F239255
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 162 | 118 | 324 | 734 |
Family's Representative Sequence
| Representative Sequence | 3300013102|Ga0157371_10018016|Ga0157371_100180166 |
| Length | 771 |
| Sequence | LLILARDISIFFYLRRLKKTLKLIFMLAYSSSVSEKLSIPEKQVFSVLELLNEGATIPFIARYRKDKTGALDEVQIQKIQEEAKFQQEFSERKTFIEKTITDQGKMTDFLQEKINEATTLNELEDIYLPYKPKRKTKAQTARDNGLEPLALLLLKQENIVPQSEAETFINEKIIDAEMALQGARDIIAEMVNEDAEVRAKMRKLFEQTATIQSKILSDKEEAGIKYKDYFDFAEPVSKIPSHRILAIMRGFMEGFLKMTIAPEEEIALLKIEEQFIQANNQAAEQVKKAIKESYRRLLQPSLESEFRMALKTKADEEAISVFAENLRQLLLSSPLGSKRIIAIDPGYRTGCKVVVLDEKGELQQTDLIFVHEKNFKLNEAAHKIREHISKYNIEAFAIGDGTAGRETEQFIKGLNTGLPVFLVNEDGASIYSASEIAREEFPDQDITVRGAVSIGRRLMDPLAELVKIDPKSIGVGQYQHDVNQVRLKEKLDQTVISCVNAVGVNLNTAGKYLLSYVSGIGPSLAENIVNYRKEKGRFSNRKQLKEVPRLGEKAFEQCAGFLRIKNGDNPLDESGVHPESYKIVEQIAKDAGIMLKDIIGNENIVNKIPSQSYVTENIGLHTLQDILKELKKPGLDPRSHAQMFEFANIYSIEDVKVGMIVPGQVTNLTRFGAFIDIGVKQDGLVHVSEIAQKYISDPGEVLKLNDKVMVKVLEVDLPRKRIALSIKQTQEAPTKNQRLAKSNHQNSSKPKEKETASMEDAISLLRKKFGK |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300013102 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG | Metagenome | Rhizosphere |
| 2 | 2162886007 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 | Metagenome | Rhizosphere |
| 3 | 3300001979 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 | Metagenome | Rhizosphere |
| 4 | 3300002738 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA | Metagenome | Unclassified |
| 5 | 3300003203 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 6 | 3300003320 | Sugarcane root Sample H2 | Metagenome | Unclassified |
| 7 | 3300003322 | Sugarcane root Sample L2 | Metagenome | Unclassified |
| 8 | 3300003323 | Sugarcane root Sample H1 | Metagenome | Unclassified |
| 9 | 3300003354 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS | Metagenome | Endosphere |
| 10 | 3300003762 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 | Metagenome | Endosphere |
| 11 | 3300003771 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 | Metagenome | Endosphere |
| 12 | 3300003790 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 | Metagenome | Endosphere |
| 13 | 3300003791 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 | Metagenome | Endosphere |
| 14 | 3300003794 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 | Metagenome | Endosphere |
| 15 | 3300005262 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMF (version 2) (version 3) | Metagenome | Endosphere |
| 16 | 3300005289 | Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) | Metagenome | Rhizosphere |
| 17 | 3300005331 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG | Metagenome | Rhizosphere |
| 18 | 3300005337 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG | Metagenome | Rhizosphere |
| 19 | 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Metagenome | Rhizosphere |
| 20 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 21 | 3300005457 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG | Metagenome | Rhizosphere |
| 22 | 3300005458 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG | Metagenome | Rhizosphere |
| 23 | 3300005535 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG | Metagenome | Rhizosphere |
| 24 | 3300005539 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 | Metagenome | Rhizosphere |
| 25 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 26 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 27 | 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Metagenome | Rhizosphere |
| 28 | 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Metagenome | Rhizosphere |
| 29 | 3300005985 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 30 | 3300006237 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 31 | 3300006358 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 | Metagenome | Rhizosphere |
| 32 | 3300006931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 33 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 34 | 3300009545 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG | Metagenome | Rhizosphere |
| 35 | 3300010375 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG | Metagenome | Rhizosphere |
| 36 | 3300013104 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG | Metagenome | Rhizosphere |
| 37 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 38 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 39 | 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Metagenome | Rhizosphere |
| 40 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 41 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 42 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 43 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 44 | 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Metagenome | Rhizosphere |
| 45 | 3300015265 | Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG | Metagenome | Rhizosphere |
| 46 | 3300021384 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 | Metagenome | Unclassified |
| 47 | 3300025208 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) | Metagenome | Endosphere |
| 48 | 3300025242 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 49 | 3300025246 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) | Metagenome | Unclassified |
| 50 | 3300025254 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 51 | 3300025273 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMS_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 52 | 3300025284 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) | Metagenome | Endosphere |
| 53 | 3300025295 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) | Metagenome | Endosphere |
| 54 | 3300025297 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) | Metagenome | Endosphere |
| 55 | 3300025298 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 56 | 3300025302 | Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) | Metagenome | Endosphere |
| 57 | 3300025304 | Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) | Metagenome | Endosphere |
| 58 | 3300025904 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 59 | 3300025909 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 60 | 3300025913 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 61 | 3300025914 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 62 | 3300025921 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 63 | 3300025925 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 64 | 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 65 | 3300025949 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 66 | 3300026121 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 67 | 3300028573 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG | Metagenome | Rhizosphere |
| 68 | 3300028794 | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM | Metagenome | Unclassified |
| 69 | 3300031250 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG | Metagenome | Rhizosphere |
| 70 | 3300031251 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG | Metagenome | Rhizosphere |
| 71 | 3300031728 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC | Metagenome | Rhizosphere |
| 72 | 3300032004 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 | Metagenome | Rhizosphere |
| 73 | 3300037312 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 | Metagenome | Rhizosphere |
| 74 | 3300037418 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 | Metagenome | Rhizosphere |
| 75 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 76 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 77 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 78 | 3300044658 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R | Metagenome | Rhizosphere |
| 79 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 80 | 3300044765 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R | Metagenome | Rhizosphere |
| 81 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 82 | 3300046558 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere | Metagenome | Rhizosphere |
| 83 | 3300046616 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere | Metagenome | Rhizosphere |
| 84 | 3300047318 | Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere | Metagenome | Rhizosphere |
| 85 | 3300048904 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7w unlabeled | Metagenome | Rhizoplane |
| 86 | 3300048924 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 | Metagenome | Unclassified |
| 87 | 3300048929 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 | Metagenome | Unclassified |
| 88 | 3300049571 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 89 | 3300049581 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 90 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 91 | 3300049823 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 92 | 3300053088 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere | Metagenome | Endosphere |
| 93 | 3300053090 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co3_31_39 endosphere | Metagenome | Endosphere |
| 94 | 3300053108 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere | Metagenome | Endosphere |
| 95 | 3300053134 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere | Metagenome | Endosphere |
| 96 | 3300053136 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere | Metagenome | Endosphere |
| 97 | 3300053153 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere | Metagenome | Endosphere |
| 98 | 3300053156 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere | Metagenome | Endosphere |
| 99 | 3300055283 | Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23_RD_R2 endosphere | Metagenome | Endosphere |
| 100 | 2818991442 | Chitinophaga pinensis 1204 | Isolate | Unclassified |
| 101 | 2818991444 | Filimonas endophytica 3197 | Isolate | Unclassified |
| 102 | 2818991460 | Chitinophaga polysaccharea 1209 | Isolate | Unclassified |
| 103 | 2821136567 | Chitinophaga sancti 1232 | Isolate | Unclassified |
| 104 | 2881955468 | Edaphocola flava HME-24 | Isolate | Rhizosphere |
| 105 | 2883068021 | Chitinophaga rhizosphaerae T16R-86 | Isolate | Rhizosphere |
| 106 | 2884791551 | Chitinophaga oryzae 1310 | Isolate | Unclassified |
| 107 | 2896085136 | Chitinophaga alhagiae T22 | Isolate | Unclassified |
| 108 | 2896109856 | Chitinophaga sp. SYP-B3965 | Isolate | Rhizosphere |
| 109 | 2904467357 | Chitinophaga sancti 3198 | Isolate | Unclassified |
| 110 | 2911138879 | Spirosoma sp. KUDC1026 | Isolate | Rhizosphere |
| 111 | 2914759650 | Rhizosphaericola mali | Isolate | Rhizosphere |
| 112 | 2929154850 | Filimonas sp. R-72421 Hybrid assembly | Isolate | Unclassified |
| 113 | 2929177148 | Chitinophaga sp. R-72269 Hybrid assembly | Isolate | Unclassified |
| 114 | 2929239360 | Chitinophaga sp. R-73072 Hybrid assembly | Isolate | Unclassified |
| 115 | 2929921140 | Chitinophaga sp. R-72609 Hybrid assembly | Isolate | Unclassified |
| 116 | 2945977869 | Chitinophaga sp. W2I13 | Isolate | Rhizosphere |
| 117 | 2946013367 | Chitinophaga sp. W3I9 | Isolate | Rhizosphere |
| 118 | 8003151029 | Chitinophaga sp. GbtcB8 | Isolate | Unclassified |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 88.27 |
| Metatranscriptomes | 0 |
| Isolates | 11.73 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 19.75 |
| Nodule | 0 |
| Rhizoplane | 0.62 |
| Rhizosphere | 63.58 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 0.62 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0157371_10018016 | 3300013102 | Bacteria | 5231 |
| 2 | SwRhRL2b_contig_2879104 | 2162886007 | Bacteria | 104588 |
| 3 | JGI24740J21852_10015767 | 3300001979 | Bacteria | 2748 |
| 4 | JGI25154J39366_1000022 | 3300002738 | Bacteria | 219590 |
| 5 | JGI25406J46586_10008054 | 3300003203 | Bacteria | 4785 |
| 6 | rootH2_10007749 | 3300003320 | Bacteria | 18271 |
| 7 | rootH2_10084163 | 3300003320 | Bacteria | 8031 |
| 8 | rootH2_10132469 | 3300003320 | Bacteria | 5332 |
| 9 | rootL2_10223099 | 3300003322 | Bacteria | 5651 |
| 10 | rootH1_10046446 | 3300003323 | Bacteria | 8602 |
| 11 | rootH1_10099191 | 3300003323 | Bacteria | 21983 |
| 12 | rootH1_10140168 | 3300003323 | Bacteria | 13146 |
| 13 | JGI25160J50197_1000842 | 3300003354 | Bacteria | 16288 |
| 14 | JGI25160J50197_1004342 | 3300003354 | Bacteria | 6145 |
| 15 | Ga0055542_1004184 | 3300003762 | Bacteria | 3610 |
| 16 | Ga0055526_1010458 | 3300003771 | Bacteria | 4313 |
| 17 | Ga0055528_1000047 | 3300003790 | Bacteria | 95241 |
| 18 | Ga0055528_1001507 | 3300003790 | Bacteria | 14111 |
| 19 | Ga0055530_10000933 | 3300003791 | Bacteria | 23944 |
| 20 | Ga0055531_10000263 | 3300003794 | Bacteria | 55230 |
| 21 | Ga0065165_1000009 | 3300005262 | Bacteria | 327432 |
| 22 | Ga0065704_10070133 | 3300005289 | Bacteria | 1266035 |
| 23 | Ga0065704_10072373 | 3300005289 | Bacteria | 8646 |
| 24 | Ga0070670_100014761 | 3300005331 | Bacteria | 6705 |
| 25 | Ga0070682_100013901 | 3300005337 | Bacteria | 4642 |
| 26 | Ga0070671_100055757 | 3300005355 | Bacteria | 3288 |
| 27 | Ga0070659_100044238 | 3300005366 | Bacteria | 3485 |
| 28 | Ga0070662_100003927 | 3300005457 | Bacteria | 9326 |
| 29 | Ga0070681_10026346 | 3300005458 | Bacteria | 5845 |
| 30 | Ga0070684_100086006 | 3300005535 | Bacteria | 2789 |
| 31 | Ga0068853_100001836 | 3300005539 | Bacteria | 15605 |
| 32 | Ga0070665_100008485 | 3300005548 | Bacteria | 10395 |
| 33 | Ga0068856_100006212 | 3300005614 | Bacteria | 11722 |
| 34 | Ga0068859_100003163 | 3300005617 | Bacteria | 16740 |
| 35 | Ga0068863_100113726 | 3300005841 | Bacteria | 2578 |
| 36 | Ga0081539_10000338 | 3300005985 | Bacteria | 103849 |
| 37 | Ga0097621_100008810 | 3300006237 | Bacteria | 7291 |
| 38 | Ga0097621_100030461 | 3300006237 | Bacteria | 4271 |
| 39 | Ga0068871_100000027 | 3300006358 | Bacteria | 78588 |
| 40 | Ga0097620_100003163 | 3300006931 | Bacteria | 16740 |
| 41 | Ga0105240_10000131 | 3300009093 | Bacteria | 154386 |
| 42 | Ga0105237_10114812 | 3300009545 | Bacteria | 2686 |
| 43 | Ga0105239_10001470 | 3300010375 | Bacteria | 31340 |
| 44 | Ga0105239_10093504 | 3300010375 | Bacteria | 3320 |
| 45 | Ga0157371_10002349 | 3300013102 | Bacteria | 18109 |
| 46 | Ga0157371_10004923 | 3300013102 | Bacteria | 11478 |
| 47 | Ga0157371_10014745 | 3300013102 | Bacteria | 5882 |
| 48 | Ga0157371_10019668 | 3300013102 | Unclassified | 4975 |
| 49 | Ga0157371_10050608 | 3300013102 | Bacteria | 2952 |
| 50 | Ga0157370_10000457 | 3300013104 | Bacteria | 51070 |
| 51 | Ga0157370_10005273 | 3300013104 | Bacteria | 14521 |
| 52 | Ga0157370_10008635 | 3300013104 | Bacteria | 10965 |
| 53 | Ga0157370_10029230 | 3300013104 | Bacteria | 5413 |
| 54 | Ga0157369_10011906 | 3300013105 | Bacteria | 9878 |
| 55 | Ga0157369_10088058 | 3300013105 | Bacteria | 3314 |
| 56 | Ga0157369_10152635 | 3300013105 | Bacteria | 2441 |
| 57 | Ga0157374_10002078 | 3300013296 | Bacteria | 16854 |
| 58 | Ga0157378_10005431 | 3300013297 | Bacteria | 11178 |
| 59 | Ga0157378_10020514 | 3300013297 | Bacteria | 5810 |
| 60 | Ga0157378_10029063 | 3300013297 | Bacteria | 4879 |
| 61 | Ga0163162_10015673 | 3300013306 | Bacteria | 7406 |
| 62 | Ga0163162_10051422 | 3300013306 | Bacteria | 4135 |
| 63 | Ga0163162_10076409 | 3300013306 | Bacteria | 3411 |
| 64 | Ga0157372_10018418 | 3300013307 | Bacteria | 7506 |
| 65 | Ga0157372_10028467 | 3300013307 | Bacteria | 6098 |
| 66 | Ga0157372_10075929 | 3300013307 | Bacteria | 3793 |
| 67 | Ga0157372_10169678 | 3300013307 | Bacteria | 2524 |
| 68 | Ga0157375_10000229 | 3300013308 | Bacteria | 52257 |
| 69 | Ga0163163_10000494 | 3300014325 | Bacteria | 35512 |
| 70 | Ga0157379_10029500 | 3300014968 | Bacteria | 4877 |
| 71 | Ga0182005_1000582 | 3300015265 | Bacteria | 17962 |
| 72 | Ga0213876_10010331 | 3300021384 | Bacteria | 5011 |
| 73 | Ga0209436_102495 | 3300025208 | Bacteria | 5498 |
| 74 | Ga0209258_100326 | 3300025242 | Bacteria | 72066 |
| 75 | Ga0209646_1000003 | 3300025246 | Bacteria | 1160860 |
| 76 | Ga0209148_1000157 | 3300025254 | Bacteria | 142367 |
| 77 | Ga0209673_1000147 | 3300025273 | Bacteria | 149397 |
| 78 | Ga0209130_1000742 | 3300025284 | Bacteria | 28578 |
| 79 | Ga0209564_1007673 | 3300025295 | Bacteria | 5505 |
| 80 | Ga0209758_1011513 | 3300025297 | Bacteria | 5110 |
| 81 | Ga0209050_1000156 | 3300025298 | Bacteria | 158788 |
| 82 | Ga0207426_1000032 | 3300025302 | Bacteria | 457997 |
| 83 | Ga0207426_1000034 | 3300025302 | Bacteria | 454016 |
| 84 | Ga0207426_1000582 | 3300025302 | Bacteria | 48598 |
| 85 | Ga0207426_1001588 | 3300025302 | Bacteria | 18214 |
| 86 | Ga0209257_1000025 | 3300025304 | Bacteria | 724838 |
| 87 | Ga0209257_1001954 | 3300025304 | Bacteria | 22228 |
| 88 | Ga0207647_10006409 | 3300025904 | Bacteria | 8554 |
| 89 | Ga0207705_10055897 | 3300025909 | Bacteria | 2846 |
| 90 | Ga0207695_10000217 | 3300025913 | Bacteria | 155047 |
| 91 | Ga0207695_10004754 | 3300025913 | Bacteria | 18373 |
| 92 | Ga0207695_10006041 | 3300025913 | Bacteria | 15815 |
| 93 | Ga0207671_10000036 | 3300025914 | Bacteria | 236133 |
| 94 | Ga0207652_10000074 | 3300025921 | Bacteria | 108397 |
| 95 | Ga0207652_10000168 | 3300025921 | Bacteria | 71181 |
| 96 | Ga0207652_10024162 | 3300025921 | Bacteria | 5040 |
| 97 | Ga0207650_10027231 | 3300025925 | Bacteria | 4090 |
| 98 | Ga0207706_10001899 | 3300025933 | Bacteria | 20524 |
| 99 | Ga0207667_10040723 | 3300025949 | Bacteria | 4946 |
| 100 | Ga0207683_10105013 | 3300026121 | Bacteria | 2525 |
| 101 | Ga0265334_10017749 | 3300028573 | Bacteria | 2936 |
| 102 | Ga0307515_10000001 | 3300028794 | Bacteria | 4259510 |
| 103 | Ga0265331_10021305 | 3300031250 | Bacteria | 3320 |
| 104 | Ga0265327_10000022 | 3300031251 | Bacteria | 402724 |
| 105 | Ga0265327_10000168 | 3300031251 | Bacteria | 141392 |
| 106 | Ga0265327_10000440 | 3300031251 | Bacteria | 75453 |
| 107 | Ga0316578_10022497 | 3300031728 | Bacteria | 3515 |
| 108 | Ga0307414_10042313 | 3300032004 | Bacteria | 3094 |
| 109 | Ga0395899_0002260 | 3300037312 | Bacteria | 15752 |
| 110 | Ga0395899_0062691 | 3300037312 | Bacteria | 2737 |
| 111 | Ga0395900_0087852 | 3300037418 | Bacteria | 3195 |
| 112 | Ga0395905_0028889 | 3300037471 | Bacteria | 5227 |
| 113 | Ga0395905_0041835 | 3300037471 | Bacteria | 4300 |
| 114 | Ga0395901_0020295 | 3300038443 | Bacteria | 6802 |
| 115 | Ga0395901_0032832 | 3300038443 | Bacteria | 5355 |
| 116 | Ga0436365_0199602 | 3300039437 | Bacteria | 22071 |
| 117 | Ga0466972_0000002 | 3300044658 | Bacteria | 408005 |
| 118 | Ga0453684_0051276 | 3300044712 | Bacteria | 5413 |
| 119 | Ga0466970_0005349 | 3300044765 | Bacteria | 6368 |
| 120 | Ga0451576_0000002 | 3300045051 | Bacteria | 1670975 |
| 121 | Ga0451576_0004318 | 3300045051 | Bacteria | 18568 |
| 122 | Ga0495633_0000529 | 3300046558 | Bacteria | 38115 |
| 123 | Ga0495668_0000687 | 3300046616 | Bacteria | 40657 |
| 124 | Ga0495668_0000803 | 3300046616 | Bacteria | 36102 |
| 125 | Ga0495636_0000003 | 3300047318 | Bacteria | 132818 |
| 126 | Ga0496101_0032294 | 3300048904 | Bacteria | 3684 |
| 127 | Ga0496121_0000028 | 3300048924 | Bacteria | 439193 |
| 128 | Ga0496126_0018702 | 3300048929 | Bacteria | 6856 |
| 129 | Ga0501034_0000373 | 3300049571 | Bacteria | 76337 |
| 130 | Ga0501034_0002749 | 3300049571 | Bacteria | 20687 |
| 131 | Ga0501034_0028055 | 3300049571 | Bacteria | 5725 |
| 132 | Ga0501047_0027089 | 3300049581 | Bacteria | 5521 |
| 133 | Ga0501035_0018034 | 3300049822 | Bacteria | 6505 |
| 134 | Ga0501044_0016574 | 3300049823 | Bacteria | 7909 |
| 135 | Ga0500644_0000226 | 3300053088 | Bacteria | 32397 |
| 136 | Ga0500646_0001497 | 3300053090 | Bacteria | 6144 |
| 137 | Ga0500562_000058 | 3300053108 | Bacteria | 54762 |
| 138 | Ga0500658_0000890 | 3300053134 | Bacteria | 12242 |
| 139 | Ga0500559_0007253 | 3300053136 | Bacteria | 4925 |
| 140 | Ga0500616_0015906 | 3300053153 | Bacteria | 4293 |
| 141 | Ga0500622_0000484 | 3300053156 | Bacteria | 37287 |
| 142 | Ga0500622_0001788 | 3300053156 | Bacteria | 16416 |
| 143 | Ga0500661_001031 | 3300055283 | Bacteria | 5254 |
| 144 | 2819572778 | 2818991442 | Bacteria | 8318214 |
| 145 | 2819589627 | 2818991444 | Bacteria | 6968812 |
| 146 | 2819681145 | 2818991460 | Bacteria | 7595395 |
| 147 | 2821139809 | 2821136567 | Bacteria | 8080116 |
| 148 | 2881957577 | 2881955468 | Bacteria | 3545609 |
| 149 | 2883069408 | 2883068021 | Bacteria | 6192739 |
| 150 | 2884794942 | 2884791551 | Bacteria | 8511252 |
| 151 | 2896088139 | 2896085136 | Bacteria | 6129793 |
| 152 | 2896112128 | 2896109856 | Bacteria | 7140722 |
| 153 | 2904473440 | 2904467357 | Bacteria | 8057758 |
| 154 | 2911142408 | 2911138879 | Bacteria | 5811561 |
| 155 | 2914760580 | 2914759650 | Bacteria | 4701441 |
| 156 | 2929156301 | 2929154850 | Bacteria | 6753285 |
| 157 | 2929179422 | 2929177148 | Bacteria | 7883697 |
| 158 | 2929244709 | 2929239360 | Bacteria | 7745570 |
| 159 | 2929926872 | 2929921140 | Bacteria | 8649150 |
| 160 | 2945981833 | 2945977869 | Bacteria | 7777518 |
| 161 | 2946018766 | 2946013367 | Bacteria | 7766675 |
| 162 | 8003153990 | 8003151029 | Bacteria | 8187759 |
| 163 | Ga0157371_10018016 | |||
| 164 | SwRhRL2b_contig_2879104 | |||
| 165 | JGI24740J21852_10015767 | |||
| 166 | JGI25154J39366_1000022 | |||
| 167 | JGI25406J46586_10008054 | |||
| 168 | rootH2_10007749 | |||
| 169 | rootH2_10084163 | |||
| 170 | rootH2_10132469 | |||
| 171 | rootL2_10223099 | |||
| 172 | rootH1_10046446 | |||
| 173 | rootH1_10099191 | |||
| 174 | rootH1_10140168 | |||
| 175 | JGI25160J50197_1000842 | |||
| 176 | JGI25160J50197_1004342 | |||
| 177 | Ga0055542_1004184 | |||
| 178 | Ga0055526_1010458 | |||
| 179 | Ga0055528_1000047 | |||
| 180 | Ga0055528_1001507 | |||
| 181 | Ga0055530_10000933 | |||
| 182 | Ga0055531_10000263 | |||
| 183 | Ga0065165_1000009 | |||
| 184 | Ga0065704_10070133 | |||
| 185 | Ga0065704_10072373 | |||
| 186 | Ga0070670_100014761 | |||
| 187 | Ga0070682_100013901 | |||
| 188 | Ga0070671_100055757 | |||
| 189 | Ga0070659_100044238 | |||
| 190 | Ga0070662_100003927 | |||
| 191 | Ga0070681_10026346 | |||
| 192 | Ga0070684_100086006 | |||
| 193 | Ga0068853_100001836 | |||
| 194 | Ga0070665_100008485 | |||
| 195 | Ga0068856_100006212 | |||
| 196 | Ga0068859_100003163 | |||
| 197 | Ga0068863_100113726 | |||
| 198 | Ga0081539_10000338 | |||
| 199 | Ga0097621_100008810 | |||
| 200 | Ga0097621_100030461 | |||
| 201 | Ga0068871_100000027 | |||
| 202 | Ga0097620_100003163 | |||
| 203 | Ga0105240_10000131 | |||
| 204 | Ga0105237_10114812 | |||
| 205 | Ga0105239_10001470 | |||
| 206 | Ga0105239_10093504 | |||
| 207 | Ga0157371_10002349 | |||
| 208 | Ga0157371_10004923 | |||
| 209 | Ga0157371_10014745 | |||
| 210 | Ga0157371_10019668 | |||
| 211 | Ga0157371_10050608 | |||
| 212 | Ga0157370_10000457 | |||
| 213 | Ga0157370_10005273 | |||
| 214 | Ga0157370_10008635 | |||
| 215 | Ga0157370_10029230 | |||
| 216 | Ga0157369_10011906 | |||
| 217 | Ga0157369_10088058 | |||
| 218 | Ga0157369_10152635 | |||
| 219 | Ga0157374_10002078 | |||
| 220 | Ga0157378_10005431 | |||
| 221 | Ga0157378_10020514 | |||
| 222 | Ga0157378_10029063 | |||
| 223 | Ga0163162_10015673 | |||
| 224 | Ga0163162_10051422 | |||
| 225 | Ga0163162_10076409 | |||
| 226 | Ga0157372_10018418 | |||
| 227 | Ga0157372_10028467 | |||
| 228 | Ga0157372_10075929 | |||
| 229 | Ga0157372_10169678 | |||
| 230 | Ga0157375_10000229 | |||
| 231 | Ga0163163_10000494 | |||
| 232 | Ga0157379_10029500 | |||
| 233 | Ga0182005_1000582 | |||
| 234 | Ga0213876_10010331 | |||
| 235 | Ga0209436_102495 | |||
| 236 | Ga0209258_100326 | |||
| 237 | Ga0209646_1000003 | |||
| 238 | Ga0209148_1000157 | |||
| 239 | Ga0209673_1000147 | |||
| 240 | Ga0209130_1000742 | |||
| 241 | Ga0209564_1007673 | |||
| 242 | Ga0209758_1011513 | |||
| 243 | Ga0209050_1000156 | |||
| 244 | Ga0207426_1000032 | |||
| 245 | Ga0207426_1000034 | |||
| 246 | Ga0207426_1000582 | |||
| 247 | Ga0207426_1001588 | |||
| 248 | Ga0209257_1000025 | |||
| 249 | Ga0209257_1001954 | |||
| 250 | Ga0207647_10006409 | |||
| 251 | Ga0207705_10055897 | |||
| 252 | Ga0207695_10000217 | |||
| 253 | Ga0207695_10004754 | |||
| 254 | Ga0207695_10006041 | |||
| 255 | Ga0207671_10000036 | |||
| 256 | Ga0207652_10000074 | |||
| 257 | Ga0207652_10000168 | |||
| 258 | Ga0207652_10024162 | |||
| 259 | Ga0207650_10027231 | |||
| 260 | Ga0207706_10001899 | |||
| 261 | Ga0207667_10040723 | |||
| 262 | Ga0207683_10105013 | |||
| 263 | Ga0265334_10017749 | |||
| 264 | Ga0307515_10000001 | |||
| 265 | Ga0265331_10021305 | |||
| 266 | Ga0265327_10000022 | |||
| 267 | Ga0265327_10000168 | |||
| 268 | Ga0265327_10000440 | |||
| 269 | Ga0316578_10022497 | |||
| 270 | Ga0307414_10042313 | |||
| 271 | Ga0395899_0002260 | |||
| 272 | Ga0395899_0062691 | |||
| 273 | Ga0395900_0087852 | |||
| 274 | Ga0395905_0028889 | |||
| 275 | Ga0395905_0041835 | |||
| 276 | Ga0395901_0020295 | |||
| 277 | Ga0395901_0032832 | |||
| 278 | Ga0436365_0199602 | |||
| 279 | Ga0466972_0000002 | |||
| 280 | Ga0453684_0051276 | |||
| 281 | Ga0466970_0005349 | |||
| 282 | Ga0451576_0000002 | |||
| 283 | Ga0451576_0004318 | |||
| 284 | Ga0495633_0000529 | |||
| 285 | Ga0495668_0000687 | |||
| 286 | Ga0495668_0000803 | |||
| 287 | Ga0495636_0000003 | |||
| 288 | Ga0496101_0032294 | |||
| 289 | Ga0496121_0000028 | |||
| 290 | Ga0496126_0018702 | |||
| 291 | Ga0501034_0000373 | |||
| 292 | Ga0501034_0002749 | |||
| 293 | Ga0501034_0028055 | |||
| 294 | Ga0501047_0027089 | |||
| 295 | Ga0501035_0018034 | |||
| 296 | Ga0501044_0016574 | |||
| 297 | Ga0500644_0000226 | |||
| 298 | Ga0500646_0001497 | |||
| 299 | Ga0500562_000058 | |||
| 300 | Ga0500658_0000890 | |||
| 301 | Ga0500559_0007253 | |||
| 302 | Ga0500616_0015906 | |||
| 303 | Ga0500622_0000484 | |||
| 304 | Ga0500622_0001788 | |||
| 305 | Ga0500661_001031 | |||
| 306 | 2819572778 | |||
| 307 | 2819589627 | |||
| 308 | 2819681145 | |||
| 309 | 2821139809 | |||
| 310 | 2881957577 | |||
| 311 | 2883069408 | |||
| 312 | 2884794942 | |||
| 313 | 2896088139 | |||
| 314 | 2896112128 | |||
| 315 | 2904473440 | |||
| 316 | 2911142408 | |||
| 317 | 2914760580 | |||
| 318 | 2929156301 | |||
| 319 | 2929179422 | |||
| 320 | 2929244709 | |||
| 321 | 2929926872 | |||
| 322 | 2945981833 | |||
| 323 | 2946018766 | |||
| 324 | 8003153990 |
Family Sequences
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 4nnh-assembly2.cif.gz_B | structural basis for targeting the ribosomal protein s1 of mycobacterium tuberculosis by pyrazinamide | 0.962 | 648 | 721 |
| 4nng-assembly1.cif.gz_A | structural basis for targeting the ribosomal protein s1 of mycobacterium tuberculosis by pyrazinamide | 0.9487 | 647 | 721 |
| 4nnh-assembly1.cif.gz_A | structural basis for targeting the ribosomal protein s1 of mycobacterium tuberculosis by pyrazinamide | 0.9484 | 648 | 721 |
| 8dss-assembly1.cif.gz_B | x-ray crystal structure of geobacillus stearothermophilus comea | 0.9386 | 494 | 556 |
| 3aev-assembly1.cif.gz_A | crystal structure of a/eif2alpha-adim2p-rrna complex from pyrococcus horikoshii ot3 | 0.9287 | 647 | 723 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| 3bzkA04 | Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tex RuvX-like domain-like | 0.9745 | 500 | 630 | 1.10.150.310 |
| af_P9WH43_284_368_2.40.50.140 | Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins | 0.9655 | 647 | 721 | 2.40.50.140 |
| af_Q2FWJ5_314_440_1.10.3500.10 | Mainly Alpha;Orthogonal Bundle;Tex N-terminal region-like;Tex N-terminal region-like | 0.964 | 329 | 450 | 1.10.3500.10 |
| 3bzkA04 | Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;Tex RuvX-like domain-like | 0.9601 | 500 | 630 | 1.10.150.310 |
| af_A0A1D8PGR5_568_656_2.40.50.140 | Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins | 0.9589 | 641 | 719 | 2.40.50.140 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A4Q5UJI2-F1-model_v4 | RNA-binding transcriptional accessory protein | 0.989 | 291 | 634 |
GO:0003729
GO:0003735 GO:0006139 GO:0006412 |
| AF-A0A3D3W084-F1-model_v4 | RNA-binding transcriptional accessory protein | 0.9833 | 647 | 717 |
GO:0003729
GO:0003735 GO:0006412 |
| AF-A0A4Q5UJI2-F1-model_v4 | RNA-binding transcriptional accessory protein | 0.9833 | 291 | 634 |
GO:0003729
GO:0003735 GO:0006139 GO:0006412 |
| AF-T2JIH7-F1-model_v4 | Transcription accessory protein (S1 RNA-binding domain) | 0.9827 | 224 | 560 |
GO:0003729
GO:0003735 GO:0006139 GO:0006412 |
| AF-A0A378W1R8-F1-model_v4 | Transcriptional accessory protein Tex | 0.9825 | 373 | 534 |
GO:0003729
GO:0003735 GO:0005829 GO:0006139 GO:0006412 |