F237529

General Info

Members Datasets Scaffolds Average Seq Length
161 104 322 211

Family's Representative Sequence

Representative Sequence 3300041997|Ga0439431_0036736|Ga0439431_0036736_53_694
Length 213
Sequence MNLTLIRSCSISAGLAATAFLAGCANQGVQNPSGVPVTEMKADERGFVAGTGVESQDLVTVTDKMARSILGIPEIANATATPRVVLNPVVNETRFPINKDIFLTRIRTQLNSKANGKVRFLAREQNNMAALERERQMKQDGVVTASSDPNKVEFRGADFFLTGKLQGMSTRTSQGLSDYILYSFQLIDARTTEIIWEDSAEIKKQGLEDAAYR

Samples

Sample ID Description Type Environment
1 3300041997 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0317DE14Z082817_5607 Metagenome Rhizosphere
2 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
3 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
4 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
5 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
6 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
7 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
8 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
9 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
10 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
11 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
12 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
13 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
14 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
15 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
16 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
17 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
18 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
19 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
20 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
21 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
22 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
23 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
24 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
25 3300015265 Rhizosphere microbial communities from Sorghum bicolor, Mead, Nebraska, USA - 072115-103_1 MetaG Metagenome Rhizosphere
26 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
27 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026075 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
36 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
37 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
38 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
39 3300028654 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-22 metaG Metagenome Rhizosphere
40 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
41 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
42 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
43 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
44 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
45 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
46 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
47 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
48 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
49 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
50 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
51 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
52 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
53 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
54 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
55 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
56 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
57 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
58 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
59 3300035113 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_12 Metagenome Rhizosphere
60 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
61 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
62 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
63 3300035172 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_3 Metagenome Rhizosphere
64 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
65 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
66 3300035724 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_1 Metagenome Rhizosphere
67 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
68 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
69 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
70 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
71 3300041410 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z082817_5596 Metagenome Rhizosphere
72 3300041486 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_9 MetaG Metagenome Rhizoplane
73 3300042437 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z081617_5554 Metagenome Rhizosphere
74 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
75 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
76 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
77 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
78 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
79 3300046463 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL3_75_7 rhizosphere Metagenome Rhizosphere
80 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
81 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
82 3300046514 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 rhizosphere Metagenome Rhizosphere
83 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
84 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
85 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
86 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
87 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
88 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
89 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
90 3300046690 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL3_88_3 rhizosphere Metagenome Rhizosphere
91 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
92 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
93 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
94 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
95 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
96 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
97 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
98 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
99 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
100 3300049744 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_02 Metagenome Rhizosphere
101 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
102 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
103 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
104 2786546940 Opitutaceae bacterium EW11 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.14
Metatranscriptomes 0.62
Isolates 1.24

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0.62
Rhizosphere 98.14
Stem 0
Stem Tuber 0
Unclassified 20.5

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0439431_0036736 3300041997 Bacteria 1235
2 Ga0065707_10257846 3300005295 Unclassified 1106
3 Ga0068869_100000056 3300005334 Bacteria 49405
4 Ga0068868_100114978 3300005338 Bacteria 2190
5 Ga0070689_100026883 3300005340 Bacteria 4335
6 Ga0070689_100346425 3300005340 Bacteria 1245
7 Ga0070689_100448602 3300005340 Unclassified 1097
8 Ga0070675_100359821 3300005354 Unclassified 1292
9 Ga0070688_100029011 3300005365 Bacteria 3309
10 Ga0070688_100061353 3300005365 Unclassified 2377
11 Ga0070701_10029277 3300005438 Bacteria 2714
12 Ga0070711_100177504 3300005439 Bacteria 1628
13 Ga0070700_100287237 3300005441 Unclassified 1195
14 Ga0068867_100005193 3300005459 Bacteria 9188
15 Ga0070685_10033400 3300005466 Unclassified 2890
16 Ga0070686_100004003 3300005544 Bacteria 8103
17 Ga0070686_100201078 3300005544 Bacteria 1428
18 Ga0070704_100139904 3300005549 Unclassified 1888
19 Ga0070702_100311419 3300005615 Unclassified 1093
20 Ga0068863_100249513 3300005841 Bacteria 1714
21 Ga0097621_100035086 3300006237 Bacteria 4006
22 Ga0068871_100000997 3300006358 Bacteria 18958
23 Ga0075428_100003043 3300006844 Bacteria 18300
24 Ga0105240_10081168 3300009093 Bacteria 3986
25 Ga0111539_10037405 3300009094 Bacteria 5862
26 Ga0111539_10096756 3300009094 Bacteria 3468
27 Ga0105249_10186558 3300009553 Bacteria 2021
28 Ga0157374_10261728 3300013296 Bacteria 1704
29 Ga0163163_11587320 3300014325 Bacteria 715
30 Ga0182005_1087606 3300015265 Bacteria 864
31 Ga0206356_10207740 3300020070 Bacteria 3573
32 Ga0207695_10073373 3300025913 Bacteria 3487
33 Ga0207659_10505211 3300025926 Unclassified 1024
34 Ga0207670_10004129 3300025936 Bacteria 7777
35 Ga0207670_10048522 3300025936 Unclassified 2834
36 Ga0207704_10019989 3300025938 Bacteria 3532
37 Ga0207689_10000102 3300025942 Bacteria 69286
38 Ga0207712_10088562 3300025961 Unclassified 2273
39 Ga0207677_10087565 3300026023 Bacteria 2255
40 Ga0207708_10424399 3300026075 Unclassified 1103
41 Ga0207708_10591172 3300026075 Unclassified 939
42 Ga0207708_10895946 3300026075 Unclassified 768
43 Ga0207641_10406131 3300026088 Bacteria 1309
44 Ga0207648_10017585 3300026089 Bacteria 6495
45 Ga0265318_10021551 3300028577 Bacteria 2586
46 Ga0265323_10000075 3300028653 Bacteria 55923
47 Ga0265323_10004632 3300028653 Bacteria 5908
48 Ga0265323_10008308 3300028653 Bacteria 4286
49 Ga0265322_10001778 3300028654 Bacteria 6837
50 Ga0265338_10023833 3300028800 Bacteria 6275
51 Ga0265338_10026430 3300028800 Bacteria 5855
52 Ga0265324_10023646 3300029957 Bacteria 2188
53 Ga0265330_10031561 3300031235 Bacteria 2374
54 Ga0265330_10072605 3300031235 Bacteria 1488
55 Ga0265320_10043716 3300031240 Bacteria 2212
56 Ga0265320_10046061 3300031240 Bacteria 2140
57 Ga0265320_10079421 3300031240 Bacteria 1533
58 Ga0265325_10169850 3300031241 Bacteria 1021
59 Ga0265329_10035305 3300031242 Bacteria 1613
60 Ga0265316_10025391 3300031344 Bacteria 4945
61 Ga0265316_10076393 3300031344 Unclassified 2574
62 Ga0265316_10122063 3300031344 Bacteria 1967
63 Ga0265316_10411226 3300031344 Bacteria 973
64 Ga0307408_100000011 3300031548 Bacteria 414737
65 Ga0265314_10002089 3300031711 Bacteria 21038
66 Ga0265314_10006241 3300031711 Bacteria 10585
67 Ga0265314_10045982 3300031711 Bacteria 3082
68 Ga0265314_10267990 3300031711 Bacteria 972
69 Ga0265314_10327096 3300031711 Bacteria 851
70 Ga0265342_10010645 3300031712 Bacteria 6360
71 Ga0265342_10045132 3300031712 Bacteria 2654
72 Ga0265342_10089426 3300031712 Bacteria 1767
73 Ga0307413_10125148 3300031824 Bacteria 1749
74 Ga0307410_10000051 3300031852 Bacteria 41682
75 Ga0307410_10640588 3300031852 Unclassified 890
76 Ga0307407_10235132 3300031903 Bacteria 1247
77 Ga0307412_10136792 3300031911 Unclassified 1789
78 Ga0307412_10599877 3300031911 Bacteria 932
79 Ga0307409_100000096 3300031995 Bacteria 32336
80 Ga0307416_100001047 3300032002 Bacteria 14741
81 Ga0307414_10087584 3300032004 Unclassified 2302
82 Ga0307411_10066672 3300032005 Bacteria 2419
83 Ga0373951_0013402 3300035091 Bacteria 1843
84 Ga0373936_0170143 3300035113 Bacteria 952
85 Ga0373956_0184790 3300035119 Bacteria 986
86 Ga0373943_0026310 3300035170 Bacteria 2725
87 Ga0373946_0155412 3300035171 Bacteria 1070
88 Ga0373955_0070011 3300035172 Bacteria 1959
89 Ga0373935_0078144 3300035692 Bacteria 2146
90 Ga0373927_0003699 3300035695 Bacteria 10879
91 Ga0373933_0056480 3300035724 Bacteria 2357
92 Ga0373947_0004199 3300035725 Bacteria 8451
93 Ga0373937_0255388 3300036401 Unclassified 1652
94 Ga0373925_0003523 3300037068 Bacteria 12080
95 Ga0373925_0324308 3300037068 Unclassified 1247
96 Ga0395905_0060632 3300037471 Bacteria 3538
97 Ga0395905_0235090 3300037471 Bacteria 1713
98 Ga0395905_0675253 3300037471 Unclassified 935
99 Ga0439461_0041639 3300041410 Bacteria 994
100 Ga0451807_0025506 3300041486 Unclassified 887
101 Ga0439444_0050245 3300042437 Bacteria 845
102 Ga0451577_0054309 3300042876 Bacteria 3576
103 Ga0451577_0082306 3300042876 Bacteria 2871
104 Ga0451577_0231806 3300042876 Bacteria 1670
105 Ga0451577_0356499 3300042876 Unclassified 1327
106 Ga0451577_0812623 3300042876 Bacteria 844
107 Ga0453683_0000371 3300044673 Bacteria 53836
108 Ga0453684_0005414 3300044712 Bacteria 25289
109 Ga0453684_0109732 3300044712 Bacteria 3355
110 Ga0453684_0208227 3300044712 Bacteria 2275
111 Ga0453684_0278825 3300044712 Unclassified 1907
112 Ga0453684_0660373 3300044712 Bacteria 1140
113 Ga0453684_0726671 3300044712 Unclassified 1077
114 Ga0451576_0000269 3300045051 Bacteria 127079
115 Ga0451576_0008225 3300045051 Bacteria 12270
116 Ga0451576_0031628 3300045051 Bacteria 5641
117 Ga0451576_0096898 3300045051 Bacteria 3068
118 Ga0451576_0127038 3300045051 Unclassified 2657
119 Ga0451576_0186478 3300045051 Bacteria 2166
120 Ga0451576_0191754 3300045051 Bacteria 2134
121 Ga0451576_0203485 3300045051 Bacteria 2067
122 Ga0451576_0209393 3300045051 Bacteria 2036
123 Ga0451576_0216269 3300045051 Bacteria 2001
124 Ga0451576_0354466 3300045051 Bacteria 1536
125 Ga0451576_0409096 3300045051 Unclassified 1423
126 Ga0495592_0000071 3300046454 Bacteria 92699
127 Ga0495592_0421453 3300046454 Unclassified 842
128 Ga0495653_0090679 3300046463 Unclassified 2236
129 Ga0495664_0037582 3300046477 Bacteria 2858
130 Ga0495594_0304935 3300046499 Bacteria 907
131 Ga0495618_0001609 3300046514 Bacteria 15065
132 Ga0495628_0000197 3300046516 Bacteria 52941
133 Ga0495630_0066250 3300046517 Bacteria 2714
134 Ga0495630_0081751 3300046517 Bacteria 2438
135 Ga0495630_0123975 3300046517 Bacteria 1960
136 Ga0495666_0067333 3300046526 Bacteria 1706
137 Ga0495652_0063489 3300046529 Bacteria 3109
138 Ga0495640_0077423 3300046533 Unclassified 2217
139 Ga0495586_0006637 3300046535 Bacteria 6179
140 Ga0495586_0230424 3300046535 Bacteria 1054
141 Ga0495599_0011846 3300046678 Bacteria 5362
142 Ga0495624_0027849 3300046690 Bacteria 3696
143 Ga0495600_0143619 3300046809 Bacteria 1548
144 Ga0495581_0164765 3300047315 Bacteria 1296
145 Ga0495581_0179482 3300047315 Bacteria 1238
146 Ga0495674_0031820 3300047319 Bacteria 4788
147 Ga0495675_0069681 3300047444 Bacteria 2221
148 Ga0495684_0159066 3300047471 Unclassified 1686
149 Ga0501034_0098767 3300049571 Unclassified 2915
150 Ga0501034_0597147 3300049571 Unclassified 1010
151 Ga0501043_0119255 3300049579 Bacteria 2069
152 Ga0501046_0008488 3300049580 Bacteria 8946
153 Ga0501046_0215168 3300049580 Bacteria 1425
154 Ga0501047_0043461 3300049581 Bacteria 4341
155 Ga0501047_0063380 3300049581 Bacteria 3566
156 Ga0501083_0065007 3300049744 Bacteria 2430
157 Ga0501035_0004395 3300049822 Bacteria 13380
158 Ga0501044_0002736 3300049823 Bacteria 20050
159 Ga0501082_0152876 3300060353 Bacteria 2005
160 2788435472 2786546940 Bacteria 6396474
161 2788437925 2786546940 Bacteria 6396474
162 Ga0439431_0036736
163 Ga0065707_10257846
164 Ga0068869_100000056
165 Ga0068868_100114978
166 Ga0070689_100026883
167 Ga0070689_100346425
168 Ga0070689_100448602
169 Ga0070675_100359821
170 Ga0070688_100029011
171 Ga0070688_100061353
172 Ga0070701_10029277
173 Ga0070711_100177504
174 Ga0070700_100287237
175 Ga0068867_100005193
176 Ga0070685_10033400
177 Ga0070686_100004003
178 Ga0070686_100201078
179 Ga0070704_100139904
180 Ga0070702_100311419
181 Ga0068863_100249513
182 Ga0097621_100035086
183 Ga0068871_100000997
184 Ga0075428_100003043
185 Ga0105240_10081168
186 Ga0111539_10037405
187 Ga0111539_10096756
188 Ga0105249_10186558
189 Ga0157374_10261728
190 Ga0163163_11587320
191 Ga0182005_1087606
192 Ga0206356_10207740
193 Ga0207695_10073373
194 Ga0207659_10505211
195 Ga0207670_10004129
196 Ga0207670_10048522
197 Ga0207704_10019989
198 Ga0207689_10000102
199 Ga0207712_10088562
200 Ga0207677_10087565
201 Ga0207708_10424399
202 Ga0207708_10591172
203 Ga0207708_10895946
204 Ga0207641_10406131
205 Ga0207648_10017585
206 Ga0265318_10021551
207 Ga0265323_10000075
208 Ga0265323_10004632
209 Ga0265323_10008308
210 Ga0265322_10001778
211 Ga0265338_10023833
212 Ga0265338_10026430
213 Ga0265324_10023646
214 Ga0265330_10031561
215 Ga0265330_10072605
216 Ga0265320_10043716
217 Ga0265320_10046061
218 Ga0265320_10079421
219 Ga0265325_10169850
220 Ga0265329_10035305
221 Ga0265316_10025391
222 Ga0265316_10076393
223 Ga0265316_10122063
224 Ga0265316_10411226
225 Ga0307408_100000011
226 Ga0265314_10002089
227 Ga0265314_10006241
228 Ga0265314_10045982
229 Ga0265314_10267990
230 Ga0265314_10327096
231 Ga0265342_10010645
232 Ga0265342_10045132
233 Ga0265342_10089426
234 Ga0307413_10125148
235 Ga0307410_10000051
236 Ga0307410_10640588
237 Ga0307407_10235132
238 Ga0307412_10136792
239 Ga0307412_10599877
240 Ga0307409_100000096
241 Ga0307416_100001047
242 Ga0307414_10087584
243 Ga0307411_10066672
244 Ga0373951_0013402
245 Ga0373936_0170143
246 Ga0373956_0184790
247 Ga0373943_0026310
248 Ga0373946_0155412
249 Ga0373955_0070011
250 Ga0373935_0078144
251 Ga0373927_0003699
252 Ga0373933_0056480
253 Ga0373947_0004199
254 Ga0373937_0255388
255 Ga0373925_0003523
256 Ga0373925_0324308
257 Ga0395905_0060632
258 Ga0395905_0235090
259 Ga0395905_0675253
260 Ga0439461_0041639
261 Ga0451807_0025506
262 Ga0439444_0050245
263 Ga0451577_0054309
264 Ga0451577_0082306
265 Ga0451577_0231806
266 Ga0451577_0356499
267 Ga0451577_0812623
268 Ga0453683_0000371
269 Ga0453684_0005414
270 Ga0453684_0109732
271 Ga0453684_0208227
272 Ga0453684_0278825
273 Ga0453684_0660373
274 Ga0453684_0726671
275 Ga0451576_0000269
276 Ga0451576_0008225
277 Ga0451576_0031628
278 Ga0451576_0096898
279 Ga0451576_0127038
280 Ga0451576_0186478
281 Ga0451576_0191754
282 Ga0451576_0203485
283 Ga0451576_0209393
284 Ga0451576_0216269
285 Ga0451576_0354466
286 Ga0451576_0409096
287 Ga0495592_0000071
288 Ga0495592_0421453
289 Ga0495653_0090679
290 Ga0495664_0037582
291 Ga0495594_0304935
292 Ga0495618_0001609
293 Ga0495628_0000197
294 Ga0495630_0066250
295 Ga0495630_0081751
296 Ga0495630_0123975
297 Ga0495666_0067333
298 Ga0495652_0063489
299 Ga0495640_0077423
300 Ga0495586_0006637
301 Ga0495586_0230424
302 Ga0495599_0011846
303 Ga0495624_0027849
304 Ga0495600_0143619
305 Ga0495581_0164765
306 Ga0495581_0179482
307 Ga0495674_0031820
308 Ga0495675_0069681
309 Ga0495684_0159066
310 Ga0501034_0098767
311 Ga0501034_0597147
312 Ga0501043_0119255
313 Ga0501046_0008488
314 Ga0501046_0215168
315 Ga0501047_0043461
316 Ga0501047_0063380
317 Ga0501083_0065007
318 Ga0501035_0004395
319 Ga0501044_0002736
320 Ga0501082_0152876
321 2788435472
322 2788437925

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF13036

LpoB

Peptidoglycan-synthase activator LpoB

57

202

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
5v1d-assembly1.cif.gz_D complex structure of the bovine perk luminal domain and its substrate peptide 0.8867 170 199
5v1d-assembly2.cif.gz_C complex structure of the bovine perk luminal domain and its substrate peptide 0.8656 170 199
4yzs-assembly1.cif.gz_A-2 crystal structures reveal transient perk luminal domain tetramerization in er stress signaling 0.8655 170 199
5v1d-assembly1.cif.gz_A complex structure of the bovine perk luminal domain and its substrate peptide 0.8516 152 201
5sv7-assembly1.cif.gz_A the crystal structure of a chaperone 0.7692 151 199
ID Description Score Start End Superfamily
af_Q58658_50_389_3.30.2170.10 Alpha Beta;2-Layer Sandwich;archaeoglobus fulgidus dsm 4304 fold;archaeoglobus fulgidus dsm 4304 superfamily 0.7362 147 201 3.30.2170.10
af_Q9VDA3_36_198_2.70.220.10 Mainly Beta;Distorted Sandwich;Ganglioside M2 Activator Protein; Chain: A,;Ganglioside GM2 activator 0.7202 171 201 2.70.220.10
af_F1R4N4_1_615_2.60.40.1730 Mainly Beta;Sandwich;Immunoglobulin-like;tricorn interacting facor f3 domain 0.678 161 201 2.60.40.1730
af_A0A1D6ERI0_395_507_2.60.40.1670 Mainly Beta;Sandwich;Immunoglobulin-like;beta-sandwich domain of Sec23/24 0.6723 171 201 2.60.40.1670
4fsoA01 Mainly Beta;Beta Barrel;Porin;Porin 0.6625 161 201 2.40.160.10
ID Description Score Start End GO Terms
AF-R5KXK8-F1-model_v4 deleted 0.9128 153 199
AF-A0A836UA83-F1-model_v4 Penicillin-binding protein activator LpoB 0.9074 52 201 GO:0009252
GO:0030234
GO:0031241
AF-A0A1E3Z6N1-F1-model_v4 deleted 0.9054 51 200
AF-A0A6I1K6W6-F1-model_v4 Penicillin-binding protein activator LpoB 0.9039 36 207
AF-A0A6I1K6W6-F1-model_v4 Penicillin-binding protein activator LpoB 0.8988 36 207

Map