201104_170_1225 345
141 3300046459 Ga0495629_0143008 Ga0495629_0143008_325_1380 345
142 3300046524 Ga0495648_0099841 Ga0495648_0099841_313_1395 345
143 3300046529 Ga0495652_0267574 Ga0495652_0267574_53_1108 345
144 3300046533 Ga0495640_0054768 Ga0495640_0054768_84_1139 345
145 3300046533 Ga0495640_0056972 Ga0495640_0056972_1538_2584 345
146 3300047446 Ga0495679_006899 Ga0495679_006899_2331_3416 345
147 3300047469 Ga0495673_0000377 Ga0495673_0000377_36825_37913 345
148 3300049570 Ga0501033_0261217 Ga0501033_0261217_57_1100 345
149 3300049571 Ga0501034_0024221 Ga0501034_0024221_1801_2844 345
150 3300049573 Ga0501037_0075953 Ga0501037_0075953_1174_2211 345
151 3300049574 Ga0501038_0002478 Ga0501038_0002478_10989_12032 345
152 3300049574 Ga0501038_0128657 Ga0501038_0128657_1019_2062 345
153 3300049579 Ga0501043_0010697 Ga0501043_0010697_4639_5682 345
154 3300049586 Ga0501070_0035173 Ga0501070_0035173_2507_3562 345
155 3300049744 Ga0501083_0013633 Ga0501083_0013633_3438_4493 345
156 3300049823 Ga0501044_0027913 Ga0501044_0027913_4875_5918 345
157 3300050510 nmdc:mga06r32_187723_c1 nmdc:mga06r32_187723_c1_541_1581 345
158 3300053077 Ga0495601_0008380 Ga0495601_0008380_4370_5416 345
159 3300053080 Ga0500635_0032528 Ga0500635_0032528_102_1157 345
160 3300053125 Ga0500618_000135 Ga0500618_000135_15916_17001 345
161 3300053150 Ga0500603_000435 Ga0500603_000435_187_1242 345
162 3300053177 Ga0500636_0028976 Ga0500636_0028976_2024_3079 345
163 3300053178 Ga0500637_0000630 Ga0500637_0000630_2283_3338 345

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02350

Epimerase_2

UDP-N-acetylglucosamine 2-epimerase

44

365

0.95

Structural Annotation

Top 5 Hits

ID Description Score Start End
8sy0-assembly1.cif.gz_A x-ray crystal structure of udp- 2,3-diacetamido-2,3-dideoxy-glucuronic acid-2-epimerase from thermus thermophilus strain hb27 in complex with its product udp-2,3-diacetamido-2,3-dideoxy-d-mannuronic acid at ph 9 0.9491 1 342
8sye-assembly1.cif.gz_A x-ray crystal structure of udp-2,3-diacetamido-2,3-dideoxy-glucuronic acid-2-epimerase from thermus thermophilus strain hb27, d98n variant in the presence of udp-2,3-diacetamido-2,3-dideoxy-glucuronic acid and udp at ph 6 0.9436 1 343
8sy0-assembly1.cif.gz_A x-ray crystal structure of udp- 2,3-diacetamido-2,3-dideoxy-glucuronic acid-2-epimerase from thermus thermophilus strain hb27 in complex with its product udp-2,3-diacetamido-2,3-dideoxy-d-mannuronic acid at ph 9 0.9383 1 342
8sye-assembly1.cif.gz_A x-ray crystal structure of udp-2,3-diacetamido-2,3-dideoxy-glucuronic acid-2-epimerase from thermus thermophilus strain hb27, d98n variant in the presence of udp-2,3-diacetamido-2,3-dideoxy-glucuronic acid and udp at ph 6 0.9357 1 343
8sxy-assembly1.cif.gz_B x-ray crystal structure of udp- 2,3-diacetamido-2,3-dideoxy-glucuronic acid-2-epimerase from thermus thermophilus strain hb27 in complex with its product udp-2,3-diacetamido-2,3-dideoxy-d-mannuronic acid at ph 5 0.9254 2 345
ID Description Score Start End Superfamily
af_Q58899_2_184_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9784 4 183 3.40.50.2000
af_Q58899_2_184_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9574 4 183 3.40.50.2000
af_P27828_2_186_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9328 4 183 3.40.50.2000
af_Q2G1K2_188_329_3.40.50.2000 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.9195 189 311 3.40.50.2000
4hwgA01 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Glycogen Phosphorylase B; 0.916 1 187 3.40.50.2000
ID Description Score Start End GO Terms
AF-X1EJ21-F1-model_v4 UDP-N-acetylglucosamine 2-epimerase domain-containing protein 1.001 76 158 GO:0008761
AF-A0A7K4DCU3-F1-model_v4 UDP-N-acetyl glucosamine 2-epimerase 0.9891 3 141 GO:0008761
AF-A0A2W6DVE6-F1-model_v4 UDP-N-acetylglucosamine 2-epimerase (Non-hydrolyzing) 0.988 3 123 GO:0008761
AF-A0A660QRC3-F1-model_v4 UDP-N-acetylglucosamine 2-epimerase (Non-hydrolyzing) 0.9861 3 134 GO:0008761
AF-A0A7X6Z647-F1-model_v4 UDP-N-acetylglucosamine 2-epimerase (Non-hydrolyzing) 0.9823 1 181 GO:0008761

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pLDDT pTM Quality
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Predicted Structure (AlphaFold2)

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