F237086

General Info

Members Datasets Scaffolds Average Seq Length
161 128 322 114

Family's Representative Sequence

Representative Sequence 3300020082|Ga0206353_11580789|Ga0206353_115807892
Length 110
Sequence MAKQMTEMLKGTLEGIVLAILSEQPAYGYEITARLRDEGFADIVEGTVYALLIRVDVTKVPSEKGPPRKVYSVNAAGAEYLDEFWRSWTFLAERIGRLHQHERDEKEAGS

Samples

Sample ID Description Type Environment
1 3300020082 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
2 3300002738 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA Metagenome Unclassified
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300005356 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG Metagenome Rhizosphere
5 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
6 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
7 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
8 3300009036 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG Metagenome Rhizosphere
9 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
10 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
11 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
12 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
13 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
14 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
15 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
16 3300020069 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
17 3300020078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-5 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
18 3300020080 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-4 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
19 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
20 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
21 3300025258 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMS (SPAdes) (version 3) Metagenome Endosphere
22 3300025728 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
25 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
32 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
33 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
34 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
35 3300031824 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-2 Metagenome Rhizosphere
36 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
37 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
38 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
39 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
40 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
41 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
42 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
43 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
44 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
45 3300041405 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116DE14Z080117_5414 Metagenome Rhizosphere
46 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
47 3300041443 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_2 MetaG Metagenome Rhizoplane
48 3300041451 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR17_3 MetaG Metagenome Rhizoplane
49 3300041498 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_5 MetaG Metagenome Unclassified
50 3300042002 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z082817_5616 Metagenome Rhizosphere
51 3300042004 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612WE14Z082817_5619 Metagenome Rhizosphere
52 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
53 3300042008 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z062817_5219 Metagenome Rhizosphere
54 3300042016 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z071817_5357 Metagenome Rhizosphere
55 3300042122 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0926D_E14_082716_2496 Metagenome Rhizosphere
56 3300042146 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0714D_E14_080116_2979 Metagenome Rhizosphere
57 3300042185 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0515W_E14_080116_2592 Metagenome Rhizosphere
58 3300042435 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z082817_5613 Metagenome Rhizosphere
59 3300042438 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311FE14Z081617_5533 Metagenome Rhizosphere
60 3300042439 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612FE14Z071817_5363 Metagenome Rhizosphere
61 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
62 3300042531 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0117D_E14_082716_2253 Metagenome Rhizosphere
63 3300042993 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0821LE14Z071817_5372 Metagenome Rhizosphere
64 3300044735 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA1R Metagenome Rhizosphere
65 3300044765 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA2R Metagenome Rhizosphere
66 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
67 3300046453 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co3_8_57 rhizosphere Metagenome Rhizosphere
68 3300046472 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL1_35_33 rhizosphere Metagenome Rhizosphere
69 3300046473 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL3_85_26 rhizosphere Metagenome Rhizosphere
70 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
71 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
72 3300046531 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL2_41_30 rhizosphere Metagenome Rhizosphere
73 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
74 3300046536 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 rhizosphere Metagenome Rhizosphere
75 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
76 3300046559 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL2_50_20 rhizosphere Metagenome Rhizosphere
77 3300046663 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL3_77_6 rhizosphere Metagenome Rhizosphere
78 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
79 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
80 3300046691 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 rhizosphere Metagenome Rhizosphere
81 3300046809 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL2_67_23 rhizosphere Metagenome Rhizosphere
82 3300047315 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-13-CL2_39_29 rhizosphere Metagenome Rhizosphere
83 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
84 3300048903 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_7v unlabeled Metagenome Rhizoplane
85 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
86 3300048908 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2d N15 Metagenome Rhizoplane
87 3300048915 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 Metagenome Rhizoplane
88 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
89 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
90 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
91 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
92 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
93 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
94 3300048925 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8x unlabeled Metagenome Unclassified
95 3300048926 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_8y unlabeled Metagenome Unclassified
96 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
97 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
98 3300048929 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_6e N15 Metagenome Unclassified
99 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
100 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
101 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
102 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
103 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
104 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
105 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
106 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere
107 2585428094 Herbiconiux sp. YR403 Isolate Rhizosphere
108 2643221542 Microbacterium sp. Root1433D1 Isolate Unclassified
109 2643221572 Leifsonia sp. Root60 Isolate Unclassified
110 2643221630 Microbacterium sp. Root322 Isolate Unclassified
111 2643221632 Leifsonia sp. Root112D2 Isolate Unclassified
112 2643221669 Leifsonia sp. Root1293 Isolate Unclassified
113 2643221724 Microbacterium sp. Root280D1 Isolate Unclassified
114 2728369380 Microbacterium sp. 1.5R Isolate Rhizosphere
115 2747842429 Microbacterium sp. WCS2014-259 Isolate Unclassified
116 2775506735 Arthrobacter sp. S95 1704 Isolate Unclassified
117 2811994871 Arthrobacter sp. SLBN-179 Isolate Unclassified
118 2852663356 Microbacterium sp. JAI119 Isolate Rhizosphere
119 2857723135 Microbacterium sp. R-72356 Isolate Unclassified
120 2939598168 Arthrobacter sp. 754 Isolate Rhizosphere
121 2945968032 Microbacterium murale W2I7 Isolate Rhizosphere
122 2946024296 Arthrobacter woluwensis W4I2 Isolate Rhizosphere
123 2946041624 Microbacterium natoriense W4I9-1 Isolate Rhizosphere
124 2946059875 Arthrobacter sp. SLBN-112 Isolate Rhizosphere
125 2946080515 Microbacterium sp. W4I20 Isolate Rhizosphere
126 2953998280 Pseudarthrobacter sp. W1I19 Isolate Rhizosphere
127 8004182704 Microbacterium paraoxydans ku-mp Isolate Unclassified
128 8054107350 Arthrobacter rhizosphaerae CCNWLXL 1-35 Isolate Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 83.23
Metatranscriptomes 3.11
Isolates 13.66

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 6.21
Nodule 0
Rhizoplane 5.59
Rhizosphere 68.32
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0206353_11580789 3300020082 Bacteria 972
2 JGI25154J39366_1002816 3300002738 Bacteria 4130
3 rootH2_10031089 3300003320 Bacteria 8216
4 Ga0070674_101922494 3300005356 Bacteria 538
5 Ga0070667_100242349 3300005367 Bacteria 1610
6 Ga0075364_10024550 3300006051 Bacteria 3830
7 Ga0075364_10283726 3300006051 Bacteria 1127
8 Ga0075367_10537816 3300006178 Bacteria 742
9 Ga0105244_10178507 3300009036 Bacteria 1008
10 Ga0105240_10002540 3300009093 Bacteria 29265
11 Ga0105245_10726273 3300009098 Bacteria 1028
12 Ga0105238_10089430 3300009551 Bacteria 3066
13 Ga0157371_11371797 3300013102 Bacteria 548
14 Ga0157369_10501168 3300013105 Bacteria 1256
15 Ga0157369_10516592 3300013105 Bacteria 1235
16 Ga0157372_12750527 3300013307 Bacteria 564
17 Ga0157375_12843949 3300013308 Bacteria 579
18 Ga0197907_10559440 3300020069 Bacteria 986
19 Ga0206352_10221135 3300020078 Bacteria 1174
20 Ga0206350_10238178 3300020080 Bacteria 741
21 Ga0224712_10696123 3300022467 Bacteria 500
22 Ga0209646_1000030 3300025246 Bacteria 384216
23 Ga0209129_1027735 3300025258 Bacteria 967
24 Ga0207655_1095347 3300025728 Bacteria 1037
25 Ga0207705_10940970 3300025909 Bacteria 669
26 Ga0207695_10033015 3300025913 Bacteria 5655
27 Ga0207694_10021843 3300025924 Bacteria 4852
28 Ga0207669_10147924 3300025937 Bacteria 1641
29 Ga0207661_11786720 3300025944 Bacteria 560
30 Ga0207668_11765960 3300025972 Bacteria 558
31 Ga0207658_10211957 3300025986 Bacteria 1624
32 Ga0207677_11176538 3300026023 Bacteria 701
33 Ga0307408_100015791 3300031548 Bacteria 5031
34 Ga0307408_101479923 3300031548 Bacteria 641
35 Ga0316576_10398770 3300031727 Bacteria 1019
36 Ga0316578_10032669 3300031728 Bacteria 2975
37 Ga0307405_10117806 3300031731 Bacteria 1811
38 Ga0307405_10193271 3300031731 Bacteria 1471
39 Ga0307413_10084939 3300031824 Bacteria 2042
40 Ga0307413_10364597 3300031824 Bacteria 1120
41 Ga0307410_10069568 3300031852 Bacteria 2435
42 Ga0307406_10000435 3300031901 Bacteria 24366
43 Ga0307406_10064358 3300031901 Bacteria 2380
44 Ga0307406_10160535 3300031901 Bacteria 1615
45 Ga0307407_11664233 3300031903 Bacteria 507
46 Ga0307412_10065373 3300031911 Bacteria 2461
47 Ga0307409_100454351 3300031995 Bacteria 1237
48 Ga0307409_101060900 3300031995 Bacteria 830
49 Ga0307409_102441440 3300031995 Bacteria 552
50 Ga0307416_100517581 3300032002 Bacteria 1261
51 Ga0307416_100772248 3300032002 Bacteria 1055
52 Ga0307414_10446593 3300032004 Bacteria 1133
53 Ga0316574_0035712 3300035398 Bacteria 3039
54 Ga0316584_0008249 3300036712 Bacteria 7171
55 Ga0439438_063205 3300041405 Bacteria 925
56 Ga0439438_127713 3300041405 Bacteria 610
57 Ga0439465_0019640 3300041413 Bacteria 2113
58 Ga0439465_0345337 3300041413 Bacteria 562
59 Ga0451789_0134093 3300041443 Bacteria 845
60 Ga0451789_1245603 3300041443 Bacteria 708
61 Ga0451791_0525116 3300041451 Bacteria 1448
62 Ga0451841_0260611 3300041498 Bacteria 724
63 Ga0439442_000270 3300042002 Bacteria 12664
64 Ga0439442_006466 3300042002 Bacteria 2353
65 Ga0439445_0088466 3300042004 Bacteria 871
66 Ga0439448_0025669 3300042005 Bacteria 1849
67 Ga0439450_004633 3300042008 Bacteria 2362
68 Ga0439463_002010 3300042016 Bacteria 5284
69 Ga0450920_011477 3300042122 Bacteria 1651
70 Ga0450907_000815 3300042146 Bacteria 7687
71 Ga0450909_038267 3300042185 Bacteria 736
72 Ga0439434_0000397 3300042435 Bacteria 12414
73 Ga0439459_0162701 3300042438 Bacteria 590
74 Ga0439464_0039033 3300042439 Bacteria 1349
75 Ga0439460_0043263 3300042461 Bacteria 1330
76 Ga0439460_0330685 3300042461 Bacteria 536
77 Ga0450918_000574 3300042531 Bacteria 7815
78 Ga0439440_0107195 3300042993 Bacteria 765
79 Ga0466968_0366376 3300044735 Bacteria 702
80 Ga0466970_0008859 3300044765 Bacteria 5072
81 Ga0466970_0043783 3300044765 Bacteria 2383
82 Ga0466960_0015060 3300044901 Bacteria 3328
83 Ga0466960_0324667 3300044901 Bacteria 872
84 Ga0495627_000557 3300046453 Bacteria 30619
85 Ga0495580_0051463 3300046472 Bacteria 2912
86 Ga0495582_0110201 3300046473 Bacteria 1546
87 Ga0495582_0330959 3300046473 Bacteria 877
88 Ga0495664_0001467 3300046477 Bacteria 12499
89 Ga0495630_0656188 3300046517 Bacteria 803
90 Ga0495665_0024932 3300046531 Bacteria 3213
91 Ga0495665_0460622 3300046531 Bacteria 642
92 Ga0495586_0026544 3300046535 Bacteria 3099
93 Ga0495587_0034941 3300046536 Bacteria 3029
94 Ga0495645_0000314 3300046543 Bacteria 34802
95 Ga0495645_0211264 3300046543 Bacteria 1310
96 Ga0495667_0000209 3300046559 Bacteria 39226
97 Ga0495667_0529797 3300046559 Bacteria 737
98 Ga0495635_0327369 3300046663 Bacteria 1025
99 Ga0495588_0055554 3300046674 Bacteria 2043
100 Ga0495588_0288481 3300046674 Bacteria 865
101 Ga0495657_0516673 3300046675 Bacteria 695
102 Ga0495670_0078512 3300046691 Bacteria 1679
103 Ga0495600_0004319 3300046809 Bacteria 8498
104 Ga0495600_0206176 3300046809 Bacteria 1261
105 Ga0495581_0003074 3300047315 Bacteria 9544
106 Ga0495675_0037273 3300047444 Bacteria 3096
107 Ga0496100_0669644 3300048903 Bacteria 809
108 Ga0496104_0521753 3300048907 Bacteria 1099
109 Ga0496105_0067927 3300048908 Bacteria 2944
110 Ga0496112_0727265 3300048915 Bacteria 920
111 Ga0496114_0453716 3300048917 Bacteria 1135
112 Ga0496115_1151180 3300048918 Bacteria 585
113 Ga0496117_0000084 3300048920 Bacteria 214308
114 Ga0496118_0210000 3300048921 Bacteria 1143
115 Ga0496119_0047528 3300048922 Bacteria 2669
116 Ga0496119_0405845 3300048922 Bacteria 649
117 Ga0496121_0003923 3300048924 Bacteria 20623
118 Ga0496122_0009222 3300048925 Bacteria 10443
119 Ga0496122_0035149 3300048925 Bacteria 4085
120 Ga0496122_0156462 3300048925 Bacteria 1398
121 Ga0496122_0280906 3300048925 Bacteria 910
122 Ga0496123_0010117 3300048926 Bacteria 8386
123 Ga0496124_0216992 3300048927 Bacteria 1442
124 Ga0496125_0024008 3300048928 Bacteria 5616
125 Ga0496125_0026244 3300048928 Bacteria 5313
126 Ga0496125_0051777 3300048928 Bacteria 3382
127 Ga0496125_0158722 3300048928 Bacteria 1540
128 Ga0496126_0001669 3300048929 Bacteria 33303
129 Ga0496126_0005378 3300048929 Bacteria 14626
130 Ga0501034_0001761 3300049571 Bacteria 27727
131 Ga0501036_1238363 3300049572 Bacteria 608
132 nmdc:mga00v17_340867_c1 3300050491 Bacteria 974
133 nmdc:mga00v17_62633_c1 3300050491 Bacteria 2289
134 nmdc:mga00v17_764521_c1 3300050491 Bacteria 617
135 nmdc:mga06z11_491427_c1 3300050494 Bacteria 743
136 nmdc:mga0qj67_1595927_c1 3300050509 Bacteria 500
137 nmdc:mga0sz30_518428_c1 3300050516 Bacteria 537
138 Ga0500635_0000016 3300053080 Bacteria 124879
139 Ga0466962_0128651 3300061719 Bacteria 1223
140 2587861827 2585428094 Bacteria 3604039
141 2643735413 2643221542 Bacteria 3563959
142 2643877708 2643221572 Bacteria 3614809
143 2644172255 2643221630 Bacteria 3601215
144 2644183768 2643221632 Bacteria 3406696
145 2644384763 2643221669 Bacteria 3611286
146 2644678537 2643221724 Bacteria 3593515
147 2730228038 2728369380 Bacteria 3620317
148 2747955181 2747842429 Bacteria 3914386
149 2775655580 2775506735 Bacteria 4556596
150 2812319966 2811994871 Bacteria 4497550
151 2852667070 2852663356 Bacteria 4090475
152 2857725462 2857723135 Bacteria 4217853
153 2939601509 2939598168 Bacteria 4687164
154 2945970614 2945968032 Bacteria 4111363
155 2946025780 2946024296 Bacteria 3508095
156 2946042321 2946041624 Bacteria 4191385
157 2946061530 2946059875 Bacteria 4386623
158 2946082897 2946080515 Bacteria 4310960
159 2953998831 2953998280 Bacteria 4812144
160 8004182912 8004182704 Bacteria 3391155
161 8054108865 8054107350 Bacteria 5022511
162 Ga0206353_11580789
163 JGI25154J39366_1002816
164 rootH2_10031089
165 Ga0070674_101922494
166 Ga0070667_100242349
167 Ga0075364_10024550
168 Ga0075364_10283726
169 Ga0075367_10537816
170 Ga0105244_10178507
171 Ga0105240_10002540
172 Ga0105245_10726273
173 Ga0105238_10089430
174 Ga0157371_11371797
175 Ga0157369_10501168
176 Ga0157369_10516592
177 Ga0157372_12750527
178 Ga0157375_12843949
179 Ga0197907_10559440
180 Ga0206352_10221135
181 Ga0206350_10238178
182 Ga0224712_10696123
183 Ga0209646_1000030
184 Ga0209129_1027735
185 Ga0207655_1095347
186 Ga0207705_10940970
187 Ga0207695_10033015
188 Ga0207694_10021843
189 Ga0207669_10147924
190 Ga0207661_11786720
191 Ga0207668_11765960
192 Ga0207658_10211957
193 Ga0207677_11176538
194 Ga0307408_100015791
195 Ga0307408_101479923
196 Ga0316576_10398770
197 Ga0316578_10032669
198 Ga0307405_10117806
199 Ga0307405_10193271
200 Ga0307413_10084939
201 Ga0307413_10364597
202 Ga0307410_10069568
203 Ga0307406_10000435
204 Ga0307406_10064358
205 Ga0307406_10160535
206 Ga0307407_11664233
207 Ga0307412_10065373
208 Ga0307409_100454351
209 Ga0307409_101060900
210 Ga0307409_102441440
211 Ga0307416_100517581
212 Ga0307416_100772248
213 Ga0307414_10446593
214 Ga0316574_0035712
215 Ga0316584_0008249
216 Ga0439438_063205
217 Ga0439438_127713
218 Ga0439465_0019640
219 Ga0439465_0345337
220 Ga0451789_0134093
221 Ga0451789_1245603
222 Ga0451791_0525116
223 Ga0451841_0260611
224 Ga0439442_000270
225 Ga0439442_006466
226 Ga0439445_0088466
227 Ga0439448_0025669
228 Ga0439450_004633
229 Ga0439463_002010
230 Ga0450920_011477
231 Ga0450907_000815
232 Ga0450909_038267
233 Ga0439434_0000397
234 Ga0439459_0162701
235 Ga0439464_0039033
236 Ga0439460_0043263
237 Ga0439460_0330685
238 Ga0450918_000574
239 Ga0439440_0107195
240 Ga0466968_0366376
241 Ga0466970_0008859
242 Ga0466970_0043783
243 Ga0466960_0015060
244 Ga0466960_0324667
245 Ga0495627_000557
246 Ga0495580_0051463
247 Ga0495582_0110201
248 Ga0495582_0330959
249 Ga0495664_0001467
250 Ga0495630_0656188
251 Ga0495665_0024932
252 Ga0495665_0460622
253 Ga0495586_0026544
254 Ga0495587_0034941
255 Ga0495645_0000314
256 Ga0495645_0211264
257 Ga0495667_0000209
258 Ga0495667_0529797
259 Ga0495635_0327369
260 Ga0495588_0055554
261 Ga0495588_0288481
262 Ga0495657_0516673
263 Ga0495670_0078512
264 Ga0495600_0004319
265 Ga0495600_0206176
266 Ga0495581_0003074
267 Ga0495675_0037273
268 Ga0496100_0669644
269 Ga0496104_0521753
270 Ga0496105_0067927
271 Ga0496112_0727265
272 Ga0496114_0453716
273 Ga0496115_1151180
274 Ga0496117_0000084
275 Ga0496118_0210000
276 Ga0496119_0047528
277 Ga0496119_0405845
278 Ga0496121_0003923
279 Ga0496122_0009222
280 Ga0496122_0035149
281 Ga0496122_0156462
282 Ga0496122_0280906
283 Ga0496123_0010117
284 Ga0496124_0216992
285 Ga0496125_0024008
286 Ga0496125_0026244
287 Ga0496125_0051777
288 Ga0496125_0158722
289 Ga0496126_0001669
290 Ga0496126_0005378
291 Ga0501034_0001761
292 Ga0501036_1238363
293 nmdc:mga00v17_340867_c1
294 nmdc:mga00v17_62633_c1
295 nmdc:mga00v17_764521_c1
296 nmdc:mga06z11_491427_c1
297 nmdc:mga0qj67_1595927_c1
298 nmdc:mga0sz30_518428_c1
299 Ga0500635_0000016
300 Ga0466962_0128651
301 2587861827
302 2643735413
303 2643877708
304 2644172255
305 2644183768
306 2644384763
307 2644678537
308 2730228038
309 2747955181
310 2775655580
311 2812319966
312 2852667070
313 2857725462
314 2939601509
315 2945970614
316 2946025780
317 2946042321
318 2946061530
319 2946082897
320 2953998831
321 8004182912
322 8054108865

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF03551

PadR

Transcriptional regulator PadR-like family

17

83

0.94

Structural Annotation

Top 5 Hits

ID Description Score Start End
6abt-assembly1.cif.gz_A crystal structure of transcription factor from listeria monocytogenes 0.9469 9 104
4esf-assembly1.cif.gz_A-2 crystal structure of padr-like transcriptional regulator (bce3449) from bacillus cereus strain atcc 10987 0.9381 6 105
7wjp-assembly1.cif.gz_A-2 structure of padr-like protein from listeria monocytogenes 0.9232 8 104
6abt-assembly1.cif.gz_A crystal structure of transcription factor from listeria monocytogenes 0.9194 9 104
5zqh-assembly1.cif.gz_A-2 crystal structure of streptococcus transcriptional regulator 0.909 8 105
ID Description Score Start End Superfamily
4esfA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9381 6 105 1.10.10.10
3hhhA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9092 5 103 1.10.10.10
5zqhA00 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.909 8 105 1.10.10.10
af_Q57807_1_92_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.9075 14 96 1.10.10.10
af_I6X7F9_1_101_1.10.10.10 Mainly Alpha;Orthogonal Bundle;Arc Repressor Mutant, subunit A;Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain 0.905 7 101 1.10.10.10
ID Description Score Start End GO Terms
AF-A0A2S5X0Y0-F1-model_v4 PadR family transcriptional regulator 1.001 11 104
AF-I4A864-F1-model_v4 Putative transcriptional regulator 0.9912 9 104
AF-A0A7X0EX43-F1-model_v4 PadR family transcriptional regulator PadR 0.9892 9 104
AF-A0A2N3FLT7-F1-model_v4 PadR family transcriptional regulator 0.9847 1 83
AF-A0A350VG21-F1-model_v4 deleted 0.9832 9 104

Map