F239535
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 162 | 122 | 162 | 186 |
Family's Representative Sequence
| Representative Sequence | 3300028556|Ga0265337_1011317|Ga0265337_10113173 |
| Length | 224 |
| Sequence | MGLESIREIIFIQIPGLWCLSIETVTGCEQSNWCEALYEAKAAQLILYGRALGLTHGEAEDVLQETFLVLLKMVAPPLGRMPLEPEHYCVRSFRNRALNHRRSLWRRLTRELESLRWFEKSPGETEAERAAMNCLAGLPVEQREAIVLKIWHRFTFEEIGGLLGISPNTAAGRYRYGLQKIKHRLEGIDYGRERNEITGEPAAFLASAPGVGDAYVAVAAGARR |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300004801 | Switchgrass rhizosphere and bulk soil microbial communities from Kellogg Biological Station, Michigan, USA for expression studies - roots SR-3 (Metagenome Metatranscriptome) | Metatranscriptome | Unclassified |
| 2 | 3300005330 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG | Metagenome | Rhizosphere |
| 3 | 3300005334 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 | Metagenome | Rhizosphere |
| 4 | 3300005340 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG | Metagenome | Rhizosphere |
| 5 | 3300005354 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG | Metagenome | Rhizosphere |
| 6 | 3300005365 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG | Metagenome | Rhizosphere |
| 7 | 3300005435 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG | Metagenome | Rhizosphere |
| 8 | 3300005438 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG | Metagenome | Rhizosphere |
| 9 | 3300005439 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG | Metagenome | Rhizosphere |
| 10 | 3300005440 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG | Metagenome | Rhizosphere |
| 11 | 3300005441 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG | Metagenome | Rhizosphere |
| 12 | 3300005444 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG | Metagenome | Rhizosphere |
| 13 | 3300005466 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG | Metagenome | Rhizosphere |
| 14 | 3300005530 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG | Metagenome | Rhizosphere |
| 15 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 16 | 3300005544 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG | Metagenome | Rhizosphere |
| 17 | 3300005549 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG | Metagenome | Rhizosphere |
| 18 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 19 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 20 | 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Metagenome | Rhizosphere |
| 21 | 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Metagenome | Rhizosphere |
| 22 | 3300005719 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 | Metagenome | Rhizosphere |
| 23 | 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Metagenome | Rhizosphere |
| 24 | 3300005844 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 | Metagenome | Rhizosphere |
| 25 | 3300005937 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 | Metagenome | Rhizosphere |
| 26 | 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 27 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 28 | 3300006847 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 | Metagenome | Rhizosphere |
| 29 | 3300006880 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 | Metagenome | Rhizosphere |
| 30 | 3300006931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 31 | 3300007265 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 | Metagenome | Rhizosphere |
| 32 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 33 | 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Metagenome | Rhizosphere |
| 34 | 3300009177 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG | Metagenome | Rhizosphere |
| 35 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 36 | 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Metagenome | Rhizosphere |
| 37 | 3300010159 | Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 | Metagenome | Rhizosphere |
| 38 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 39 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 40 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 41 | 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Metagenome | Rhizosphere |
| 42 | 3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Metagenome | Rhizosphere |
| 43 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 44 | 3300025916 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 45 | 3300025918 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 46 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 47 | 3300025929 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 48 | 3300025934 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 49 | 3300025936 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 50 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 51 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 52 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 53 | 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 54 | 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 55 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 56 | 3300027907 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) | Metagenome | Rhizosphere |
| 57 | 3300028380 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 58 | 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 59 | 3300028556 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG | Metagenome | Rhizosphere |
| 60 | 3300028563 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG | Metagenome | Rhizosphere |
| 61 | 3300028654 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG | Metagenome | Rhizosphere |
| 62 | 3300028666 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG | Metagenome | Rhizosphere |
| 63 | 3300028800 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG | Metagenome | Rhizosphere |
| 64 | 3300029957 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG | Metagenome | Rhizosphere |
| 65 | 3300031239 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG | Metagenome | Rhizosphere |
| 66 | 3300031240 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG | Metagenome | Rhizosphere |
| 67 | 3300031242 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG | Metagenome | Rhizosphere |
| 68 | 3300031249 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG | Metagenome | Rhizosphere |
| 69 | 3300031344 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG | Metagenome | Rhizosphere |
| 70 | 3300031595 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG | Metagenome | Rhizosphere |
| 71 | 3300031711 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG | Metagenome | Rhizosphere |
| 72 | 3300032005 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 | Metagenome | Rhizosphere |
| 73 | 3300035083 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 | Metagenome | Rhizosphere |
| 74 | 3300035089 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 | Metagenome | Rhizosphere |
| 75 | 3300035118 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 | Metagenome | Rhizosphere |
| 76 | 3300035119 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 | Metagenome | Rhizosphere |
| 77 | 3300035691 | Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 | Metagenome | Rhizosphere |
| 78 | 3300035692 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 | Metagenome | Rhizosphere |
| 79 | 3300035695 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 | Metagenome | Rhizosphere |
| 80 | 3300035724 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 | Metagenome | Rhizosphere |
| 81 | 3300035725 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 | Metagenome | Rhizosphere |
| 82 | 3300036401 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 83 | 3300037068 | Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 84 | 3300042876 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED | Metagenome | Rhizosphere |
| 85 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 86 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 87 | 3300046454 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere | Metagenome | Rhizosphere |
| 88 | 3300046473 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere | Metagenome | Rhizosphere |
| 89 | 3300046476 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere | Metagenome | Rhizosphere |
| 90 | 3300046477 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere | Metagenome | Rhizosphere |
| 91 | 3300046514 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere | Metagenome | Rhizosphere |
| 92 | 3300046516 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere | Metagenome | Rhizosphere |
| 93 | 3300046517 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere | Metagenome | Rhizosphere |
| 94 | 3300046526 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere | Metagenome | Rhizosphere |
| 95 | 3300046529 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere | Metagenome | Rhizosphere |
| 96 | 3300046533 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere | Metagenome | Rhizosphere |
| 97 | 3300046535 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere | Metagenome | Rhizosphere |
| 98 | 3300046539 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere | Metagenome | Rhizosphere |
| 99 | 3300046642 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere | Metagenome | Rhizosphere |
| 100 | 3300046678 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere | Metagenome | Rhizosphere |
| 101 | 3300046683 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere | Metagenome | Rhizosphere |
| 102 | 3300046689 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL2_54_28 rhizosphere | Metagenome | Rhizosphere |
| 103 | 3300047319 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere | Metagenome | Rhizosphere |
| 104 | 3300047321 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere | Metagenome | Rhizosphere |
| 105 | 3300047471 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere | Metagenome | Rhizosphere |
| 106 | 3300048915 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 | Metagenome | Rhizoplane |
| 107 | 3300048918 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 | Metagenome | Rhizoplane |
| 108 | 3300049570 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 109 | 3300049573 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 110 | 3300049579 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 111 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 112 | 3300049586 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 | Metagenome | Rhizosphere |
| 113 | 3300049589 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 | Metagenome | Rhizosphere |
| 114 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 115 | 3300049744 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 | Metagenome | Rhizosphere |
| 116 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 117 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 118 | 3300050508 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation | Metagenome | Rhizosphere |
| 119 | 3300050510 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation | Metagenome | Rhizosphere |
| 120 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 121 | 3300050514 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation | Metagenome | Rhizosphere |
| 122 | 3300053098 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co1_16_8 endosphere | Metagenome | Endosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 99.38 |
| Metatranscriptomes | 0.62 |
| Isolates | 0 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 0.62 |
| Nodule | 0 |
| Rhizoplane | 1.23 |
| Rhizosphere | 97.53 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0.62 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0058860_11782633 | 3300004801 | Unclassified | 668 |
| 2 | Ga0070690_100007016 | 3300005330 | Bacteria | 6423 |
| 3 | Ga0068869_101049895 | 3300005334 | Bacteria | 711 |
| 4 | Ga0070689_100009370 | 3300005340 | Bacteria | 6938 |
| 5 | Ga0070689_100193438 | 3300005340 | Bacteria | 1657 |
| 6 | Ga0070675_100192164 | 3300005354 | Bacteria | 1769 |
| 7 | Ga0070688_100089426 | 3300005365 | Bacteria | 2009 |
| 8 | Ga0070688_100858318 | 3300005365 | Unclassified | 713 |
| 9 | Ga0070714_100771400 | 3300005435 | Bacteria | 930 |
| 10 | Ga0070701_10679415 | 3300005438 | Unclassified | 690 |
| 11 | Ga0070711_100055412 | 3300005439 | Bacteria | 2739 |
| 12 | Ga0070705_100507802 | 3300005440 | Bacteria | 916 |
| 13 | Ga0070700_100648875 | 3300005441 | Unclassified | 833 |
| 14 | Ga0070694_100369099 | 3300005444 | Bacteria | 1116 |
| 15 | Ga0070685_10125339 | 3300005466 | Unclassified | 1599 |
| 16 | Ga0070679_100419121 | 3300005530 | Bacteria | 1284 |
| 17 | Ga0070684_100469909 | 3300005535 | Bacteria | 1163 |
| 18 | Ga0070686_100016907 | 3300005544 | Bacteria | 4251 |
| 19 | Ga0070704_100069345 | 3300005549 | Bacteria | 2554 |
| 20 | Ga0068857_100006991 | 3300005577 | Bacteria | 9709 |
| 21 | Ga0068857_100277486 | 3300005577 | Bacteria | 1541 |
| 22 | Ga0068856_100679349 | 3300005614 | Bacteria | 1050 |
| 23 | Ga0068859_100029964 | 3300005617 | Bacteria | 5459 |
| 24 | Ga0068864_100063411 | 3300005618 | Bacteria | 3202 |
| 25 | Ga0068861_101304742 | 3300005719 | Unclassified | 706 |
| 26 | Ga0068858_100194761 | 3300005842 | Bacteria | 1915 |
| 27 | Ga0068862_100396496 | 3300005844 | Bacteria | 1290 |
| 28 | Ga0081455_10617443 | 3300005937 | Unclassified | 704 |
| 29 | Ga0097621_100762746 | 3300006237 | Unclassified | 894 |
| 30 | Ga0075428_100002301 | 3300006844 | Bacteria | 20676 |
| 31 | Ga0075428_100220540 | 3300006844 | Bacteria | 2048 |
| 32 | Ga0075428_100363191 | 3300006844 | Archaea | 1553 |
| 33 | Ga0075431_100123622 | 3300006847 | Bacteria | 2670 |
| 34 | Ga0075429_100171523 | 3300006880 | Archaea | 1900 |
| 35 | Ga0097620_100029964 | 3300006931 | Bacteria | 5459 |
| 36 | Ga0099794_10163210 | 3300007265 | Unclassified | 1134 |
| 37 | Ga0111539_10024767 | 3300009094 | Bacteria | 7360 |
| 38 | Ga0111539_10476429 | 3300009094 | Archaea | 1454 |
| 39 | Ga0105242_10491565 | 3300009176 | Bacteria | 1165 |
| 40 | Ga0105248_11269089 | 3300009177 | Unclassified | 833 |
| 41 | Ga0105238_10025732 | 3300009551 | Bacteria | 6000 |
| 42 | Ga0105238_10141528 | 3300009551 | Bacteria | 2382 |
| 43 | Ga0105249_10149658 | 3300009553 | Bacteria | 2246 |
| 44 | Ga0105249_10869573 | 3300009553 | Bacteria | 968 |
| 45 | Ga0099796_10185570 | 3300010159 | Unclassified | 837 |
| 46 | Ga0157370_10081965 | 3300013104 | Bacteria | 3035 |
| 47 | Ga0163162_11188583 | 3300013306 | Unclassified | 865 |
| 48 | Ga0163163_10000045 | 3300014325 | Bacteria | 135325 |
| 49 | Ga0163163_10086219 | 3300014325 | Bacteria | 3149 |
| 50 | Ga0163163_10357283 | 3300014325 | Unclassified | 1517 |
| 51 | Ga0163163_10677697 | 3300014325 | Bacteria | 1095 |
| 52 | Ga0157379_11347719 | 3300014968 | Unclassified | 690 |
| 53 | Ga0157376_10086905 | 3300014969 | Unclassified | 2697 |
| 54 | Ga0157376_10112402 | 3300014969 | Bacteria | 2400 |
| 55 | Ga0157376_10467780 | 3300014969 | Unclassified | 1233 |
| 56 | Ga0157376_10908906 | 3300014969 | Unclassified | 899 |
| 57 | Ga0207695_10329509 | 3300025913 | Bacteria | 1415 |
| 58 | Ga0207663_10041545 | 3300025916 | Bacteria | 2803 |
| 59 | Ga0207662_10137215 | 3300025918 | Bacteria | 1547 |
| 60 | Ga0207694_10099599 | 3300025924 | Bacteria | 2302 |
| 61 | Ga0207664_10585407 | 3300025929 | Bacteria | 1002 |
| 62 | Ga0207686_10501527 | 3300025934 | Unclassified | 942 |
| 63 | Ga0207670_10005494 | 3300025936 | Bacteria | 6965 |
| 64 | Ga0207667_10037862 | 3300025949 | Bacteria | 5155 |
| 65 | Ga0207703_10604307 | 3300026035 | Bacteria | 1038 |
| 66 | Ga0207702_10016135 | 3300026078 | Bacteria | 6183 |
| 67 | Ga0207641_11416363 | 3300026088 | Unclassified | 696 |
| 68 | Ga0207676_10128589 | 3300026095 | Bacteria | 2150 |
| 69 | Ga0207674_10012922 | 3300026116 | Bacteria | 9311 |
| 70 | Ga0207428_10341792 | 3300027907 | Bacteria | 1102 |
| 71 | Ga0207428_10400851 | 3300027907 | Bacteria | 1004 |
| 72 | Ga0268265_10067292 | 3300028380 | Bacteria | 2773 |
| 73 | Ga0268264_10795767 | 3300028381 | Unclassified | 944 |
| 74 | Ga0265337_1008739 | 3300028556 | Bacteria | 3657 |
| 75 | Ga0265337_1009501 | 3300028556 | Bacteria | 3468 |
| 76 | Ga0265337_1011317 | 3300028556 | Unclassified | 3079 |
| 77 | Ga0265319_1000016 | 3300028563 | Bacteria | 176245 |
| 78 | Ga0265322_10021869 | 3300028654 | Bacteria | 1832 |
| 79 | Ga0265336_10024915 | 3300028666 | Bacteria | 1886 |
| 80 | Ga0265336_10126792 | 3300028666 | Unclassified | 760 |
| 81 | Ga0265338_10034022 | 3300028800 | Unclassified | 4935 |
| 82 | Ga0265338_10057917 | 3300028800 | Unclassified | 3424 |
| 83 | Ga0265338_10084867 | 3300028800 | Bacteria | 2642 |
| 84 | Ga0265338_10104023 | 3300028800 | Bacteria | 2305 |
| 85 | Ga0265324_10169721 | 3300029957 | Bacteria | 741 |
| 86 | Ga0265328_10040876 | 3300031239 | Bacteria | 1708 |
| 87 | Ga0265320_10002885 | 3300031240 | Bacteria | 11789 |
| 88 | Ga0265320_10039482 | 3300031240 | Unclassified | 2360 |
| 89 | Ga0265329_10004265 | 3300031242 | Bacteria | 6003 |
| 90 | Ga0265339_10198494 | 3300031249 | Bacteria | 991 |
| 91 | Ga0265316_10122618 | 3300031344 | Unclassified | 1962 |
| 92 | Ga0265316_10544875 | 3300031344 | Unclassified | 826 |
| 93 | Ga0265313_10011429 | 3300031595 | Bacteria | 5522 |
| 94 | Ga0265314_10001100 | 3300031711 | Bacteria | 31213 |
| 95 | Ga0265314_10015977 | 3300031711 | Bacteria | 5944 |
| 96 | Ga0265314_10035409 | 3300031711 | Bacteria | 3639 |
| 97 | Ga0307411_11380533 | 3300032005 | Unclassified | 644 |
| 98 | Ga0373926_0016361 | 3300035083 | Bacteria | 2535 |
| 99 | Ga0373944_0164842 | 3300035089 | Unclassified | 788 |
| 100 | Ga0373954_0056493 | 3300035118 | Unclassified | 1847 |
| 101 | Ga0373954_0296479 | 3300035118 | Unclassified | 797 |
| 102 | Ga0373956_0144607 | 3300035119 | Bacteria | 1117 |
| 103 | Ga0373931_0127910 | 3300035691 | Unclassified | 1459 |
| 104 | Ga0373935_0028356 | 3300035692 | Bacteria | 3461 |
| 105 | Ga0373927_0008887 | 3300035695 | Bacteria | 6746 |
| 106 | Ga0373927_0434180 | 3300035695 | Bacteria | 867 |
| 107 | Ga0373933_0112307 | 3300035724 | Bacteria | 1701 |
| 108 | Ga0373933_0538024 | 3300035724 | Unclassified | 766 |
| 109 | Ga0373947_0040852 | 3300035725 | Bacteria | 2764 |
| 110 | Ga0373937_0125291 | 3300036401 | Bacteria | 2396 |
| 111 | Ga0373925_0007974 | 3300037068 | Bacteria | 7711 |
| 112 | Ga0373925_0142609 | 3300037068 | Bacteria | 1876 |
| 113 | Ga0451577_0197143 | 3300042876 | Bacteria | 1817 |
| 114 | Ga0451577_0608264 | 3300042876 | Unclassified | 992 |
| 115 | Ga0453684_0001256 | 3300044712 | Bacteria | 76375 |
| 116 | Ga0453684_0327175 | 3300044712 | Bacteria | 1734 |
| 117 | Ga0453684_1296837 | 3300044712 | Unclassified | 760 |
| 118 | Ga0451576_0140488 | 3300045051 | Bacteria | 2519 |
| 119 | Ga0451576_1029173 | 3300045051 | Bacteria | 863 |
| 120 | Ga0495592_0000012 | 3300046454 | Bacteria | 154054 |
| 121 | Ga0495582_0116179 | 3300046473 | Bacteria | 1505 |
| 122 | Ga0495662_0226077 | 3300046476 | Bacteria | 922 |
| 123 | Ga0495664_0423686 | 3300046477 | Bacteria | 798 |
| 124 | Ga0495618_0002124 | 3300046514 | Bacteria | 12985 |
| 125 | Ga0495628_0000320 | 3300046516 | Bacteria | 43366 |
| 126 | Ga0495630_0000010 | 3300046517 | Bacteria | 265324 |
| 127 | Ga0495666_0036179 | 3300046526 | Bacteria | 2405 |
| 128 | Ga0495652_0106334 | 3300046529 | Unclassified | 2266 |
| 129 | Ga0495640_0083907 | 3300046533 | Unclassified | 2114 |
| 130 | Ga0495586_0000048 | 3300046535 | Bacteria | 71629 |
| 131 | Ga0495586_0000867 | 3300046535 | Bacteria | 17339 |
| 132 | Ga0495621_0143982 | 3300046539 | Unclassified | 934 |
| 133 | Ga0495634_0125052 | 3300046642 | Bacteria | 1644 |
| 134 | Ga0495599_0008232 | 3300046678 | Bacteria | 6340 |
| 135 | Ga0495658_0027223 | 3300046683 | Bacteria | 3073 |
| 136 | Ga0495613_0607853 | 3300046689 | Bacteria | 727 |
| 137 | Ga0495674_0159017 | 3300047319 | Unclassified | 1891 |
| 138 | Ga0495676_0109400 | 3300047321 | Bacteria | 2031 |
| 139 | Ga0495676_0257170 | 3300047321 | Unclassified | 1189 |
| 140 | Ga0495684_0414913 | 3300047471 | Unclassified | 942 |
| 141 | Ga0496112_1465420 | 3300048915 | Unclassified | 597 |
| 142 | Ga0496115_0010040 | 3300048918 | Bacteria | 7056 |
| 143 | Ga0501033_0455237 | 3300049570 | Bacteria | 888 |
| 144 | Ga0501037_0064331 | 3300049573 | Bacteria | 2673 |
| 145 | Ga0501043_0259899 | 3300049579 | Bacteria | 1336 |
| 146 | Ga0501043_0908490 | 3300049579 | Bacteria | 631 |
| 147 | Ga0501047_0260747 | 3300049581 | Bacteria | 1581 |
| 148 | Ga0501070_0492993 | 3300049586 | Bacteria | 985 |
| 149 | Ga0501073_0312021 | 3300049589 | Bacteria | 1085 |
| 150 | Ga0501080_0108187 | 3300049742 | Bacteria | 2577 |
| 151 | Ga0501083_0531544 | 3300049744 | Unclassified | 765 |
| 152 | Ga0501035_0008625 | 3300049822 | Bacteria | 9485 |
| 153 | Ga0501035_0136291 | 3300049822 | Bacteria | 2137 |
| 154 | Ga0501044_0031577 | 3300049823 | Bacteria | 5574 |
| 155 | Ga0501044_0171772 | 3300049823 | Unclassified | 2139 |
| 156 | nmdc:mga09592_168884_c1 | 3300050508 | Archaea | 1891 |
| 157 | nmdc:mga06r32_122076_c1 | 3300050510 | Bacteria | 2570 |
| 158 | nmdc:mga08y16_1116473_c1 | 3300050511 | Unclassified | 763 |
| 159 | nmdc:mga08y16_231942_c1 | 3300050511 | Bacteria | 1909 |
| 160 | nmdc:mga08y16_8571_c1 | 3300050511 | Bacteria | 10713 |
| 161 | nmdc:mga08x19_393777_c1 | 3300050514 | Bacteria | 971 |
| 162 | Ga0500650_0019858 | 3300053098 | Unclassified | 2939 |
Family Sequences
| Sample | Scaffold | Protein | Protein Length | |
|---|---|---|---|---|
| 1 | 3300005617 | Ga0068859_100029964 | Ga0068859_1000299642 | 161 |
| 2 | 3300005842 | Ga0068858_100194761 | Ga0068858_1001947612 | 161 |
| 3 | 3300006931 | Ga0097620_100029964 | Ga0097620_1000299643 | 161 |
| 4 | 3300026035 | Ga0207703_10604307 | Ga0207703_106043072 | 161 |
| 5 | 3300005937 | Ga0081455_10617443 | Ga0081455_106174431 | 171 |
| 6 | 3300042876 | Ga0451577_0608264 | Ga0451577_0608264_401_916 | 171 |
| 7 | 3300044712 | Ga0453684_1296837 | Ga0453684_1296837_141_656 | 171 |
| 8 | 3300005330 | Ga0070690_100007016 | Ga0070690_1000070164 | 174 |
| 9 | 3300048918 | Ga0496115_0010040 | Ga0496115_0010040_5402_5956 | 175 |
| 10 | 3300025949 | Ga0207667_10037862 | Ga0207667_100378623 | 176 |
| 11 | 3300005365 | Ga0070688_100858318 | Ga0070688_1008583182 | 177 |
| 12 | 3300014325 | Ga0163163_10677697 | Ga0163163_106776973 | 177 |
| 13 | 3300005340 | Ga0070689_100009370 | Ga0070689_1000093703 | 178 |
| 14 | 3300005354 | Ga0070675_100192164 | Ga0070675_1001921643 | 178 |
| 15 | 3300005365 | Ga0070688_100089426 | Ga0070688_1000894263 | 178 |
| 16 | 3300005466 | Ga0070685_10125339 | Ga0070685_101253393 | 178 |
| 17 | 3300005719 | Ga0068861_101304742 | Ga0068861_1013047421 | 178 |
| 18 | 3300006844 | Ga0075428_100363191 | Ga0075428_1003631913 | 178 |
| 19 | 3300006880 | Ga0075429_100171523 | Ga0075429_1001715233 | 178 |
| 20 | 3300009094 | Ga0111539_10476429 | Ga0111539_104764293 | 178 |
| 21 | 3300014325 | Ga0163163_10357283 | Ga0163163_103572832 | 178 |
| 22 | 3300025936 | Ga0207670_10005494 | Ga0207670_100054943 | 178 |
| 23 | 3300028556 | Ga0265337_1008739 | Ga0265337_10087391 | 178 |
| 24 | 3300028666 | Ga0265336_10024915 | Ga0265336_100249152 | 178 |
| 25 | 3300031240 | Ga0265320_10002885 | Ga0265320_100028859 | 178 |
| 26 | 3300037068 | Ga0373925_0142609 | Ga0373925_0142609_772_1341 | 178 |
| 27 | 3300049579 | Ga0501043_0908490 | Ga0501043_0908490_75_617 | 178 |
| 28 | 3300049744 | Ga0501083_0531544 | Ga0501083_0531544_100_642 | 178 |
| 29 | 3300050508 | nmdc:mga09592_168884_c1 | nmdc:mga09592_168884_c1_579_1115 | 178 |
| 30 | 3300050511 | nmdc:mga08y16_1116473_c1 | nmdc:mga08y16_1116473_c1_157_693 | 178 |
| 31 | 3300032005 | Ga0307411_11380533 | Ga0307411_113805331 | 179 |
| 32 | 3300005334 | Ga0068869_101049895 | Ga0068869_1010498951 | 180 |
| 33 | 3300005435 | Ga0070714_100771400 | Ga0070714_1007714002 | 180 |
| 34 | 3300025929 | Ga0207664_10585407 | Ga0207664_105854071 | 180 |
| 35 | 3300026088 | Ga0207641_11416363 | Ga0207641_114163632 | 180 |
| 36 | 3300005530 | Ga0070679_100419121 | Ga0070679_1004191213 | 181 |
| 37 | 3300009551 | Ga0105238_10025732 | Ga0105238_100257328 | 181 |
| 38 | 3300026078 | Ga0207702_10016135 | Ga0207702_100161358 | 181 |
| 39 | 3300028381 | Ga0268264_10795767 | Ga0268264_107957672 | 181 |
| 40 | 3300028800 | Ga0265338_10057917 | Ga0265338_100579173 | 181 |
| 41 | 3300005438 | Ga0070701_10679415 | Ga0070701_106794151 | 182 |
| 42 | 3300005441 | Ga0070700_100648875 | Ga0070700_1006488751 | 182 |
| 43 | 3300006844 | Ga0075428_100002301 | Ga0075428_10000230113 | 182 |
| 44 | 3300006844 | Ga0075428_100220540 | Ga0075428_1002205404 | 182 |
| 45 | 3300006847 | Ga0075431_100123622 | Ga0075431_1001236223 | 182 |
| 46 | 3300007265 | Ga0099794_10163210 | Ga0099794_101632101 | 182 |
| 47 | 3300009094 | Ga0111539_10024767 | Ga0111539_100247673 | 182 |
| 48 | 3300025913 | Ga0207695_10329509 | Ga0207695_103295092 | 182 |
| 49 | 3300027907 | Ga0207428_10341792 | Ga0207428_103417922 | 182 |
| 50 | 3300027907 | Ga0207428_10400851 | Ga0207428_104008512 | 182 |
| 51 | 3300031711 | Ga0265314_10015977 | Ga0265314_100159772 | 182 |
| 52 | 3300042876 | Ga0451577_0197143 | Ga0451577_0197143_862_1449 | 182 |
| 53 | 3300044712 | Ga0453684_0001256 | Ga0453684_0001256_68423_69010 | 182 |
| 54 | 3300046516 | Ga0495628_0000320 | Ga0495628_0000320_29287_29835 | 182 |
| 55 | 3300049589 | Ga0501073_0312021 | Ga0501073_0312021_278_832 | 182 |
| 56 | 3300050510 | nmdc:mga06r32_122076_c1 | nmdc:mga06r32_122076_c1_1332_1880 | 182 |
| 57 | 3300050511 | nmdc:mga08y16_231942_c1 | nmdc:mga08y16_231942_c1_1182_1730 | 182 |
| 58 | 3300050511 | nmdc:mga08y16_8571_c1 | nmdc:mga08y16_8571_c1_4169_4717 | 182 |
| 59 | 3300053098 | Ga0500650_0019858 | Ga0500650_0019858_1090_1638 | 182 |
| 60 | 3300004801 | Ga0058860_11782633 | Ga0058860_117826331 | 183 |
| 61 | 3300005340 | Ga0070689_100193438 | Ga0070689_1001934382 | 183 |
| 62 | 3300005439 | Ga0070711_100055412 | Ga0070711_1000554122 | 183 |
| 63 | 3300005440 | Ga0070705_100507802 | Ga0070705_1005078021 | 183 |
| 64 | 3300005444 | Ga0070694_100369099 | Ga0070694_1003690991 | 183 |
| 65 | 3300005535 | Ga0070684_100469909 | Ga0070684_1004699093 | 183 |
| 66 | 3300005544 | Ga0070686_100016907 | Ga0070686_1000169071 | 183 |
| 67 | 3300005549 | Ga0070704_100069345 | Ga0070704_1000693453 | 183 |
| 68 | 3300005577 | Ga0068857_100006991 | Ga0068857_1000069917 | 183 |
| 69 | 3300005577 | Ga0068857_100277486 | Ga0068857_1002774862 | 183 |
| 70 | 3300005614 | Ga0068856_100679349 | Ga0068856_1006793491 | 183 |
| 71 | 3300005618 | Ga0068864_100063411 | Ga0068864_1000634113 | 183 |
| 72 | 3300005844 | Ga0068862_100396496 | Ga0068862_1003964962 | 183 |
| 73 | 3300006237 | Ga0097621_100762746 | Ga0097621_1007627462 | 183 |
| 74 | 3300009176 | Ga0105242_10491565 | Ga0105242_104915652 | 183 |
| 75 | 3300009177 | Ga0105248_11269089 | Ga0105248_112690892 | 183 |
| 76 | 3300009551 | Ga0105238_10141528 | Ga0105238_101415283 | 183 |
| 77 | 3300009553 | Ga0105249_10149658 | Ga0105249_101496583 | 183 |
| 78 | 3300009553 | Ga0105249_10869573 | Ga0105249_108695732 | 183 |
| 79 | 3300010159 | Ga0099796_10185570 | Ga0099796_101855701 | 183 |
| 80 | 3300013104 | Ga0157370_10081965 | Ga0157370_100819653 | 183 |
| 81 | 3300013306 | Ga0163162_11188583 | Ga0163162_111885831 | 183 |
| 82 | 3300014325 | Ga0163163_10000045 | Ga0163163_1000004536 | 183 |
| 83 | 3300014325 | Ga0163163_10086219 | Ga0163163_100862193 | 183 |
| 84 | 3300014968 | Ga0157379_11347719 | Ga0157379_113477191 | 183 |
| 85 | 3300014969 | Ga0157376_10086905 | Ga0157376_100869053 | 183 |
| 86 | 3300014969 | Ga0157376_10112402 | Ga0157376_101124023 | 183 |
| 87 | 3300014969 | Ga0157376_10467780 | Ga0157376_104677802 | 183 |
| 88 | 3300014969 | Ga0157376_10908906 | Ga0157376_109089061 | 183 |
| 89 | 3300025916 | Ga0207663_10041545 | Ga0207663_100415453 | 183 |
| 90 | 3300025918 | Ga0207662_10137215 | Ga0207662_101372152 | 183 |
| 91 | 3300025924 | Ga0207694_10099599 | Ga0207694_100995993 | 183 |
| 92 | 3300025934 | Ga0207686_10501527 | Ga0207686_105015272 | 183 |
| 93 | 3300026095 | Ga0207676_10128589 | Ga0207676_101285892 | 183 |
| 94 | 3300026116 | Ga0207674_10012922 | Ga0207674_100129226 | 183 |
| 95 | 3300028380 | Ga0268265_10067292 | Ga0268265_100672923 | 183 |
| 96 | 3300028556 | Ga0265337_1009501 | Ga0265337_10095013 | 183 |
| 97 | 3300028556 | Ga0265337_1011317 | Ga0265337_10113173 | 183 |
| 98 | 3300028563 | Ga0265319_1000016 | Ga0265319_100001657 | 183 |
| 99 | 3300028654 | Ga0265322_10021869 | Ga0265322_100218692 | 183 |
| 100 | 3300028666 | Ga0265336_10126792 | Ga0265336_101267922 | 183 |
| 101 | 3300028800 | Ga0265338_10034022 | Ga0265338_100340223 | 183 |
| 102 | 3300028800 | Ga0265338_10084867 | Ga0265338_100848673 | 183 |
| 103 | 3300028800 | Ga0265338_10104023 | Ga0265338_101040231 | 183 |
| 104 | 3300029957 | Ga0265324_10169721 | Ga0265324_101697211 | 183 |
| 105 | 3300031239 | Ga0265328_10040876 | Ga0265328_100408762 | 183 |
| 106 | 3300031240 | Ga0265320_10039482 | Ga0265320_100394823 | 183 |
| 107 | 3300031242 | Ga0265329_10004265 | Ga0265329_100042652 | 183 |
| 108 | 3300031249 | Ga0265339_10198494 | Ga0265339_101984942 | 183 |
| 109 | 3300031344 | Ga0265316_10122618 | Ga0265316_101226183 | 183 |
| 110 | 3300031344 | Ga0265316_10544875 | Ga0265316_105448751 | 183 |
| 111 | 3300031595 | Ga0265313_10011429 | Ga0265313_100114293 | 183 |
| 112 | 3300031711 | Ga0265314_10001100 | Ga0265314_1000110017 | 183 |
| 113 | 3300031711 | Ga0265314_10035409 | Ga0265314_100354094 | 183 |
| 114 | 3300035083 | Ga0373926_0016361 | Ga0373926_0016361_1898_2464 | 183 |
| 115 | 3300035089 | Ga0373944_0164842 | Ga0373944_0164842_35_658 | 183 |
| 116 | 3300035118 | Ga0373954_0056493 | Ga0373954_0056493_651_1202 | 183 |
| 117 | 3300035118 | Ga0373954_0296479 | Ga0373954_0296479_188_739 | 183 |
| 118 | 3300035119 | Ga0373956_0144607 | Ga0373956_0144607_97_648 | 183 |
| 119 | 3300035691 | Ga0373931_0127910 | Ga0373931_0127910_663_1220 | 183 |
| 120 | 3300035692 | Ga0373935_0028356 | Ga0373935_0028356_2496_3062 | 183 |
| 121 | 3300035695 | Ga0373927_0008887 | Ga0373927_0008887_1758_2324 | 183 |
| 122 | 3300035695 | Ga0373927_0434180 | Ga0373927_0434180_45_596 | 183 |
| 123 | 3300035724 | Ga0373933_0112307 | Ga0373933_0112307_20_571 | 183 |
| 124 | 3300035724 | Ga0373933_0538024 | Ga0373933_0538024_25_576 | 183 |
| 125 | 3300035725 | Ga0373947_0040852 | Ga0373947_0040852_1602_2168 | 183 |
| 126 | 3300036401 | Ga0373937_0125291 | Ga0373937_0125291_1697_2248 | 183 |
| 127 | 3300037068 | Ga0373925_0007974 | Ga0373925_0007974_1161_1727 | 183 |
| 128 | 3300044712 | Ga0453684_0327175 | Ga0453684_0327175_902_1483 | 183 |
| 129 | 3300045051 | Ga0451576_0140488 | Ga0451576_0140488_1431_1985 | 183 |
| 130 | 3300045051 | Ga0451576_1029173 | Ga0451576_1029173_47_661 | 183 |
| 131 | 3300046454 | Ga0495592_0000012 | Ga0495592_0000012_124815_125375 | 183 |
| 132 | 3300046473 | Ga0495582_0116179 | Ga0495582_0116179_599_1150 | 183 |
| 133 | 3300046476 | Ga0495662_0226077 | Ga0495662_0226077_40_600 | 183 |
| 134 | 3300046477 | Ga0495664_0423686 | Ga0495664_0423686_107_667 | 183 |
| 135 | 3300046514 | Ga0495618_0002124 | Ga0495618_0002124_6691_7251 | 183 |
| 136 | 3300046517 | Ga0495630_0000010 | Ga0495630_0000010_121897_122448 | 183 |
| 137 | 3300046526 | Ga0495666_0036179 | Ga0495666_0036179_223_789 | 183 |
| 138 | 3300046529 | Ga0495652_0106334 | Ga0495652_0106334_109_669 | 183 |
| 139 | 3300046533 | Ga0495640_0083907 | Ga0495640_0083907_602_1162 | 183 |
| 140 | 3300046535 | Ga0495586_0000048 | Ga0495586_0000048_43593_44144 | 183 |
| 141 | 3300046535 | Ga0495586_0000867 | Ga0495586_0000867_15914_16474 | 183 |
| 142 | 3300046539 | Ga0495621_0143982 | Ga0495621_0143982_241_798 | 183 |
| 143 | 3300046642 | Ga0495634_0125052 | Ga0495634_0125052_275_835 | 183 |
| 144 | 3300046678 | Ga0495599_0008232 | Ga0495599_0008232_5597_6157 | 183 |
| 145 | 3300046683 | Ga0495658_0027223 | Ga0495658_0027223_1265_1888 | 183 |
| 146 | 3300046689 | Ga0495613_0607853 | Ga0495613_0607853_98_649 | 183 |
| 147 | 3300047319 | Ga0495674_0159017 | Ga0495674_0159017_950_1510 | 183 |
| 148 | 3300047321 | Ga0495676_0109400 | Ga0495676_0109400_347_898 | 183 |
| 149 | 3300047321 | Ga0495676_0257170 | Ga0495676_0257170_57_623 | 183 |
| 150 | 3300047471 | Ga0495684_0414913 | Ga0495684_0414913_365_916 | 183 |
| 151 | 3300048915 | Ga0496112_1465420 | Ga0496112_1465420_15_566 | 183 |
| 152 | 3300049570 | Ga0501033_0455237 | Ga0501033_0455237_143_694 | 183 |
| 153 | 3300049573 | Ga0501037_0064331 | Ga0501037_0064331_1085_1636 | 183 |
| 154 | 3300049579 | Ga0501043_0259899 | Ga0501043_0259899_50_601 | 183 |
| 155 | 3300049581 | Ga0501047_0260747 | Ga0501047_0260747_239_790 | 183 |
| 156 | 3300049586 | Ga0501070_0492993 | Ga0501070_0492993_331_882 | 183 |
| 157 | 3300049742 | Ga0501080_0108187 | Ga0501080_0108187_1683_2240 | 183 |
| 158 | 3300049822 | Ga0501035_0008625 | Ga0501035_0008625_5854_6405 | 183 |
| 159 | 3300049822 | Ga0501035_0136291 | Ga0501035_0136291_478_1035 | 183 |
| 160 | 3300049823 | Ga0501044_0031577 | Ga0501044_0031577_2861_3412 | 183 |
| 161 | 3300049823 | Ga0501044_0171772 | Ga0501044_0171772_1424_2059 | 183 |
| 162 | 3300050514 | nmdc:mga08x19_393777_c1 | nmdc:mga08x19_393777_c1_26_577 | 183 |
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 2o8x-assembly1.cif.gz_A | "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" | 0.992 | 102 | 152 |
| 2o8x-assembly1.cif.gz_B | "crystal structure of the ""-35 element"" promoter recognition domain of mycobacterium tuberculosis sigc" | 0.9892 | 102 | 152 |
| 3hug-assembly2.cif.gz_E | crystal structure of mycobacterium tuberculosis anti-sigma factor rsla in complex with -35 promoter binding domain of sigl | 0.9869 | 98 | 160 |
| 7bhy-assembly1.cif.gz_A | dna-binding domain of deor in complex with the dna operator | 0.9806 | 112 | 151 |
| 7bhy-assembly1.cif.gz_B | dna-binding domain of deor in complex with the dna operator | 0.9796 | 112 | 151 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 2o8xA00 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.992 | 102 | 152 | 1.10.10.10 |
| 2o8xC00 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.9912 | 104 | 152 | 1.10.10.10 |
| 2o8xB00 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.9892 | 102 | 152 | 1.10.10.10 |
| 3hugG00 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.9752 | 98 | 158 | 1.10.10.10 |
| 3hugO00 | Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain | 0.9741 | 98 | 158 | 1.10.10.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A6N6PZA8-F1-model_v4 | Sigma-70 family RNA polymerase sigma factor | 0.8651 | 1 | 155 |
GO:0003677
GO:0006352 GO:0016987 |
| AF-A0A1K1PND6-F1-model_v4 | RNA polymerase sigma-70 factor, ECF subfamily | 0.8523 | 6 | 164 |
GO:0003677
GO:0005737 GO:0006352 GO:0016987 |
| AF-A0A177QMC6-F1-model_v4 | deleted | 0.8491 | 12 | 157 |
|
| AF-A0A255QQF8-F1-model_v4 | RNA polymerase subunit sigma-70 | 0.8334 | 10 | 166 |
GO:0003677
GO:0006352 GO:0016987 |
| AF-A0A2V4WBD9-F1-model_v4 | deleted | 0.8279 | 1 | 161 |
|
Predicted Structure (AlphaFold2)
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