F239968
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 162 | 127 | 156 | 308 |
Family's Representative Sequence
| Representative Sequence | 3300044765|Ga0466970_0007080|Ga0466970_0007080_2507_3616 |
| Length | 356 |
| Sequence | MRKALIRTLVELAETDPRVLFLTADLGYTVVEPFAERFPDRFFNVGASEQNMLAVATGLAEGGFIPYVYSIAPFSTLRPYEFIRNGPVLQNLPVRIIGVGGGFEYAPAGPTHYALEDVGALRMLPGLKVAVPADFRQCRNALLAWHAVPGPAYFRLGKDEVNAIPNLEGRFEEGRLQVVRAGGEVLFLALGPAVNLALKAAEALSARGTESTVAVVASVSPAPVEDLRSLLPHFPCAVTVEAHYAVGGLGSLVCEVAAGEGIPCRILRRGVEGSPAGEQGDAEFMLRKHGLSPEALAETALAFPDRAPVPTGDWGAAPASHVIPVTDHPGIPARGSSGPSAIPAPGAGEAVTGRQP |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 2856349417 | Mesorhizobium sp. M4A.F.Ca.ET.090.04.2.1 | Isolate | Nodule |
| 2 | 2881155292 | Mesorhizobium sp. M4B.F.Ca.ET.058.02.1.1 | Isolate | Nodule |
| 3 | 2885342637 | Mesorhizobium sp. M4A.F.Ca.ET.050.02.1.1 | Isolate | Nodule |
| 4 | 2961127735 | Mesorhizobium sp. M4A.F.Ca.ET.029.04.2.1 | Isolate | Nodule |
| 5 | 3000135777 | Unclassified bacterium M00.F.Ca.ET.205.01.1.1 | Isolate | Unclassified |
| 6 | 3300005293 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) | Metagenome | Rhizosphere |
| 7 | 3300005330 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG | Metagenome | Rhizosphere |
| 8 | 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Metagenome | Rhizosphere |
| 9 | 3300005334 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 | Metagenome | Rhizosphere |
| 10 | 3300005340 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG | Metagenome | Rhizosphere |
| 11 | 3300005345 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG | Metagenome | Rhizosphere |
| 12 | 3300005353 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG | Metagenome | Rhizosphere |
| 13 | 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Metagenome | Rhizosphere |
| 14 | 3300005364 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG | Metagenome | Rhizosphere |
| 15 | 3300005365 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG | Metagenome | Rhizosphere |
| 16 | 3300005438 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG | Metagenome | Rhizosphere |
| 17 | 3300005444 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG | Metagenome | Rhizosphere |
| 18 | 3300005445 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG | Metagenome | Rhizosphere |
| 19 | 3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Metagenome | Rhizosphere |
| 20 | 3300005471 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG | Metagenome | Rhizosphere |
| 21 | 3300005518 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG | Metagenome | Rhizosphere |
| 22 | 3300005536 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG | Metagenome | Rhizosphere |
| 23 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 24 | 3300005544 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG | Metagenome | Rhizosphere |
| 25 | 3300005546 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG | Metagenome | Rhizosphere |
| 26 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 27 | 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Metagenome | Rhizosphere |
| 28 | 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Metagenome | Rhizosphere |
| 29 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 30 | 3300005985 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 31 | 3300006038 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 | Metagenome | Endosphere |
| 32 | 3300006048 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 | Metagenome | Endosphere |
| 33 | 3300006178 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 | Metagenome | Endosphere |
| 34 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 35 | 3300006847 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Metagenome | Rhizosphere |
| 36 | 3300006880 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Metagenome | Rhizosphere |
| 37 | 3300006914 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 | Metagenome | Rhizosphere |
| 38 | 3300006931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 39 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 40 | 3300009147 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 41 | 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Metagenome | Rhizosphere |
| 42 | 3300009174 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG | Metagenome | Rhizosphere |
| 43 | 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Metagenome | Rhizosphere |
| 44 | 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Metagenome | Rhizosphere |
| 45 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 46 | 3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Metagenome | Rhizosphere |
| 47 | 3300014745 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG | Metagenome | Rhizosphere |
| 48 | 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Metagenome | Rhizosphere |
| 49 | 3300021388 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 | Metagenome | Unclassified |
| 50 | 3300025910 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 51 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 52 | 3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 53 | 3300025920 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 54 | 3300025923 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 55 | 3300025925 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 56 | 3300025926 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 57 | 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 58 | 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 59 | 3300025935 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 60 | 3300025936 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 61 | 3300025938 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 62 | 3300025942 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 63 | 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 64 | 3300025972 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 65 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 66 | 3300026041 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 67 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 68 | 3300027907 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) | Metagenome | Rhizosphere |
| 69 | 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 70 | 3300028573 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG | Metagenome | Rhizosphere |
| 71 | 3300028577 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG | Metagenome | Rhizosphere |
| 72 | 3300029957 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG | Metagenome | Rhizosphere |
| 73 | 3300031241 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG | Metagenome | Rhizosphere |
| 74 | 3300031249 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG | Metagenome | Rhizosphere |
| 75 | 3300031548 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 | Metagenome | Rhizosphere |
| 76 | 3300031595 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG | Metagenome | Rhizosphere |
| 77 | 3300031711 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG | Metagenome | Rhizosphere |
| 78 | 3300031731 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 | Metagenome | Rhizosphere |
| 79 | 3300031903 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 | Metagenome | Rhizosphere |
| 80 | 3300032002 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 | Metagenome | Rhizosphere |
| 81 | 3300032126 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 | Metagenome | Rhizosphere |
| 82 | 3300035083 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 | Metagenome | Rhizosphere |
| 83 | 3300035086 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_4 | Metagenome | Rhizosphere |
| 84 | 3300035111 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_11 | Metagenome | Rhizosphere |
| 85 | 3300035118 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 | Metagenome | Rhizosphere |
| 86 | 3300035170 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 | Metagenome | Rhizosphere |
| 87 | 3300035410 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_12 | Metagenome | Rhizosphere |
| 88 | 3300035692 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 | Metagenome | Rhizosphere |
| 89 | 3300035695 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 | Metagenome | Rhizosphere |
| 90 | 3300035724 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 | Metagenome | Rhizosphere |
| 91 | 3300036401 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 92 | 3300037068 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 93 | 3300042876 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED | Metagenome | Rhizosphere |
| 94 | 3300044656 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R | Metagenome | Rhizosphere |
| 95 | 3300044658 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R | Metagenome | Rhizosphere |
| 96 | 3300044684 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R | Metagenome | Rhizosphere |
| 97 | 3300044693 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC2R | Metagenome | Rhizosphere |
| 98 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 99 | 3300044719 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R | Metagenome | Rhizosphere |
| 100 | 3300044765 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R | Metagenome | Rhizosphere |
| 101 | 3300044842 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R | Metagenome | Rhizosphere |
| 102 | 3300045049 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R | Metagenome | Rhizosphere |
| 103 | 3300045836 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R | Metagenome | Rhizosphere |
| 104 | 3300046455 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere | Metagenome | Rhizosphere |
| 105 | 3300046472 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere | Metagenome | Rhizosphere |
| 106 | 3300046499 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere | Metagenome | Rhizosphere |
| 107 | 3300048904 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled | Metagenome | Rhizoplane |
| 108 | 3300048909 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 | Metagenome | Rhizoplane |
| 109 | 3300048910 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3d N15 | Metagenome | Rhizoplane |
| 110 | 3300048917 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 | Metagenome | Rhizoplane |
| 111 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 112 | 3300049575 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 113 | 3300049580 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 114 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 115 | 3300050494 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation | Metagenome | Endosphere |
| 116 | 3300050507 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation | Metagenome | Rhizosphere |
| 117 | 3300050508 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation | Metagenome | Rhizosphere |
| 118 | 3300050509 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation | Metagenome | Rhizosphere |
| 119 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 120 | 3300050513 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation | Metagenome | Rhizosphere |
| 121 | 3300050515 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation | Metagenome | Rhizosphere |
| 122 | 3300050516 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation | Metagenome | Endosphere |
| 123 | 3300053085 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL3_72_12 rhizosphere | Metagenome | Rhizosphere |
| 124 | 3300053153 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere | Metagenome | Endosphere |
| 125 | 3300054114 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 | Metagenome | Rhizosphere |
| 126 | 3300061719 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 | Metagenome | Rhizosphere |
| 127 | 8004640170 | Mesorhizobium sp. GbtcB19 | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 96.3 |
| Metatranscriptomes | 0 |
| Isolates | 3.7 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 4.32 |
| Nodule | 2.47 |
| Rhizoplane | 3.7 |
| Rhizosphere | 87.65 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 1.85 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0065715_10131460 | 3300005293 | Bacteria | 2007 |
| 2 | Ga0065715_10188162 | 3300005293 | Bacteria | 1432 |
| 3 | Ga0070690_100043949 | 3300005330 | Unclassified | 2835 |
| 4 | Ga0070670_100393803 | 3300005331 | Bacteria | 1222 |
| 5 | Ga0068869_100105545 | 3300005334 | Bacteria | 2137 |
| 6 | Ga0070689_100011158 | 3300005340 | Bacteria | 6429 |
| 7 | Ga0070692_10222015 | 3300005345 | Bacteria | 1117 |
| 8 | Ga0070669_100047421 | 3300005353 | Bacteria | 3134 |
| 9 | Ga0070669_100173763 | 3300005353 | Unclassified | 1681 |
| 10 | Ga0070675_100025745 | 3300005354 | Unclassified | 4717 |
| 11 | Ga0070675_100112755 | 3300005354 | Bacteria | 2302 |
| 12 | Ga0070673_100026327 | 3300005364 | Bacteria | 4294 |
| 13 | Ga0070688_100018502 | 3300005365 | Bacteria | 4021 |
| 14 | Ga0070688_100037621 | 3300005365 | Bacteria | 2950 |
| 15 | Ga0070701_10024027 | 3300005438 | Bacteria | 2944 |
| 16 | Ga0070694_100195441 | 3300005444 | Bacteria | 1505 |
| 17 | Ga0070708_100172804 | 3300005445 | Unclassified | 2018 |
| 18 | Ga0070708_100287116 | 3300005445 | Bacteria | 1549 |
| 19 | Ga0070707_100086624 | 3300005468 | Unclassified | 3029 |
| 20 | Ga0070698_100020905 | 3300005471 | Bacteria | 6858 |
| 21 | Ga0070698_100132647 | 3300005471 | Unclassified | 2446 |
| 22 | Ga0070699_100008373 | 3300005518 | Bacteria | 8961 |
| 23 | Ga0070699_100050088 | 3300005518 | Bacteria | 3615 |
| 24 | Ga0070699_100187304 | 3300005518 | Bacteria | 1838 |
| 25 | Ga0070697_100067286 | 3300005536 | Bacteria | 2930 |
| 26 | Ga0068853_100129689 | 3300005539 | Bacteria | 2256 |
| 27 | Ga0070686_100008652 | 3300005544 | Bacteria | 5703 |
| 28 | Ga0070696_100144658 | 3300005546 | Bacteria | 1741 |
| 29 | Ga0068857_100461158 | 3300005577 | Bacteria | 1189 |
| 30 | Ga0068859_100026999 | 3300005617 | Bacteria | 5760 |
| 31 | Ga0068859_100176294 | 3300005617 | Bacteria | 2219 |
| 32 | Ga0068864_100010850 | 3300005618 | Bacteria | 7530 |
| 33 | Ga0068862_100071875 | 3300005844 | Bacteria | 2988 |
| 34 | Ga0068862_100499040 | 3300005844 | Bacteria | 1155 |
| 35 | Ga0081539_10013479 | 3300005985 | Bacteria | 6155 |
| 36 | Ga0075365_10128690 | 3300006038 | Bacteria | 1751 |
| 37 | Ga0075363_100009629 | 3300006048 | Bacteria | 4550 |
| 38 | Ga0075367_10000303 | 3300006178 | Bacteria | 17374 |
| 39 | Ga0075428_100050220 | 3300006844 | Unclassified | 4576 |
| 40 | Ga0075428_100224768 | 3300006844 | Bacteria | 2027 |
| 41 | Ga0075431_100429475 | 3300006847 | Bacteria | 1319 |
| 42 | Ga0075429_100044363 | 3300006880 | Bacteria | 3869 |
| 43 | Ga0075436_100170769 | 3300006914 | Bacteria | 1535 |
| 44 | Ga0097620_100026998 | 3300006931 | Bacteria | 5760 |
| 45 | Ga0097620_100176298 | 3300006931 | Bacteria | 2219 |
| 46 | Ga0111539_10004020 | 3300009094 | Bacteria | 19303 |
| 47 | Ga0111539_10154135 | 3300009094 | Bacteria | 2689 |
| 48 | Ga0111539_10756607 | 3300009094 | Bacteria | 1131 |
| 49 | Ga0114129_10011260 | 3300009147 | Bacteria | 12749 |
| 50 | Ga0105243_10108078 | 3300009148 | Bacteria | 2321 |
| 51 | Ga0105241_10560982 | 3300009174 | Bacteria | 1027 |
| 52 | Ga0105242_10277579 | 3300009176 | Bacteria | 1520 |
| 53 | Ga0105249_10109566 | 3300009553 | Bacteria | 2608 |
| 54 | Ga0105249_10128048 | 3300009553 | Unclassified | 2420 |
| 55 | Ga0157375_10156244 | 3300013308 | Bacteria | 2420 |
| 56 | Ga0157375_10390558 | 3300013308 | Bacteria | 1558 |
| 57 | Ga0157380_10441929 | 3300014326 | Bacteria | 1246 |
| 58 | Ga0157377_10041742 | 3300014745 | Bacteria | 2546 |
| 59 | Ga0157379_10018983 | 3300014968 | Bacteria | 6070 |
| 60 | Ga0213875_10006233 | 3300021388 | Bacteria | 6286 |
| 61 | Ga0207684_10258551 | 3300025910 | Bacteria | 1502 |
| 62 | Ga0207671_10018989 | 3300025914 | Bacteria | 5266 |
| 63 | Ga0207663_10277408 | 3300025916 | Unclassified | 1244 |
| 64 | Ga0207649_10146045 | 3300025920 | Unclassified | 1624 |
| 65 | Ga0207681_10151557 | 3300025923 | Bacteria | 1738 |
| 66 | Ga0207650_10025839 | 3300025925 | Bacteria | 4185 |
| 67 | Ga0207659_10000584 | 3300025926 | Bacteria | 21816 |
| 68 | Ga0207659_10066924 | 3300025926 | Bacteria | 2609 |
| 69 | Ga0207659_10353634 | 3300025926 | Bacteria | 1220 |
| 70 | Ga0207644_10396286 | 3300025931 | Unclassified | 1128 |
| 71 | Ga0207706_10180786 | 3300025933 | Bacteria | 1852 |
| 72 | Ga0207709_10147759 | 3300025935 | Bacteria | 1624 |
| 73 | Ga0207670_10117642 | 3300025936 | Bacteria | 1926 |
| 74 | Ga0207670_10186398 | 3300025936 | Bacteria | 1567 |
| 75 | Ga0207704_10147651 | 3300025938 | Bacteria | 1654 |
| 76 | Ga0207704_10184926 | 3300025938 | Unclassified | 1510 |
| 77 | Ga0207689_10093725 | 3300025942 | Unclassified | 2467 |
| 78 | Ga0207689_10111870 | 3300025942 | Bacteria | 2245 |
| 79 | Ga0207651_10016150 | 3300025960 | Unclassified | 4363 |
| 80 | Ga0207668_10307842 | 3300025972 | Bacteria | 1310 |
| 81 | Ga0207668_10377021 | 3300025972 | Bacteria | 1193 |
| 82 | Ga0207703_10445560 | 3300026035 | Bacteria | 1209 |
| 83 | Ga0207639_10273847 | 3300026041 | Bacteria | 1482 |
| 84 | Ga0207674_10019550 | 3300026116 | Bacteria | 7336 |
| 85 | Ga0207674_10477101 | 3300026116 | Bacteria | 1205 |
| 86 | Ga0207428_10088710 | 3300027907 | Bacteria | 2405 |
| 87 | Ga0268265_10037516 | 3300028380 | Bacteria | 3558 |
| 88 | Ga0268265_10371498 | 3300028380 | Bacteria | 1313 |
| 89 | Ga0265334_10076874 | 3300028573 | Bacteria | 1236 |
| 90 | Ga0265318_10027338 | 3300028577 | Bacteria | 2243 |
| 91 | Ga0265324_10000007 | 3300029957 | Bacteria | 264024 |
| 92 | Ga0265325_10007835 | 3300031241 | Bacteria | 6358 |
| 93 | Ga0265325_10098959 | 3300031241 | Bacteria | 1430 |
| 94 | Ga0265339_10004177 | 3300031249 | Bacteria | 9913 |
| 95 | Ga0307408_100308069 | 3300031548 | Unclassified | 1329 |
| 96 | Ga0265313_10002137 | 3300031595 | Bacteria | 17573 |
| 97 | Ga0265314_10109947 | 3300031711 | Bacteria | 1753 |
| 98 | Ga0307405_10040990 | 3300031731 | Bacteria | 2808 |
| 99 | Ga0307407_10041670 | 3300031903 | Unclassified | 2569 |
| 100 | Ga0307416_100029740 | 3300032002 | Bacteria | 4087 |
| 101 | Ga0307415_100059952 | 3300032126 | Bacteria | 2627 |
| 102 | Ga0373926_0017872 | 3300035083 | Bacteria | 2436 |
| 103 | Ga0373934_0021601 | 3300035086 | Unclassified | 2479 |
| 104 | Ga0373923_0012352 | 3300035111 | Bacteria | 3155 |
| 105 | Ga0373954_0118297 | 3300035118 | Unclassified | 1285 |
| 106 | Ga0373943_0008392 | 3300035170 | Bacteria | 4636 |
| 107 | Ga0373924_0029287 | 3300035410 | Unclassified | 2200 |
| 108 | Ga0373935_0016180 | 3300035692 | Bacteria | 4514 |
| 109 | Ga0373935_0070184 | 3300035692 | Bacteria | 2258 |
| 110 | Ga0373927_0019850 | 3300035695 | Bacteria | 4407 |
| 111 | Ga0373927_0143502 | 3300035695 | Bacteria | 1562 |
| 112 | Ga0373927_0145267 | 3300035695 | Unclassified | 1552 |
| 113 | Ga0373933_0043651 | 3300035724 | Unclassified | 2653 |
| 114 | Ga0373937_0144504 | 3300036401 | Bacteria | 2226 |
| 115 | Ga0373937_0238605 | 3300036401 | Unclassified | 1712 |
| 116 | Ga0373925_0026329 | 3300037068 | Bacteria | 4256 |
| 117 | Ga0451577_0052269 | 3300042876 | Bacteria | 3648 |
| 118 | Ga0466969_0018173 | 3300044656 | Bacteria | 3666 |
| 119 | Ga0466972_0022988 | 3300044658 | Bacteria | 3103 |
| 120 | Ga0466966_0010974 | 3300044684 | Bacteria | 6012 |
| 121 | Ga0466961_0008169 | 3300044693 | Bacteria | 6667 |
| 122 | Ga0453684_0025628 | 3300044712 | Bacteria | 8556 |
| 123 | Ga0453684_0069241 | 3300044712 | Bacteria | 4476 |
| 124 | Ga0466971_0110631 | 3300044719 | Bacteria | 1267 |
| 125 | Ga0466970_0007080 | 3300044765 | Bacteria | 5611 |
| 126 | Ga0466957_0047258 | 3300044842 | Bacteria | 2615 |
| 127 | Ga0466959_0153364 | 3300045049 | Unclassified | 1622 |
| 128 | Ga0466958_0003771 | 3300045836 | Bacteria | 7914 |
| 129 | Ga0495603_0339201 | 3300046455 | Bacteria | 862 |
| 130 | Ga0495580_0028491 | 3300046472 | Bacteria | 4059 |
| 131 | Ga0495594_0004510 | 3300046499 | Bacteria | 7163 |
| 132 | Ga0496101_0010738 | 3300048904 | Bacteria | 6057 |
| 133 | Ga0496106_0082365 | 3300048909 | Bacteria | 2473 |
| 134 | Ga0496107_0321792 | 3300048910 | Bacteria | 1151 |
| 135 | Ga0496114_0000273 | 3300048917 | Bacteria | 37601 |
| 136 | Ga0496115_0011895 | 3300048918 | Bacteria | 6536 |
| 137 | Ga0496115_0371657 | 3300048918 | Bacteria | 1164 |
| 138 | Ga0501039_0234993 | 3300049575 | Bacteria | 1441 |
| 139 | Ga0501046_0000003 | 3300049580 | Bacteria | 496142 |
| 140 | Ga0501070_0166390 | 3300049586 | Unclassified | 1817 |
| 141 | nmdc:mga06z11_176009_c1 | 3300050494 | Unclassified | 1231 |
| 142 | nmdc:mga06z11_181992_c1 | 3300050494 | Bacteria | 1212 |
| 143 | nmdc:mga05p37_1954_c1 | 3300050507 | Bacteria | 24044 |
| 144 | nmdc:mga09592_119639_c1 | 3300050508 | Bacteria | 2262 |
| 145 | nmdc:mga09592_3047_c1 | 3300050508 | Bacteria | 13598 |
| 146 | nmdc:mga09592_48415_c1 | 3300050508 | Unclassified | 3583 |
| 147 | nmdc:mga0qj67_52503_c1 | 3300050509 | Bacteria | 3226 |
| 148 | nmdc:mga08y16_144589_c1 | 3300050511 | Bacteria | 2472 |
| 149 | nmdc:mga08y16_89197_c1 | 3300050511 | Bacteria | 3214 |
| 150 | nmdc:mga0rr50_172764_c1 | 3300050513 | Bacteria | 1762 |
| 151 | nmdc:mga0a205_267143_c1 | 3300050515 | Bacteria | 1588 |
| 152 | nmdc:mga0sz30_139619_c1 | 3300050516 | Bacteria | 1070 |
| 153 | Ga0495619_0061248 | 3300053085 | Unclassified | 2504 |
| 154 | Ga0500616_0009342 | 3300053153 | Bacteria | 5973 |
| 155 | Ga0501084_0424414 | 3300054114 | Bacteria | 1124 |
| 156 | Ga0466962_0005309 | 3300061719 | Bacteria | 6190 |
Family Sequences
| Sample | Scaffold | Protein | Protein Length | |
|---|---|---|---|---|
| 1 | 3300046455 | Ga0495603_0339201 | Ga0495603_0339201_64_843 | 236 |
| 2 | iso_pu_bacteria | 2885342637 | 2885345255 | 284 |
| 3 | 3300009174 | Ga0105241_10560982 | Ga0105241_105609822 | 285 |
| 4 | 3300035083 | Ga0373926_0017872 | Ga0373926_0017872_626_1549 | 285 |
| 5 | 3300035692 | Ga0373935_0016180 | Ga0373935_0016180_2153_3076 | 285 |
| 6 | 3300035695 | Ga0373927_0143502 | Ga0373927_0143502_508_1431 | 285 |
| 7 | 3300048918 | Ga0496115_0371657 | Ga0496115_0371657_152_1009 | 285 |
| 8 | 3300035170 | Ga0373943_0008392 | Ga0373943_0008392_876_1808 | 287 |
| 9 | 3300037068 | Ga0373925_0026329 | Ga0373925_0026329_660_1592 | 287 |
| 10 | 3300009176 | Ga0105242_10277579 | Ga0105242_102775792 | 289 |
| 11 | 3300013308 | Ga0157375_10390558 | Ga0157375_103905582 | 289 |
| 12 | 3300035695 | Ga0373927_0019850 | Ga0373927_0019850_2130_3023 | 289 |
| 13 | 3300046472 | Ga0495580_0028491 | Ga0495580_0028491_911_1804 | 289 |
| 14 | 3300046499 | Ga0495594_0004510 | Ga0495594_0004510_4378_5271 | 289 |
| 15 | 3300050494 | nmdc:mga06z11_176009_c1 | nmdc:mga06z11_176009_c1_348_1217 | 289 |
| 16 | 3300005518 | Ga0070699_100008373 | Ga0070699_1000083735 | 298 |
| 17 | 3300049580 | Ga0501046_0000003 | Ga0501046_0000003_476099_477157 | 298 |
| 18 | 3300025942 | Ga0207689_10093725 | Ga0207689_100937253 | 300 |
| 19 | 3300026116 | Ga0207674_10019550 | Ga0207674_100195505 | 300 |
| 20 | 3300054114 | Ga0501084_0424414 | Ga0501084_0424414_35_967 | 300 |
| 21 | iso_pu_bacteria | 3000135777 | 3000138283 | 300 |
| 22 | iso_pu_bacteria | 8004640170 | 8004643230 | 300 |
| 23 | 3300044656 | Ga0466969_0018173 | Ga0466969_0018173_332_1246 | 301 |
| 24 | 3300044684 | Ga0466966_0010974 | Ga0466966_0010974_1550_2464 | 301 |
| 25 | 3300044693 | Ga0466961_0008169 | Ga0466961_0008169_2789_3703 | 301 |
| 26 | 3300044719 | Ga0466971_0110631 | Ga0466971_0110631_150_1064 | 301 |
| 27 | 3300044842 | Ga0466957_0047258 | Ga0466957_0047258_637_1551 | 301 |
| 28 | 3300045049 | Ga0466959_0153364 | Ga0466959_0153364_98_1012 | 301 |
| 29 | 3300045836 | Ga0466958_0003771 | Ga0466958_0003771_2453_3367 | 301 |
| 30 | 3300048910 | Ga0496107_0321792 | Ga0496107_0321792_153_1103 | 301 |
| 31 | 3300061719 | Ga0466962_0005309 | Ga0466962_0005309_4392_5306 | 301 |
| 32 | 3300009094 | Ga0111539_10004020 | Ga0111539_1000402014 | 302 |
| 33 | 3300025933 | Ga0207706_10180786 | Ga0207706_101807862 | 302 |
| 34 | 3300027907 | Ga0207428_10088710 | Ga0207428_100887103 | 302 |
| 35 | 3300032002 | Ga0307416_100029740 | Ga0307416_1000297403 | 302 |
| 36 | 3300050511 | nmdc:mga08y16_89197_c1 | nmdc:mga08y16_89197_c1_665_1594 | 302 |
| 37 | 3300028573 | Ga0265334_10076874 | Ga0265334_100768742 | 303 |
| 38 | iso_pu_bacteria | 2856349417 | 2856350282 | 303 |
| 39 | iso_pu_bacteria | 2881155292 | 2881156112 | 303 |
| 40 | iso_pu_bacteria | 2961127735 | 2961132107 | 303 |
| 41 | 3300053153 | Ga0500616_0009342 | Ga0500616_0009342_2395_3309 | 304 |
| 42 | 3300005844 | Ga0068862_100071875 | Ga0068862_1000718752 | 305 |
| 43 | 3300005985 | Ga0081539_10013479 | Ga0081539_100134793 | 305 |
| 44 | 3300031548 | Ga0307408_100308069 | Ga0307408_1003080691 | 305 |
| 45 | 3300031731 | Ga0307405_10040990 | Ga0307405_100409902 | 305 |
| 46 | 3300031903 | Ga0307407_10041670 | Ga0307407_100416703 | 305 |
| 47 | 3300032126 | Ga0307415_100059952 | Ga0307415_1000599523 | 305 |
| 48 | 3300005471 | Ga0070698_100020905 | Ga0070698_1000209056 | 306 |
| 49 | 3300005518 | Ga0070699_100050088 | Ga0070699_1000500882 | 306 |
| 50 | 3300005577 | Ga0068857_100461158 | Ga0068857_1004611582 | 306 |
| 51 | 3300005844 | Ga0068862_100499040 | Ga0068862_1004990401 | 306 |
| 52 | 3300006178 | Ga0075367_10000303 | Ga0075367_100003036 | 306 |
| 53 | 3300009553 | Ga0105249_10109566 | Ga0105249_101095662 | 306 |
| 54 | 3300026116 | Ga0207674_10477101 | Ga0207674_104771011 | 306 |
| 55 | 3300028380 | Ga0268265_10037516 | Ga0268265_100375162 | 306 |
| 56 | 3300005445 | Ga0070708_100172804 | Ga0070708_1001728042 | 307 |
| 57 | 3300005536 | Ga0070697_100067286 | Ga0070697_1000672862 | 307 |
| 58 | 3300005546 | Ga0070696_100144658 | Ga0070696_1001446582 | 307 |
| 59 | 3300006038 | Ga0075365_10128690 | Ga0075365_101286902 | 307 |
| 60 | 3300006844 | Ga0075428_100050220 | Ga0075428_1000502205 | 307 |
| 61 | 3300006847 | Ga0075431_100429475 | Ga0075431_1004294752 | 307 |
| 62 | 3300006880 | Ga0075429_100044363 | Ga0075429_1000443633 | 307 |
| 63 | 3300006914 | Ga0075436_100170769 | Ga0075436_1001707692 | 307 |
| 64 | 3300009147 | Ga0114129_10011260 | Ga0114129_100112605 | 307 |
| 65 | 3300009553 | Ga0105249_10128048 | Ga0105249_101280482 | 307 |
| 66 | 3300025910 | Ga0207684_10258551 | Ga0207684_102585512 | 307 |
| 67 | 3300025916 | Ga0207663_10277408 | Ga0207663_102774082 | 307 |
| 68 | 3300035086 | Ga0373934_0021601 | Ga0373934_0021601_55_978 | 307 |
| 69 | 3300035111 | Ga0373923_0012352 | Ga0373923_0012352_859_1782 | 307 |
| 70 | 3300035118 | Ga0373954_0118297 | Ga0373954_0118297_243_1166 | 307 |
| 71 | 3300035410 | Ga0373924_0029287 | Ga0373924_0029287_164_1087 | 307 |
| 72 | 3300035692 | Ga0373935_0070184 | Ga0373935_0070184_1230_2153 | 307 |
| 73 | 3300035695 | Ga0373927_0145267 | Ga0373927_0145267_367_1290 | 307 |
| 74 | 3300035724 | Ga0373933_0043651 | Ga0373933_0043651_394_1317 | 307 |
| 75 | 3300036401 | Ga0373937_0144504 | Ga0373937_0144504_623_1546 | 307 |
| 76 | 3300036401 | Ga0373937_0238605 | Ga0373937_0238605_297_1220 | 307 |
| 77 | 3300042876 | Ga0451577_0052269 | Ga0451577_0052269_2251_3174 | 307 |
| 78 | 3300044712 | Ga0453684_0025628 | Ga0453684_0025628_7558_8481 | 307 |
| 79 | 3300044712 | Ga0453684_0069241 | Ga0453684_0069241_1959_2882 | 307 |
| 80 | 3300049575 | Ga0501039_0234993 | Ga0501039_0234993_337_1287 | 307 |
| 81 | 3300049586 | Ga0501070_0166390 | Ga0501070_0166390_634_1617 | 307 |
| 82 | 3300050507 | nmdc:mga05p37_1954_c1 | nmdc:mga05p37_1954_c1_13952_14875 | 307 |
| 83 | 3300050508 | nmdc:mga09592_119639_c1 | nmdc:mga09592_119639_c1_742_1665 | 307 |
| 84 | 3300050508 | nmdc:mga09592_3047_c1 | nmdc:mga09592_3047_c1_6017_6940 | 307 |
| 85 | 3300050509 | nmdc:mga0qj67_52503_c1 | nmdc:mga0qj67_52503_c1_2148_3071 | 307 |
| 86 | 3300050513 | nmdc:mga0rr50_172764_c1 | nmdc:mga0rr50_172764_c1_753_1676 | 307 |
| 87 | 3300050516 | nmdc:mga0sz30_139619_c1 | nmdc:mga0sz30_139619_c1_86_1045 | 307 |
| 88 | 3300053085 | Ga0495619_0061248 | Ga0495619_0061248_232_1155 | 307 |
| 89 | 3300005293 | Ga0065715_10131460 | Ga0065715_101314602 | 308 |
| 90 | 3300005293 | Ga0065715_10188162 | Ga0065715_101881621 | 308 |
| 91 | 3300005330 | Ga0070690_100043949 | Ga0070690_1000439493 | 308 |
| 92 | 3300005331 | Ga0070670_100393803 | Ga0070670_1003938031 | 308 |
| 93 | 3300005334 | Ga0068869_100105545 | Ga0068869_1001055453 | 308 |
| 94 | 3300005340 | Ga0070689_100011158 | Ga0070689_1000111586 | 308 |
| 95 | 3300005345 | Ga0070692_10222015 | Ga0070692_102220151 | 308 |
| 96 | 3300005353 | Ga0070669_100047421 | Ga0070669_1000474213 | 308 |
| 97 | 3300005353 | Ga0070669_100173763 | Ga0070669_1001737632 | 308 |
| 98 | 3300005354 | Ga0070675_100025745 | Ga0070675_1000257454 | 308 |
| 99 | 3300005354 | Ga0070675_100112755 | Ga0070675_1001127552 | 308 |
| 100 | 3300005364 | Ga0070673_100026327 | Ga0070673_1000263272 | 308 |
| 101 | 3300005365 | Ga0070688_100018502 | Ga0070688_1000185023 | 308 |
| 102 | 3300005365 | Ga0070688_100037621 | Ga0070688_1000376212 | 308 |
| 103 | 3300005438 | Ga0070701_10024027 | Ga0070701_100240273 | 308 |
| 104 | 3300005444 | Ga0070694_100195441 | Ga0070694_1001954412 | 308 |
| 105 | 3300005445 | Ga0070708_100287116 | Ga0070708_1002871162 | 308 |
| 106 | 3300005468 | Ga0070707_100086624 | Ga0070707_1000866242 | 308 |
| 107 | 3300005471 | Ga0070698_100132647 | Ga0070698_1001326473 | 308 |
| 108 | 3300005518 | Ga0070699_100187304 | Ga0070699_1001873042 | 308 |
| 109 | 3300005539 | Ga0068853_100129689 | Ga0068853_1001296892 | 308 |
| 110 | 3300005544 | Ga0070686_100008652 | Ga0070686_1000086526 | 308 |
| 111 | 3300005617 | Ga0068859_100026999 | Ga0068859_1000269993 | 308 |
| 112 | 3300005617 | Ga0068859_100176294 | Ga0068859_1001762942 | 308 |
| 113 | 3300005618 | Ga0068864_100010850 | Ga0068864_1000108506 | 308 |
| 114 | 3300006048 | Ga0075363_100009629 | Ga0075363_1000096294 | 308 |
| 115 | 3300006844 | Ga0075428_100224768 | Ga0075428_1002247682 | 308 |
| 116 | 3300006931 | Ga0097620_100026998 | Ga0097620_1000269984 | 308 |
| 117 | 3300006931 | Ga0097620_100176298 | Ga0097620_1001762982 | 308 |
| 118 | 3300009094 | Ga0111539_10154135 | Ga0111539_101541352 | 308 |
| 119 | 3300009094 | Ga0111539_10756607 | Ga0111539_107566072 | 308 |
| 120 | 3300009148 | Ga0105243_10108078 | Ga0105243_101080783 | 308 |
| 121 | 3300013308 | Ga0157375_10156244 | Ga0157375_101562443 | 308 |
| 122 | 3300014326 | Ga0157380_10441929 | Ga0157380_104419292 | 308 |
| 123 | 3300014745 | Ga0157377_10041742 | Ga0157377_100417422 | 308 |
| 124 | 3300014968 | Ga0157379_10018983 | Ga0157379_100189831 | 308 |
| 125 | 3300021388 | Ga0213875_10006233 | Ga0213875_100062335 | 308 |
| 126 | 3300025914 | Ga0207671_10018989 | Ga0207671_100189895 | 308 |
| 127 | 3300025920 | Ga0207649_10146045 | Ga0207649_101460452 | 308 |
| 128 | 3300025923 | Ga0207681_10151557 | Ga0207681_101515572 | 308 |
| 129 | 3300025925 | Ga0207650_10025839 | Ga0207650_100258391 | 308 |
| 130 | 3300025926 | Ga0207659_10000584 | Ga0207659_1000058412 | 308 |
| 131 | 3300025926 | Ga0207659_10066924 | Ga0207659_100669242 | 308 |
| 132 | 3300025926 | Ga0207659_10353634 | Ga0207659_103536342 | 308 |
| 133 | 3300025931 | Ga0207644_10396286 | Ga0207644_103962861 | 308 |
| 134 | 3300025935 | Ga0207709_10147759 | Ga0207709_101477592 | 308 |
| 135 | 3300025936 | Ga0207670_10117642 | Ga0207670_101176422 | 308 |
| 136 | 3300025936 | Ga0207670_10186398 | Ga0207670_101863982 | 308 |
| 137 | 3300025938 | Ga0207704_10147651 | Ga0207704_101476513 | 308 |
| 138 | 3300025938 | Ga0207704_10184926 | Ga0207704_101849262 | 308 |
| 139 | 3300025942 | Ga0207689_10111870 | Ga0207689_101118702 | 308 |
| 140 | 3300025960 | Ga0207651_10016150 | Ga0207651_100161502 | 308 |
| 141 | 3300025972 | Ga0207668_10307842 | Ga0207668_103078422 | 308 |
| 142 | 3300025972 | Ga0207668_10377021 | Ga0207668_103770212 | 308 |
| 143 | 3300026035 | Ga0207703_10445560 | Ga0207703_104455602 | 308 |
| 144 | 3300026041 | Ga0207639_10273847 | Ga0207639_102738472 | 308 |
| 145 | 3300028380 | Ga0268265_10371498 | Ga0268265_103714982 | 308 |
| 146 | 3300028577 | Ga0265318_10027338 | Ga0265318_100273382 | 308 |
| 147 | 3300029957 | Ga0265324_10000007 | Ga0265324_100000071 | 308 |
| 148 | 3300031241 | Ga0265325_10007835 | Ga0265325_100078353 | 308 |
| 149 | 3300031241 | Ga0265325_10098959 | Ga0265325_100989592 | 308 |
| 150 | 3300031249 | Ga0265339_10004177 | Ga0265339_100041773 | 308 |
| 151 | 3300031595 | Ga0265313_10002137 | Ga0265313_1000213715 | 308 |
| 152 | 3300031711 | Ga0265314_10109947 | Ga0265314_101099472 | 308 |
| 153 | 3300044658 | Ga0466972_0022988 | Ga0466972_0022988_60_1160 | 308 |
| 154 | 3300044765 | Ga0466970_0007080 | Ga0466970_0007080_2507_3616 | 308 |
| 155 | 3300048904 | Ga0496101_0010738 | Ga0496101_0010738_2777_3706 | 308 |
| 156 | 3300048909 | Ga0496106_0082365 | Ga0496106_0082365_708_1637 | 308 |
| 157 | 3300048917 | Ga0496114_0000273 | Ga0496114_0000273_17661_18590 | 308 |
| 158 | 3300048918 | Ga0496115_0011895 | Ga0496115_0011895_1235_2164 | 308 |
| 159 | 3300050494 | nmdc:mga06z11_181992_c1 | nmdc:mga06z11_181992_c1_201_1145 | 308 |
| 160 | 3300050508 | nmdc:mga09592_48415_c1 | nmdc:mga09592_48415_c1_2297_3226 | 308 |
| 161 | 3300050511 | nmdc:mga08y16_144589_c1 | nmdc:mga08y16_144589_c1_613_1542 | 308 |
| 162 | 3300050515 | nmdc:mga0a205_267143_c1 | nmdc:mga0a205_267143_c1_35_967 | 308 |
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 6yak-assembly1.cif.gz_DDD | split gene transketolase, active alpha2beta2 heterotetramer | 0.948 | 2 | 305 |
| 6yaj-assembly1.cif.gz_AAA | split gene transketolase, inactive beta4 tetramer | 0.9343 | 2 | 305 |
| 6yak-assembly1.cif.gz_DDD | split gene transketolase, active alpha2beta2 heterotetramer | 0.9302 | 2 | 305 |
| 6yaj-assembly1.cif.gz_CCC | split gene transketolase, inactive beta4 tetramer | 0.929 | 4 | 305 |
| 4kxw-assembly1.cif.gz_A | human transketolase in covalent complex with donor ketose d-xylulose-5-phosphate, crystal 2 | 0.9252 | 2 | 303 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_Q58092_3_181_3.40.50.970 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.9521 | 1 | 164 | 3.40.50.970 |
| af_O50408_212_377_3.40.50.970 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.944 | 4 | 160 | 3.40.50.970 |
| af_P9WNS3_497_621_3.40.50.920 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; | 0.9393 | 182 | 304 | 3.40.50.920 |
| af_Q58092_187_315_3.40.50.920 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold; | 0.9378 | 175 | 305 | 3.40.50.920 |
| af_I1M1A4_399_568_3.40.50.970 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Thiamin diphosphate (ThDP)-binding fold, Pyr/PP domains | 0.934 | 2 | 163 | 3.40.50.970 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-I4H9A0-F1-model_v4 | Putative transketolase, C-terminal section (TK) (EC 2.2.1.1) | 0.9726 | 1 | 117 |
GO:0004802
|
| AF-A0A662QTR7-F1-model_v4 | deleted | 0.9695 | 1 | 305 |
|
| AF-A0A3A4ZU73-F1-model_v4 | Transketolase-like pyrimidine-binding domain-containing protein | 0.9662 | 1 | 302 |
GO:0003824
|
| AF-A0A2H9LGF6-F1-model_v4 | 1-deoxy-D-xylulose-5-phosphate synthase | 0.9654 | 1 | 303 |
GO:0003824
GO:0006082 GO:0044272 |
| AF-A0A1V5V2B9-F1-model_v4 | 1-deoxy-D-xylulose-5-phosphate synthase (EC 2.2.1.7) | 0.965 | 1 | 301 |
GO:0008661
|
Predicted Structure (AlphaFold2)
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