F239431

General Info

Members Datasets Scaffolds Average Seq Length
162 109 138 565

Family's Representative Sequence

Representative Sequence 3300025913|Ga0207695_10152816|Ga0207695_101528162
Length 601
Sequence MARRPSNRAVTGKSSLPRTPIRYDGLLMSNHEVAIDVGKIRKFDHPGRGRERARPVPKGRQVDPHASTEIQALLGDAPRERTYLIEYLHKIQDTYGQLSAAHLAALAEEMRLAYAEVFETATFYAHFDVVKEGAPHIAPLTVRVCDSLTCAMFGGEDLLKRLKAELGGDQVRVVRAPCVGLCDHAPAAEVGHNFLKRATVDTVKSAVGHNDTHPHIPDYIDYDEYRAGGGYQTLDKLRRGGLTVEAILKILDDSSLRGLGGAGFPTGRKWRSVRGEPGPRLMAVNGDEGEPGTFKDQYFLNTDPHRFLEGTLIGAHVVEASDVYIYIRDEYPIAREILANEIAKLPPGGPTLHLRRGAGAYICGEESSLMESIEGKRGLPRHKPPFPFQVGLFGRPTLINNVETLFWIRDLIERGPDWWKSHGRNGRTGLRSYSVSGRVKEPGMKLAPAGVTIQELIDEFCGGMSEGHKFAAYLPGGASGGILPASMNDIPLDFGTLEKYGCFIGSAAVVVLSDQDDVRGAALNLMRFFEDESCGQCTPCRSGTEKAVMLMEKGDWDTELLGELSQCMRDASICGLGQAASNPLTSVIRYFPDLFSSPRGK

Samples

Sample ID Description Type Environment
1 2545555834 Methylobacterium sp. WSM2598 Isolate Nodule
2 2597490356 Azospirillum brasilense sp7 Isolate Unclassified
3 2643221603 Noviherbaspirillum sp. Root189 Isolate Unclassified
4 2643221733 Bosea sp. Root381 Isolate Unclassified
5 2643221736 Bosea sp. Root483D1 Isolate Unclassified
6 2738541281 Methylobacterium sp. GV094 Isolate Unclassified
7 2738543032 Methylobacterium sp. GV104 Isolate Unclassified
8 2829745981 Methylorubrum rhodinum DSM 2163 Isolate Rhizosphere
9 2841760612 Bosea sp. Tri-49 Isolate Nodule
10 2841911363 Bosea caraganae RCAM04685 Isolate Nodule
11 2841917233 Bosea caraganae RCAM04680 Isolate Nodule
12 2844104063 Bosea sp. Tri-39 Isolate Nodule
13 2846952575 Azospirillum brasilense sp7 Isolate Unclassified
14 2848858292 Azospirillum brasilense Az39 Isolate Unclassified
15 2851182111 Bosea sp. Tri-44 Isolate Nodule
16 2851246043 Bosea sp. Tri-54 Isolate Nodule
17 2857524615 Tardiphaga sp. R-73074 Isolate Unclassified
18 2861691609 Methylorubrum thiocyanatum DSM 11490 Isolate Rhizosphere
19 2889306138 Methylobacterium sp. PvR107 Isolate Rhizosphere
20 2902405164 Methylobacterium sp. P1-11 Isolate Unclassified
21 3300005262 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) Metagenome Endosphere
22 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
23 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
24 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
25 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
26 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
27 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
28 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
29 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
30 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
31 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
32 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
33 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
34 3300005545 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-2 metaG Metagenome Rhizosphere
35 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
36 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
37 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
38 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
39 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
40 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
41 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
42 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
43 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
44 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
45 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
46 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
47 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
48 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
49 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
50 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
63 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
65 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
66 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
67 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
68 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
69 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
70 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
71 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
72 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
73 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
74 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
75 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
76 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
77 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
78 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
79 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
80 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
81 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
82 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
83 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
84 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
85 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
86 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
87 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
88 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
89 3300046664 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co1_5_9 rhizosphere Metagenome Rhizosphere
90 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
91 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
92 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
93 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
94 3300048914 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 Metagenome Rhizoplane
95 3300048916 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5d N15 Metagenome Rhizoplane
96 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
97 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
98 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
100 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
101 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
102 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
103 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere
104 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
105 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
106 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
107 641522639 Methylobacterium sp. 4-46 Isolate Nodule
108 643348564 Methylobacterium nodulans ORS 2060 Isolate Nodule
109 8057529695 Bosea vestrisii A18/4-2 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 85.19
Metatranscriptomes 0
Isolates 14.81

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 3.7
Nodule 6.79
Rhizoplane 4.32
Rhizosphere 69.75
Stem 0
Stem Tuber 0
Unclassified 15.43

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0065165_1000608 3300005262 Bacteria 52133
2 Ga0070680_100000283 3300005336 Bacteria 33791
3 Ga0070680_100053607 3300005336 Bacteria 3293
4 Ga0070668_100008077 3300005347 Bacteria 7814
5 Ga0070675_100098462 3300005354 Bacteria 2460
6 Ga0070709_10059370 3300005434 Bacteria 2428
7 Ga0070714_100017986 3300005435 Bacteria 5732
8 Ga0070714_100061910 3300005435 Bacteria 3215
9 Ga0070678_100090572 3300005456 Bacteria 2345
10 Ga0070681_10021805 3300005458 Bacteria 6423
11 Ga0070681_10029704 3300005458 Bacteria 5488
12 Ga0070681_10053749 3300005458 Bacteria 4013
13 Ga0070681_10095157 3300005458 Bacteria 2927
14 Ga0070681_10100508 3300005458 Bacteria 2838
15 Ga0070707_100005389 3300005468 Bacteria 11968
16 Ga0070698_100000788 3300005471 Bacteria 34385
17 Ga0070699_100057375 3300005518 Bacteria 3372
18 Ga0070699_100057993 3300005518 Bacteria 3353
19 Ga0070699_100108788 3300005518 Bacteria 2433
20 Ga0070679_100002773 3300005530 Bacteria 15924
21 Ga0070679_100012136 3300005530 Bacteria 8232
22 Ga0070684_100034067 3300005535 Bacteria 4352
23 Ga0070695_100001021 3300005545 Bacteria 15277
24 Ga0070665_100018818 3300005548 Bacteria 6924
25 Ga0070665_100047434 3300005548 Bacteria 4311
26 Ga0068855_100004224 3300005563 Bacteria 17535
27 Ga0068855_100029672 3300005563 Bacteria 6538
28 Ga0068855_100115672 3300005563 Bacteria 3074
29 Ga0081455_10028545 3300005937 Bacteria 5097
30 Ga0105240_10004543 3300009093 Bacteria 21070
31 Ga0105240_10005656 3300009093 Bacteria 18554
32 Ga0105240_10012540 3300009093 Bacteria 11693
33 Ga0105240_10014099 3300009093 Bacteria 10923
34 Ga0105240_10060693 3300009093 Bacteria 4713
35 Ga0105240_10194690 3300009093 Bacteria 2381
36 Ga0111539_10000239 3300009094 Bacteria 65601
37 Ga0105237_10015551 3300009545 Bacteria 7915
38 Ga0105238_10010243 3300009551 Bacteria 9404
39 Ga0105238_10084716 3300009551 Bacteria 3159
40 Ga0105238_10175806 3300009551 Bacteria 2117
41 Ga0157370_10001068 3300013104 Bacteria 34289
42 Ga0157370_10066815 3300013104 Bacteria 3399
43 Ga0157370_10067650 3300013104 Bacteria 3376
44 Ga0157369_10020220 3300013105 Bacteria 7443
45 Ga0157369_10086630 3300013105 Bacteria 3345
46 Ga0157375_10137266 3300013308 Bacteria 2571
47 Ga0213872_10036221 3300021361 Bacteria 2256
48 Ga0213876_10001013 3300021384 Bacteria 18227
49 Ga0213876_10003834 3300021384 Bacteria 8518
50 Ga0213875_10001344 3300021388 Bacteria 16189
51 Ga0213875_10006382 3300021388 Bacteria 6203
52 Ga0213871_10003430 3300021441 Bacteria 3053
53 Ga0209130_1000344 3300025284 Bacteria 53564
54 Ga0207699_10016134 3300025906 Bacteria 3899
55 Ga0207684_10109667 3300025910 Bacteria 2362
56 Ga0207707_10000444 3300025912 Bacteria 42985
57 Ga0207707_10006431 3300025912 Bacteria 10262
58 Ga0207707_10012613 3300025912 Bacteria 7344
59 Ga0207707_10024049 3300025912 Bacteria 5327
60 Ga0207695_10003323 3300025913 Bacteria 22796
61 Ga0207695_10050848 3300025913 Bacteria 4357
62 Ga0207695_10102176 3300025913 Bacteria 2860
63 Ga0207695_10152816 3300025913 Bacteria 2246
64 Ga0207660_10001104 3300025917 Bacteria 18020
65 Ga0207660_10029932 3300025917 Bacteria 3740
66 Ga0207657_10132557 3300025919 Bacteria 2041
67 Ga0207652_10001936 3300025921 Bacteria 17906
68 Ga0207652_10068560 3300025921 Bacteria 3078
69 Ga0207694_10053611 3300025924 Bacteria 3127
70 Ga0207659_10040661 3300025926 Bacteria 3253
71 Ga0207659_10052657 3300025926 Bacteria 2901
72 Ga0207700_10123719 3300025928 Bacteria 2100
73 Ga0207665_10006448 3300025939 Bacteria 7786
74 Ga0207667_10002448 3300025949 Bacteria 23216
75 Ga0207667_10016817 3300025949 Bacteria 8251
76 Ga0207428_10000098 3300027907 Bacteria 120181
77 Ga0268266_10003111 3300028379 Bacteria 16897
78 Ga0268266_10043821 3300028379 Bacteria 3824
79 Ga0265334_10014903 3300028573 Bacteria 3235
80 Ga0265338_10033824 3300028800 Bacteria 4954
81 Ga0265320_10003768 3300031240 Bacteria 10085
82 Ga0265316_10081386 3300031344 Bacteria 2482
83 Ga0307413_10025519 3300031824 Bacteria 3240
84 Ga0307410_10056703 3300031852 Bacteria 2665
85 Ga0316574_0025388 3300035398 Bacteria 3557
86 Ga0373935_0020125 3300035692 Bacteria 4074
87 Ga0373927_0057233 3300035695 Bacteria 2521
88 Ga0373947_0024476 3300035725 Bacteria 3519
89 Ga0373947_0032007 3300035725 Bacteria 3098
90 Ga0373937_0014708 3300036401 Bacteria 6911
91 Ga0373937_0035009 3300036401 Bacteria 4568
92 Ga0395900_0059649 3300037418 Bacteria 3928
93 Ga0395900_0107951 3300037418 Bacteria 2859
94 Ga0395898_0067357 3300037466 Bacteria 3466
95 Ga0436364_0360620 3300037853 Bacteria 14792
96 Ga0436364_0477825 3300037853 Bacteria 2926
97 Ga0436364_1011646 3300037853 Bacteria 2588
98 Ga0436364_1062603 3300037853 Bacteria 8686
99 Ga0395901_0003500 3300038443 Bacteria 15827
100 Ga0395901_0019039 3300038443 Bacteria 7018
101 Ga0436365_0230958 3300039437 Bacteria 17266
102 Ga0436365_0886091 3300039437 Bacteria 43353
103 Ga0436360_0337120 3300039438 Bacteria 6364
104 Ga0436360_0804213 3300039438 Bacteria 2320
105 Ga0436360_0984942 3300039438 Bacteria 4015
106 Ga0436361_0730087 3300039447 Bacteria 10986
107 Ga0436361_0746390 3300039447 Bacteria 4224
108 Ga0436361_1111065 3300039447 Bacteria 3091
109 Ga0436363_1224482 3300039450 Bacteria 12035
110 Ga0436363_1261345 3300039450 Bacteria 12716
111 Ga0436363_1357453 3300039450 Bacteria 4491
112 Ga0436363_1643289 3300039450 Bacteria 1827
113 Ga0466963_0007695 3300044694 Bacteria 6435
114 Ga0453684_0023528 3300044712 Bacteria 9063
115 Ga0466968_0006013 3300044735 Bacteria 4553
116 Ga0451576_0000724 3300045051 Bacteria 66525
117 Ga0495580_0000059 3300046472 Bacteria 64328
118 Ga0495606_0013888 3300046507 Bacteria 6322
119 Ga0495659_0012504 3300046664 Bacteria 2750
120 Ga0496102_0016669 3300048905 Bacteria 6426
121 Ga0496105_0003011 3300048908 Bacteria 12386
122 Ga0496108_0100287 3300048911 Bacteria 2469
123 Ga0496109_0005857 3300048912 Bacteria 10303
124 Ga0496111_0001028 3300048914 Bacteria 15329
125 Ga0496113_0004034 3300048916 Bacteria 8937
126 Ga0496115_0073636 3300048918 Bacteria 2773
127 Ga0496121_0030348 3300048924 Bacteria 4966
128 Ga0501034_0000973 3300049571 Bacteria 41178
129 Ga0501034_0004391 3300049571 Bacteria 15704
130 Ga0501034_0053688 3300049571 Bacteria 4058
131 Ga0501068_0012671 3300049584 Bacteria 4785
132 Ga0501044_0040593 3300049823 Bacteria 4849
133 nmdc:mga0yw44_43192_c1 3300050492 Bacteria 2690
134 nmdc:mga08y16_71_c1 3300050511 Bacteria 84502
135 Ga0495601_0012417 3300053077 Bacteria 5110
136 Ga0500641_0005503 3300053096 Bacteria 4486
137 Ga0500562_006639 3300053108 Bacteria 2917
138 Ga0500616_0000036 3300053153 Bacteria 390769

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300013104 Ga0157370_10067650 Ga0157370_100676504 483
2 3300039438 Ga0436360_0804213 Ga0436360_0804213_58_1530 486
3 3300039450 Ga0436363_1643289 Ga0436363_1643289_25_1518 486
4 3300048924 Ga0496121_0030348 Ga0496121_0030348_3462_4937 491
5 3300046664 Ga0495659_0012504 Ga0495659_0012504_1248_2726 492
6 3300053077 Ga0495601_0012417 Ga0495601_0012417_16_1494 492
7 3300053096 Ga0500641_0005503 Ga0500641_0005503_2998_4476 492
8 3300044712 Ga0453684_0023528 Ga0453684_0023528_7253_8770 496
9 3300045051 Ga0451576_0000724 Ga0451576_0000724_52115_53773 526
10 3300031240 Ga0265320_10003768 Ga0265320_100037682 527
11 3300035398 Ga0316574_0025388 Ga0316574_0025388_408_2009 529
12 3300050492 nmdc:mga0yw44_43192_c1 nmdc:mga0yw44_43192_c1_522_2123 529
13 3300035695 Ga0373927_0057233 Ga0373927_0057233_855_2483 540
14 iso_pu_bacteria 2545555834 2545672733 541
15 3300005535 Ga0070684_100034067 Ga0070684_1000340671 543
16 3300009093 Ga0105240_10194690 Ga0105240_101946902 543
17 3300025919 Ga0207657_10132557 Ga0207657_101325571 543
18 3300037418 Ga0395900_0107951 Ga0395900_0107951_601_2244 543
19 3300037466 Ga0395898_0067357 Ga0395898_0067357_83_1726 543
20 3300038443 Ga0395901_0003500 Ga0395901_0003500_601_2244 543
21 3300038443 Ga0395901_0019039 Ga0395901_0019039_4277_5920 543
22 3300044694 Ga0466963_0007695 Ga0466963_0007695_25_1665 543
23 3300049571 Ga0501034_0053688 Ga0501034_0053688_517_2163 543
24 3300031344 Ga0265316_10081386 Ga0265316_100813861 549
25 3300005336 Ga0070680_100053607 Ga0070680_1000536072 553
26 3300005458 Ga0070681_10100508 Ga0070681_101005082 553
27 3300005530 Ga0070679_100012136 Ga0070679_1000121365 553
28 3300025912 Ga0207707_10006431 Ga0207707_100064315 553
29 3300025921 Ga0207652_10068560 Ga0207652_100685602 553
30 3300025939 Ga0207665_10006448 Ga0207665_100064483 553
31 3300005435 Ga0070714_100017986 Ga0070714_1000179863 554
32 3300037853 Ga0436364_0360620 Ga0436364_0360620_10649_12334 561
33 iso_pu_bacteria 2643221603 2644030826 561
34 iso_pu_bacteria 643348564 643597408 561
35 3300036401 Ga0373937_0014708 Ga0373937_0014708_150_1850 562
36 3300039447 Ga0436361_0746390 Ga0436361_0746390_174_1874 562
37 3300046507 Ga0495606_0013888 Ga0495606_0013888_1650_3359 562
38 3300005458 Ga0070681_10029704 Ga0070681_100297044 563
39 iso_pu_bacteria 2857524615 2857529791 564
40 3300005456 Ga0070678_100090572 Ga0070678_1000905722 565
41 3300009093 Ga0105240_10012540 Ga0105240_100125404 565
42 3300021384 Ga0213876_10001013 Ga0213876_1000101316 565
43 3300021388 Ga0213875_10001344 Ga0213875_100013444 565
44 3300036401 Ga0373937_0035009 Ga0373937_0035009_1992_3701 565
45 3300037853 Ga0436364_0477825 Ga0436364_0477825_1169_2869 565
46 3300039437 Ga0436365_0230958 Ga0436365_0230958_251_1951 565
47 iso_pu_bacteria 2829745981 2829746003 565
48 iso_pu_bacteria 2861691609 2861696833 565
49 iso_pu_bacteria 2889306138 2889307900 565
50 iso_pu_bacteria 2902405164 2902407850 565
51 3300005471 Ga0070698_100000788 Ga0070698_10000078813 566
52 3300005518 Ga0070699_100057375 Ga0070699_1000573752 566
53 3300005548 Ga0070665_100047434 Ga0070665_1000474342 566
54 3300005937 Ga0081455_10028545 Ga0081455_100285452 566
55 3300021441 Ga0213871_10003430 Ga0213871_100034302 566
56 3300028379 Ga0268266_10043821 Ga0268266_100438213 566
57 3300039438 Ga0436360_0984942 Ga0436360_0984942_1447_3159 566
58 3300039447 Ga0436361_0730087 Ga0436361_0730087_9191_10903 566
59 3300049571 Ga0501034_0000973 Ga0501034_0000973_25636_27348 566
60 3300049571 Ga0501034_0004391 Ga0501034_0004391_8533_10245 566
61 3300049584 Ga0501068_0012671 Ga0501068_0012671_2408_4120 566
62 3300049823 Ga0501044_0040593 Ga0501044_0040593_1137_2849 566
63 iso_pu_bacteria 2738541281 2738744280 566
64 iso_pu_bacteria 2738543032 2739353510 566
65 iso_pu_bacteria 641522639 641643454 566
66 iso_pu_bacteria 643348564 643602858 566
67 3300005468 Ga0070707_100005389 Ga0070707_1000053892 567
68 3300005518 Ga0070699_100057993 Ga0070699_1000579932 567
69 3300025910 Ga0207684_10109667 Ga0207684_101096672 567
70 3300035692 Ga0373935_0020125 Ga0373935_0020125_1979_3694 567
71 3300037853 Ga0436364_1062603 Ga0436364_1062603_1223_2968 567
72 3300039438 Ga0436360_0337120 Ga0436360_0337120_2142_3845 567
73 iso_pu_bacteria 2597490356 2599101923 567
74 iso_pu_bacteria 2846952575 2846958069 567
75 iso_pu_bacteria 2848858292 2848864868 567
76 3300005435 Ga0070714_100061910 Ga0070714_1000619102 568
77 3300005563 Ga0068855_100115672 Ga0068855_1001156721 568
78 3300009093 Ga0105240_10005656 Ga0105240_100056567 568
79 3300009545 Ga0105237_10015551 Ga0105237_100155516 568
80 3300009551 Ga0105238_10084716 Ga0105238_100847162 568
81 3300009551 Ga0105238_10175806 Ga0105238_101758062 568
82 3300021361 Ga0213872_10036221 Ga0213872_100362212 568
83 3300025913 Ga0207695_10102176 Ga0207695_101021761 568
84 3300025928 Ga0207700_10123719 Ga0207700_101237192 568
85 3300039447 Ga0436361_1111065 Ga0436361_1111065_927_2633 568
86 3300039450 Ga0436363_1261345 Ga0436363_1261345_9662_11368 568
87 3300053108 Ga0500562_006639 Ga0500562_006639_609_2315 568
88 3300053153 Ga0500616_0000036 Ga0500616_0000036_352588_354294 568
89 iso_pu_bacteria 2841911363 2841912732 568
90 iso_pu_bacteria 2841917233 2841923031 568
91 3300005548 Ga0070665_100018818 Ga0070665_1000188183 569
92 3300009093 Ga0105240_10060693 Ga0105240_100606933 569
93 3300013105 Ga0157369_10086630 Ga0157369_100866302 569
94 3300021384 Ga0213876_10003834 Ga0213876_100038342 569
95 3300021388 Ga0213875_10006382 Ga0213875_100063822 569
96 3300025913 Ga0207695_10152816 Ga0207695_101528162 569
97 3300025926 Ga0207659_10040661 Ga0207659_100406612 569
98 3300028379 Ga0268266_10003111 Ga0268266_100031118 569
99 3300028573 Ga0265334_10014903 Ga0265334_100149032 569
100 3300035725 Ga0373947_0024476 Ga0373947_0024476_399_2126 569
101 3300039437 Ga0436365_0886091 Ga0436365_0886091_4499_6211 569
102 3300044735 Ga0466968_0006013 Ga0466968_0006013_1812_3530 569
103 3300046472 Ga0495580_0000059 Ga0495580_0000059_17072_18799 569
104 iso_pu_bacteria 2643221733 2644732612 569
105 iso_pu_bacteria 2643221736 2644743910 569
106 iso_pu_bacteria 2841760612 2841763099 569
107 iso_pu_bacteria 2844104063 2844109031 569
108 iso_pu_bacteria 2851182111 2851182343 569
109 iso_pu_bacteria 2851246043 2851251138 569
110 iso_pu_bacteria 8057529695 8057531820 569
111 3300005262 Ga0065165_1000608 Ga0065165_100060832 570
112 3300005336 Ga0070680_100000283 Ga0070680_1000002832 570
113 3300005347 Ga0070668_100008077 Ga0070668_1000080773 570
114 3300005354 Ga0070675_100098462 Ga0070675_1000984622 570
115 3300005434 Ga0070709_10059370 Ga0070709_100593702 570
116 3300005458 Ga0070681_10021805 Ga0070681_100218052 570
117 3300005458 Ga0070681_10053749 Ga0070681_100537493 570
118 3300005458 Ga0070681_10095157 Ga0070681_100951572 570
119 3300005518 Ga0070699_100108788 Ga0070699_1001087882 570
120 3300005530 Ga0070679_100002773 Ga0070679_1000027738 570
121 3300005545 Ga0070695_100001021 Ga0070695_1000010218 570
122 3300005563 Ga0068855_100004224 Ga0068855_10000422412 570
123 3300005563 Ga0068855_100029672 Ga0068855_1000296725 570
124 3300009093 Ga0105240_10004543 Ga0105240_1000454317 570
125 3300009093 Ga0105240_10014099 Ga0105240_100140992 570
126 3300009094 Ga0111539_10000239 Ga0111539_1000023954 570
127 3300009551 Ga0105238_10010243 Ga0105238_100102432 570
128 3300013104 Ga0157370_10001068 Ga0157370_1000106817 570
129 3300013104 Ga0157370_10066815 Ga0157370_100668152 570
130 3300013105 Ga0157369_10020220 Ga0157369_100202202 570
131 3300013308 Ga0157375_10137266 Ga0157375_101372662 570
132 3300025284 Ga0209130_1000344 Ga0209130_100034425 570
133 3300025906 Ga0207699_10016134 Ga0207699_100161342 570
134 3300025912 Ga0207707_10000444 Ga0207707_1000044418 570
135 3300025912 Ga0207707_10012613 Ga0207707_100126133 570
136 3300025912 Ga0207707_10024049 Ga0207707_100240492 570
137 3300025913 Ga0207695_10003323 Ga0207695_1000332320 570
138 3300025913 Ga0207695_10050848 Ga0207695_100508483 570
139 3300025917 Ga0207660_10001104 Ga0207660_1000110411 570
140 3300025917 Ga0207660_10029932 Ga0207660_100299322 570
141 3300025921 Ga0207652_10001936 Ga0207652_100019365 570
142 3300025924 Ga0207694_10053611 Ga0207694_100536111 570
143 3300025926 Ga0207659_10052657 Ga0207659_100526572 570
144 3300025949 Ga0207667_10002448 Ga0207667_100024487 570
145 3300025949 Ga0207667_10016817 Ga0207667_100168172 570
146 3300027907 Ga0207428_10000098 Ga0207428_10000098116 570
147 3300028800 Ga0265338_10033824 Ga0265338_100338242 570
148 3300031824 Ga0307413_10025519 Ga0307413_100255191 570
149 3300031852 Ga0307410_10056703 Ga0307410_100567032 570
150 3300035725 Ga0373947_0032007 Ga0373947_0032007_1095_2825 570
151 3300037418 Ga0395900_0059649 Ga0395900_0059649_1857_3584 570
152 3300037853 Ga0436364_1011646 Ga0436364_1011646_492_2207 570
153 3300039450 Ga0436363_1224482 Ga0436363_1224482_3869_5584 570
154 3300039450 Ga0436363_1357453 Ga0436363_1357453_324_2039 570
155 3300048905 Ga0496102_0016669 Ga0496102_0016669_4111_5841 570
156 3300048908 Ga0496105_0003011 Ga0496105_0003011_8486_10216 570
157 3300048911 Ga0496108_0100287 Ga0496108_0100287_416_2146 570
158 3300048912 Ga0496109_0005857 Ga0496109_0005857_4156_5886 570
159 3300048914 Ga0496111_0001028 Ga0496111_0001028_8732_10462 570
160 3300048916 Ga0496113_0004034 Ga0496113_0004034_2839_4569 570
161 3300048918 Ga0496115_0073636 Ga0496115_0073636_651_2381 570
162 3300050511 nmdc:mga08y16_71_c1 nmdc:mga08y16_71_c1_70883_72610 570

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01512

Complex1_51K

Respiratory-chain NADH dehydrogenase 51 Kd subunit

251

410

0.96

PF01257

2Fe-2S_thioredx

Thioredoxin-like [2Fe-2S] ferredoxin

70

210

0.91

PF10589

NADH_4Fe-4S

NADH-ubiquinone oxidoreductase-F iron-sulfur binding region

520

597

0.91

Structural Annotation

Top 5 Hits

ID Description Score Start End
8j83-assembly1.cif.gz_B crystal structure of formate dehydrogenase from methylorubrum extorquens am1 0.934 11 563
7vw6-assembly1.cif.gz_B cryo-em structure of formate dehydrogenase 1 from methylorubrum extorquens am1 0.927 8 563
8j83-assembly1.cif.gz_B crystal structure of formate dehydrogenase from methylorubrum extorquens am1 0.9259 11 563
7vw6-assembly1.cif.gz_B cryo-em structure of formate dehydrogenase 1 from methylorubrum extorquens am1 0.9189 8 563
8e73-assembly1.cif.gz_V1 vigna radiata supercomplex i+iii2 (full bridge) 0.9059 186 563
ID Description Score Start End Superfamily
af_P31979_241_332_3.10.20.600 Alpha Beta;Roll;Ubiquitin-like (UB roll); 0.8899 392 483 3.10.20.600
af_P9WIV7_242_335_3.10.20.600 Alpha Beta;Roll;Ubiquitin-like (UB roll); 0.8873 391 484 3.10.20.600
af_P31979_241_332_3.10.20.600 Alpha Beta;Roll;Ubiquitin-like (UB roll); 0.8811 392 483 3.10.20.600
af_P9WIV7_242_335_3.10.20.600 Alpha Beta;Roll;Ubiquitin-like (UB roll); 0.87 391 484 3.10.20.600
af_O94500_78_261_3.40.50.11540 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NADH-ubiquinone oxidoreductase 51kDa subunit 0.8618 224 386 3.40.50.11540
ID Description Score Start End GO Terms
AF-A0A351A1Z9-F1-model_v4 NADH-quinone oxidoreductase subunit F 0.968 53 178 GO:0003954
GO:0046872
GO:0051536
AF-A0A533IR60-F1-model_v4 deleted 0.9678 43 425
AF-A0A6L7SXK2-F1-model_v4 NADH-quinone oxidoreductase subunit F (NADH dehydrogenase I subunit F) (NDH-1 subunit F) 0.9675 351 563 GO:0008137
GO:0010181
GO:0046872
GO:0051539
AF-A0A258QF26-F1-model_v4 NADH-quinone oxidoreductase subunit F 0.9616 136 492 GO:0008137
GO:0010181
GO:0046872
GO:0051539
AF-A0A533IR60-F1-model_v4 deleted 0.9604 43 425

Feature Viewer

pLDDT pTM Quality
86.27 0.87 High
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Predicted Structure (AlphaFold2)

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