F235365

General Info

Members Datasets Scaffolds Average Seq Length
160 119 157 230

Family's Representative Sequence

Representative Sequence 3300046516|Ga0495628_0227825|Ga0495628_0227825_86_907
Length 273
Sequence MALTRSVIKKVAGQKKNVAVKLPSPDCNMVVTRLKLCDELVHDFLRSVKQRILVVDDEPEAVELVEFNLKQAGYAVTTAADGAEALQKARTQTPDLIVLDVMLPEMDGFEICKTLRLEAATARTPILMLTAKAAEIDRVLGLELGADDYLTKPFSPRELMLRIKKILARGQAGEKPKDQLRFGDLHIDVPRHISTWKGKPIELTATEFKLLTILAQRSGRVQSRDQLLRDVWEYDSLIDTRTVDTHMRRLREKIGAAAKHLDTVRGVGYRFVE

Samples

Sample ID Description Type Environment
1 2842694124 Methylopila sp. R-72369 Isolate Unclassified
2 2919450847 Ancylobacter sp. 3268 Isolate Rhizosphere
3 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
4 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
5 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
6 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
7 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
8 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
9 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
10 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
11 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
12 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
13 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
14 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
15 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
16 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
17 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
18 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
19 3300006163 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG Metagenome Rhizosphere
20 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
21 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
22 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
23 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
24 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
25 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
26 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
27 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
29 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
30 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
31 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
32 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
33 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
35 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
36 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
37 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
38 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
39 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
40 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
41 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
42 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
44 3300028577 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-21 metaG Metagenome Rhizosphere
45 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
46 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
47 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
48 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
49 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
50 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
51 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
52 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
53 3300034816 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_3 Metagenome Rhizosphere
54 3300035083 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_17 Metagenome Rhizosphere
55 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
56 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
57 3300035089 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_2 Metagenome Rhizosphere
58 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
59 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
60 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
61 3300035116 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_3 Metagenome Rhizosphere
62 3300035207 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_16 Metagenome Rhizosphere
63 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
64 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
65 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
66 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
67 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
68 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
69 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
70 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
71 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
72 3300041458 Perennial ryegrass root microbial community from Lincoln, Canterbury, New Zealand - RGR18_10 MetaG Metagenome Rhizoplane
73 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
74 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
75 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
76 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
77 3300046454 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-198-CL2_38_5 rhizosphere Metagenome Rhizosphere
78 3300046476 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 rhizosphere Metagenome Rhizosphere
79 3300046477 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 rhizosphere Metagenome Rhizosphere
80 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
81 3300046516 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-448-CL1_35_3 rhizosphere Metagenome Rhizosphere
82 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
83 3300046526 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-4579-CL1_25_23 rhizosphere Metagenome Rhizosphere
84 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
85 3300046533 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere Metagenome Rhizosphere
86 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
87 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
88 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
89 3300046674 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL3_93_10 rhizosphere Metagenome Rhizosphere
90 3300046675 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL2_57_20 rhizosphere Metagenome Rhizosphere
91 3300046683 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-904-CL3_91_3 rhizosphere Metagenome Rhizosphere
92 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
93 3300047319 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL1_34_16 rhizosphere Metagenome Rhizosphere
94 3300047322 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWA-24-3-CL2_69_25 rhizosphere Metagenome Rhizosphere
95 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
96 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
97 3300048906 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1d N15 Metagenome Rhizoplane
98 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
99 3300048922 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_2e N15 Metagenome Unclassified
100 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
101 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
102 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
103 3300049577 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 Metagenome Rhizosphere
104 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
105 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
106 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
107 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
108 3300049591 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_03 Metagenome Rhizosphere
109 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
110 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
111 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
112 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
113 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
114 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
115 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
116 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
117 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
118 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
119 8001845381 Ancylobacter sonchi VKM B-3145 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 98.12
Metatranscriptomes 0
Isolates 1.88

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 2.5
Rhizosphere 93.12
Stem 0
Stem Tuber 0
Unclassified 4.38

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0070690_100210486 3300005330 Bacteria 1357
2 Ga0070689_100098118 3300005340 Bacteria 2317
3 Ga0070687_100115722 3300005343 Bacteria 1525
4 Ga0070668_100363751 3300005347 Bacteria 1227
5 Ga0070701_10029971 3300005438 Bacteria 2688
6 Ga0070705_100402212 3300005440 Bacteria 1014
7 Ga0070681_10223041 3300005458 Bacteria 1800
8 Ga0070699_100901054 3300005518 Bacteria 810
9 Ga0070684_100782643 3300005535 Bacteria 891
10 Ga0070686_100008079 3300005544 Bacteria 5878
11 Ga0070704_100001090 3300005549 Bacteria 14087
12 Ga0068855_100073837 3300005563 Bacteria 3962
13 Ga0068857_100262060 3300005577 Bacteria 1587
14 Ga0068856_100004280 3300005614 Bacteria 14240
15 Ga0068856_100275069 3300005614 Bacteria 1700
16 Ga0068859_101150271 3300005617 Bacteria 854
17 Ga0070717_10112450 3300006028 Bacteria 2324
18 Ga0070715_10168542 3300006163 Bacteria 1088
19 Ga0070716_100157891 3300006173 Bacteria 1466
20 Ga0097621_100371344 3300006237 Bacteria 1276
21 Ga0068871_100714213 3300006358 Bacteria 919
22 Ga0075428_100000838 3300006844 Bacteria 32194
23 Ga0075430_100254282 3300006846 Bacteria 1456
24 Ga0075431_100430905 3300006847 Bacteria 1317
25 Ga0075436_100467443 3300006914 Bacteria 920
26 Ga0097620_101150471 3300006931 Bacteria 854
27 Ga0105240_10526212 3300009093 Bacteria 1311
28 Ga0111539_10056083 3300009094 Bacteria 4684
29 Ga0111539_10064918 3300009094 Bacteria 4316
30 Ga0111539_10250077 3300009094 Bacteria 2064
31 Ga0111539_10417426 3300009094 Bacteria 1563
32 Ga0105238_10110817 3300009551 Bacteria 2725
33 Ga0157378_10374714 3300013297 Bacteria 1396
34 Ga0157375_11326102 3300013308 Bacteria 847
35 Ga0207662_10025826 3300025918 Bacteria 3385
36 Ga0207694_10083032 3300025924 Bacteria 2519
37 Ga0207700_10085457 3300025928 Bacteria 2476
38 Ga0207670_10181986 3300025936 Bacteria 1584
39 Ga0207670_10500788 3300025936 Bacteria 986
40 Ga0207711_10376631 3300025941 Bacteria 1317
41 Ga0207667_10035984 3300025949 Bacteria 5309
42 Ga0207702_10008719 3300026078 Bacteria 8550
43 Ga0207702_10160723 3300026078 Bacteria 2051
44 Ga0207641_10784421 3300026088 Bacteria 942
45 Ga0207428_10158045 3300027907 Bacteria 1722
46 Ga0268266_10047754 3300028379 Bacteria 3669
47 Ga0265337_1001960 3300028556 Bacteria 9783
48 Ga0265318_10088173 3300028577 Bacteria 1143
49 Ga0307515_10002868 3300028794 Bacteria 36682
50 Ga0265338_10000382 3300028800 Bacteria 79298
51 Ga0265338_10023819 3300028800 Bacteria 6277
52 Ga0265338_10051105 3300028800 Bacteria 3726
53 Ga0265338_10058714 3300028800 Bacteria 3393
54 Ga0265338_10063824 3300028800 Bacteria 3209
55 Ga0265338_10078566 3300028800 Bacteria 2783
56 Ga0265338_10114653 3300028800 Bacteria 2162
57 Ga0265338_10211376 3300028800 Bacteria 1456
58 Ga0265324_10001648 3300029957 Bacteria 12344
59 Ga0265324_10017895 3300029957 Bacteria 2573
60 Ga0265320_10005912 3300031240 Bacteria 7785
61 Ga0265320_10018367 3300031240 Bacteria 3853
62 Ga0265340_10000750 3300031247 Bacteria 18436
63 Ga0265340_10052053 3300031247 Bacteria 1981
64 Ga0265340_10100330 3300031247 Bacteria 1346
65 Ga0265327_10000215 3300031251 Bacteria 119243
66 Ga0265327_10005000 3300031251 Bacteria 11367
67 Ga0265316_10138746 3300031344 Bacteria 1828
68 Ga0265316_10186516 3300031344 Bacteria 1543
69 Ga0265313_10002545 3300031595 Bacteria 15618
70 Ga0373930_0000030 3300034816 Bacteria 12736
71 Ga0373926_0161775 3300035083 Bacteria 855
72 Ga0373928_0000187 3300035084 Bacteria 11870
73 Ga0373929_0000156 3300035085 Bacteria 11897
74 Ga0373944_0000153 3300035089 Bacteria 13651
75 Ga0373949_0001893 3300035090 Bacteria 5665
76 Ga0373951_0002105 3300035091 Bacteria 5095
77 Ga0373932_0000008 3300035112 Bacteria 167879
78 Ga0373945_0115058 3300035116 Bacteria 1064
79 Ga0373942_0057774 3300035207 Bacteria 1105
80 Ga0373962_0000070 3300035242 Bacteria 22511
81 Ga0373931_0000011 3300035691 Bacteria 304643
82 Ga0373935_0014248 3300035692 Bacteria 4799
83 Ga0373935_0127565 3300035692 Bacteria 1706
84 Ga0373927_0000848 3300035695 Bacteria 23328
85 Ga0373927_0173842 3300035695 Bacteria 1412
86 Ga0373947_0005143 3300035725 Bacteria 7662
87 Ga0373937_0046211 3300036401 Bacteria 3981
88 Ga0373925_0002040 3300037068 Bacteria 16664
89 Ga0373925_0004599 3300037068 Bacteria 10425
90 Ga0400489_07029 3300039093 Unclassified 1197
91 Ga0436365_0463559 3300039437 Bacteria 4344
92 Ga0451798_0935083 3300041458 Bacteria 775
93 Ga0451577_0024871 3300042876 Bacteria 5440
94 Ga0453683_0373151 3300044673 Bacteria 918
95 Ga0453684_0002234 3300044712 Bacteria 48025
96 Ga0453684_0009887 3300044712 Bacteria 16488
97 Ga0453684_0200099 3300044712 Bacteria 2329
98 Ga0453684_0659361 3300044712 Bacteria 1141
99 Ga0451576_0041847 3300045051 Bacteria 4841
100 Ga0451576_0043714 3300045051 Bacteria 4726
101 Ga0451576_0335302 3300045051 Bacteria 1583
102 Ga0451576_0352996 3300045051 Bacteria 1540
103 Ga0451576_0816156 3300045051 Bacteria 979
104 Ga0495592_0000008 3300046454 Bacteria 175382
105 Ga0495662_0059451 3300046476 Bacteria 1846
106 Ga0495662_0306971 3300046476 Bacteria 780
107 Ga0495664_0038291 3300046477 Bacteria 2831
108 Ga0495594_0164464 3300046499 Bacteria 1262
109 Ga0495628_0000046 3300046516 Bacteria 97902
110 Ga0495628_0155517 3300046516 Bacteria 1740
111 Ga0495628_0227825 3300046516 Bacteria 1398
112 Ga0495630_0003164 3300046517 Bacteria 11426
113 Ga0495630_0058197 3300046517 Bacteria 2897
114 Ga0495630_0301296 3300046517 Bacteria 1225
115 Ga0495666_0022537 3300046526 Bacteria 3119
116 Ga0495652_0173426 3300046529 Bacteria 1662
117 Ga0495640_0014036 3300046533 Bacteria 6077
118 Ga0495586_0001308 3300046535 Bacteria 13867
119 Ga0495622_0017323 3300046557 Bacteria 3354
120 Ga0495634_0081012 3300046642 Bacteria 2124
121 Ga0495588_0035285 3300046674 Bacteria 2534
122 Ga0495657_0310174 3300046675 Bacteria 939
123 Ga0495658_0014352 3300046683 Bacteria 4047
124 Ga0495658_0195995 3300046683 Bacteria 1257
125 Ga0495604_0350723 3300047317 Bacteria 981
126 Ga0495674_0129037 3300047319 Bacteria 2131
127 Ga0495680_0503859 3300047322 Bacteria 821
128 Ga0495684_0192697 3300047471 Bacteria 1506
129 Ga0495684_0353653 3300047471 Bacteria 1042
130 Ga0496102_0039168 3300048905 Bacteria 4281
131 Ga0496103_0043022 3300048906 Bacteria 2780
132 Ga0496109_0266206 3300048912 Bacteria 1615
133 Ga0496119_0001286 3300048922 Bacteria 31059
134 Ga0496125_0000102 3300048928 Bacteria 201692
135 Ga0501033_0010596 3300049570 Bacteria 7069
136 Ga0501034_0206019 3300049571 Bacteria 1923
137 Ga0501041_0096948 3300049577 Bacteria 1823
138 Ga0501046_0217401 3300049580 Bacteria 1416
139 Ga0501070_0024480 3300049586 Bacteria 5063
140 Ga0501071_0103161 3300049587 Bacteria 2104
141 Ga0501072_0143413 3300049588 Bacteria 1905
142 Ga0501075_0173967 3300049591 Bacteria 1643
143 Ga0501077_0265271 3300049593 Bacteria 1092
144 Ga0501079_0317641 3300049741 Bacteria 1219
145 Ga0501080_0017414 3300049742 Bacteria 6645
146 Ga0501044_0000272 3300049823 Bacteria 65745
147 Ga0501044_0023919 3300049823 Bacteria 6493
148 Ga0501045_0128618 3300049824 Bacteria 1882
149 nmdc:mga09592_148143_c1 3300050508 Bacteria 2024
150 nmdc:mga09592_577477_c1 3300050508 Bacteria 964
151 nmdc:mga08y16_129843_c1 3300050511 Bacteria 2621
152 nmdc:mga08y16_632627_c1 3300050511 Bacteria 1076
153 nmdc:mga08y16_71691_c2 3300050511 Bacteria 3161
154 nmdc:mga08x19_231627_c1 3300050514 Bacteria 1271
155 nmdc:mga08x19_423559_c1 3300050514 Bacteria 935
156 nmdc:mga0a205_675533_c1 3300050515 Bacteria 883
157 Ga0501082_0124275 3300060353 Bacteria 2237

MSA Aligner

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049577 Ga0501041_0096948 Ga0501041_0096948_355_1074 208
2 3300049580 Ga0501046_0217401 Ga0501046_0217401_63_782 208
3 3300049587 Ga0501071_0103161 Ga0501071_0103161_590_1309 208
4 3300049588 Ga0501072_0143413 Ga0501072_0143413_726_1445 208
5 3300049591 Ga0501075_0173967 Ga0501075_0173967_348_1067 208
6 3300049593 Ga0501077_0265271 Ga0501077_0265271_176_895 208
7 3300049741 Ga0501079_0317641 Ga0501079_0317641_310_1029 208
8 3300049824 Ga0501045_0128618 Ga0501045_0128618_765_1484 208
9 3300060353 Ga0501082_0124275 Ga0501082_0124275_215_934 208
10 3300028800 Ga0265338_10058714 Ga0265338_100587144 219
11 3300028800 Ga0265338_10211376 Ga0265338_102113762 219
12 3300031247 Ga0265340_10100330 Ga0265340_101003302 219
13 3300031251 Ga0265327_10000215 Ga0265327_1000021556 219
14 3300031251 Ga0265327_10005000 Ga0265327_100050002 219
15 3300035207 Ga0373942_0057774 Ga0373942_0057774_360_1019 219
16 3300035692 Ga0373935_0127565 Ga0373935_0127565_201_860 219
17 3300046499 Ga0495594_0164464 Ga0495594_0164464_590_1252 220
18 3300044712 Ga0453684_0009887 Ga0453684_0009887_2739_3404 221
19 3300045051 Ga0451576_0043714 Ga0451576_0043714_396_1067 221
20 3300009094 Ga0111539_10417426 Ga0111539_104174261 222
21 3300049586 Ga0501070_0024480 Ga0501070_0024480_263_940 222
22 3300049823 Ga0501044_0023919 Ga0501044_0023919_5609_6286 222
23 iso_pu_bacteria 2842694124 2842696478 222
24 iso_pu_bacteria 2919450847 2919455413 222
25 iso_pu_bacteria 8001845381 8001849573 222
26 3300039093 Ga0400489_07029 Ga0400489_07029_279_986 223
27 3300041458 Ga0451798_0935083 Ga0451798_0935083_78_755 223
28 3300028379 Ga0268266_10047754 Ga0268266_100477544 224
29 3300028794 Ga0307515_10002868 Ga0307515_1000286834 224
30 3300046674 Ga0495588_0035285 Ga0495588_0035285_1182_1880 224
31 3300048905 Ga0496102_0039168 Ga0496102_0039168_2546_3244 224
32 3300048906 Ga0496103_0043022 Ga0496103_0043022_1345_2043 224
33 3300048922 Ga0496119_0001286 Ga0496119_0001286_12137_12856 224
34 3300005458 Ga0070681_10223041 Ga0070681_102230412 226
35 3300005563 Ga0068855_100073837 Ga0068855_1000738372 226
36 3300005577 Ga0068857_100262060 Ga0068857_1002620602 226
37 3300005614 Ga0068856_100004280 Ga0068856_1000042804 226
38 3300005614 Ga0068856_100275069 Ga0068856_1002750691 226
39 3300006163 Ga0070715_10168542 Ga0070715_101685422 226
40 3300009093 Ga0105240_10526212 Ga0105240_105262122 226
41 3300009094 Ga0111539_10056083 Ga0111539_100560835 226
42 3300009551 Ga0105238_10110817 Ga0105238_101108172 226
43 3300013308 Ga0157375_11326102 Ga0157375_113261021 226
44 3300025924 Ga0207694_10083032 Ga0207694_100830323 226
45 3300025936 Ga0207670_10500788 Ga0207670_105007881 226
46 3300025941 Ga0207711_10376631 Ga0207711_103766312 226
47 3300025949 Ga0207667_10035984 Ga0207667_100359842 226
48 3300026078 Ga0207702_10008719 Ga0207702_100087192 226
49 3300026078 Ga0207702_10160723 Ga0207702_101607232 226
50 3300028556 Ga0265337_1001960 Ga0265337_10019609 226
51 3300028577 Ga0265318_10088173 Ga0265318_100881732 226
52 3300028800 Ga0265338_10000382 Ga0265338_100003828 226
53 3300028800 Ga0265338_10023819 Ga0265338_100238196 226
54 3300028800 Ga0265338_10078566 Ga0265338_100785663 226
55 3300028800 Ga0265338_10114653 Ga0265338_101146532 226
56 3300029957 Ga0265324_10017895 Ga0265324_100178952 226
57 3300031240 Ga0265320_10005912 Ga0265320_100059124 226
58 3300031240 Ga0265320_10018367 Ga0265320_100183672 226
59 3300031247 Ga0265340_10000750 Ga0265340_1000075011 226
60 3300031247 Ga0265340_10052053 Ga0265340_100520532 226
61 3300031344 Ga0265316_10186516 Ga0265316_101865162 226
62 3300031595 Ga0265313_10002545 Ga0265313_1000254515 226
63 3300034816 Ga0373930_0000030 Ga0373930_0000030_2019_2723 226
64 3300035084 Ga0373928_0000187 Ga0373928_0000187_9537_10241 226
65 3300035085 Ga0373929_0000156 Ga0373929_0000156_7999_8703 226
66 3300035089 Ga0373944_0000153 Ga0373944_0000153_1194_1898 226
67 3300035090 Ga0373949_0001893 Ga0373949_0001893_2081_2785 226
68 3300035091 Ga0373951_0002105 Ga0373951_0002105_4015_4719 226
69 3300035112 Ga0373932_0000008 Ga0373932_0000008_51427_52131 226
70 3300035242 Ga0373962_0000070 Ga0373962_0000070_8598_9302 226
71 3300035691 Ga0373931_0000011 Ga0373931_0000011_186647_187351 226
72 3300035695 Ga0373927_0173842 Ga0373927_0173842_142_864 226
73 3300037068 Ga0373925_0004599 Ga0373925_0004599_7018_7722 226
74 3300042876 Ga0451577_0024871 Ga0451577_0024871_2411_3091 226
75 3300044712 Ga0453684_0002234 Ga0453684_0002234_34973_35653 226
76 3300044712 Ga0453684_0200099 Ga0453684_0200099_623_1327 226
77 3300045051 Ga0451576_0335302 Ga0451576_0335302_684_1364 226
78 3300046476 Ga0495662_0306971 Ga0495662_0306971_48_740 226
79 3300046516 Ga0495628_0227825 Ga0495628_0227825_86_907 226
80 3300046517 Ga0495630_0301296 Ga0495630_0301296_449_1129 226
81 3300046557 Ga0495622_0017323 Ga0495622_0017323_1663_2343 226
82 3300047317 Ga0495604_0350723 Ga0495604_0350723_29_721 226
83 3300047322 Ga0495680_0503859 Ga0495680_0503859_97_789 226
84 3300048912 Ga0496109_0266206 Ga0496109_0266206_29_724 226
85 3300048928 Ga0496125_0000102 Ga0496125_0000102_85394_86089 226
86 3300049570 Ga0501033_0010596 Ga0501033_0010596_3237_3917 226
87 3300049742 Ga0501080_0017414 Ga0501080_0017414_2700_3404 226
88 3300049823 Ga0501044_0000272 Ga0501044_0000272_53175_53855 226
89 3300005330 Ga0070690_100210486 Ga0070690_1002104862 227
90 3300005340 Ga0070689_100098118 Ga0070689_1000981182 227
91 3300005343 Ga0070687_100115722 Ga0070687_1001157222 227
92 3300005347 Ga0070668_100363751 Ga0070668_1003637512 227
93 3300005438 Ga0070701_10029971 Ga0070701_100299712 227
94 3300005440 Ga0070705_100402212 Ga0070705_1004022121 227
95 3300005518 Ga0070699_100901054 Ga0070699_1009010541 227
96 3300005535 Ga0070684_100782643 Ga0070684_1007826431 227
97 3300005544 Ga0070686_100008079 Ga0070686_1000080793 227
98 3300005549 Ga0070704_100001090 Ga0070704_1000010905 227
99 3300005617 Ga0068859_101150271 Ga0068859_1011502711 227
100 3300006028 Ga0070717_10112450 Ga0070717_101124503 227
101 3300006173 Ga0070716_100157891 Ga0070716_1001578911 227
102 3300006237 Ga0097621_100371344 Ga0097621_1003713442 227
103 3300006358 Ga0068871_100714213 Ga0068871_1007142131 227
104 3300006844 Ga0075428_100000838 Ga0075428_1000008385 227
105 3300006846 Ga0075430_100254282 Ga0075430_1002542822 227
106 3300006847 Ga0075431_100430905 Ga0075431_1004309052 227
107 3300006914 Ga0075436_100467443 Ga0075436_1004674431 227
108 3300006931 Ga0097620_101150471 Ga0097620_1011504711 227
109 3300009094 Ga0111539_10064918 Ga0111539_100649183 227
110 3300009094 Ga0111539_10250077 Ga0111539_102500772 227
111 3300013297 Ga0157378_10374714 Ga0157378_103747142 227
112 3300025918 Ga0207662_10025826 Ga0207662_100258263 227
113 3300025928 Ga0207700_10085457 Ga0207700_100854573 227
114 3300025936 Ga0207670_10181986 Ga0207670_101819862 227
115 3300026088 Ga0207641_10784421 Ga0207641_107844211 227
116 3300027907 Ga0207428_10158045 Ga0207428_101580453 227
117 3300028800 Ga0265338_10051105 Ga0265338_100511054 227
118 3300028800 Ga0265338_10063824 Ga0265338_100638243 227
119 3300029957 Ga0265324_10001648 Ga0265324_100016485 227
120 3300031344 Ga0265316_10138746 Ga0265316_101387462 227
121 3300035083 Ga0373926_0161775 Ga0373926_0161775_21_704 227
122 3300035116 Ga0373945_0115058 Ga0373945_0115058_156_839 227
123 3300035692 Ga0373935_0014248 Ga0373935_0014248_875_1558 227
124 3300035695 Ga0373927_0000848 Ga0373927_0000848_5328_6011 227
125 3300035725 Ga0373947_0005143 Ga0373947_0005143_4732_5415 227
126 3300036401 Ga0373937_0046211 Ga0373937_0046211_1588_2283 227
127 3300037068 Ga0373925_0002040 Ga0373925_0002040_8920_9603 227
128 3300039437 Ga0436365_0463559 Ga0436365_0463559_1562_2251 227
129 3300044673 Ga0453683_0373151 Ga0453683_0373151_119_802 227
130 3300044712 Ga0453684_0659361 Ga0453684_0659361_35_775 227
131 3300045051 Ga0451576_0041847 Ga0451576_0041847_2670_3371 227
132 3300045051 Ga0451576_0352996 Ga0451576_0352996_19_705 227
133 3300045051 Ga0451576_0816156 Ga0451576_0816156_212_895 227
134 3300046454 Ga0495592_0000008 Ga0495592_0000008_132332_133039 227
135 3300046476 Ga0495662_0059451 Ga0495662_0059451_41_748 227
136 3300046477 Ga0495664_0038291 Ga0495664_0038291_345_1052 227
137 3300046516 Ga0495628_0000046 Ga0495628_0000046_90251_90958 227
138 3300046516 Ga0495628_0155517 Ga0495628_0155517_451_1140 227
139 3300046517 Ga0495630_0003164 Ga0495630_0003164_3593_4276 227
140 3300046517 Ga0495630_0058197 Ga0495630_0058197_660_1367 227
141 3300046526 Ga0495666_0022537 Ga0495666_0022537_717_1400 227
142 3300046529 Ga0495652_0173426 Ga0495652_0173426_937_1644 227
143 3300046533 Ga0495640_0014036 Ga0495640_0014036_4288_4995 227
144 3300046535 Ga0495586_0001308 Ga0495586_0001308_11928_12635 227
145 3300046642 Ga0495634_0081012 Ga0495634_0081012_314_997 227
146 3300046675 Ga0495657_0310174 Ga0495657_0310174_42_743 227
147 3300046683 Ga0495658_0014352 Ga0495658_0014352_3305_3988 227
148 3300046683 Ga0495658_0195995 Ga0495658_0195995_285_992 227
149 3300047319 Ga0495674_0129037 Ga0495674_0129037_565_1272 227
150 3300047471 Ga0495684_0192697 Ga0495684_0192697_381_1076 227
151 3300047471 Ga0495684_0353653 Ga0495684_0353653_277_966 227
152 3300049571 Ga0501034_0206019 Ga0501034_0206019_811_1527 227
153 3300050508 nmdc:mga09592_148143_c1 nmdc:mga09592_148143_c1_751_1452 227
154 3300050508 nmdc:mga09592_577477_c1 nmdc:mga09592_577477_c1_31_714 227
155 3300050511 nmdc:mga08y16_129843_c1 nmdc:mga08y16_129843_c1_459_1142 227
156 3300050511 nmdc:mga08y16_632627_c1 nmdc:mga08y16_632627_c1_17_700 227
157 3300050511 nmdc:mga08y16_71691_c2 nmdc:mga08y16_71691_c2_1879_2562 227
158 3300050514 nmdc:mga08x19_231627_c1 nmdc:mga08x19_231627_c1_403_1128 227
159 3300050514 nmdc:mga08x19_423559_c1 nmdc:mga08x19_423559_c1_57_755 227
160 3300050515 nmdc:mga0a205_675533_c1 nmdc:mga0a205_675533_c1_88_789 227

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00072

Response_reg

Response regulator receiver domain

52

164

0.97

PF00486

Trans_reg_C

Transcriptional regulatory protein, C terminal

198

271

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
1nxt-assembly1.cif.gz_A-2 micarec ph 4.0 0.9941 3 121
2a9r-assembly1.cif.gz_A-2 rr02-rec phosphate in the active site 0.9938 3 121
8fk2-assembly1.cif.gz_B the n-terminal vicr from streptococcus mutans 0.9936 3 121
1nxx-assembly1.cif.gz_A-2 micarec ph 5.5 0.9864 3 121
6rh1-assembly1.cif.gz_C revisiting ph-gated conformational switch. complex hk853-rr468 d53a ph 7 0.9847 2 120
ID Description Score Start End Superfamily
af_P9WGM7_2_84_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9835 1 84 3.40.50.2300
1nxoA00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9816 3 121 3.40.50.2300
4ja2A00 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9813 2 121 3.40.50.2300
af_P21866_1_80_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9813 3 81 3.40.50.2300
af_P69228_9_89_3.40.50.2300 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;Response regulator 0.9802 1 81 3.40.50.2300
ID Description Score Start End GO Terms
AF-A0A1V4VED6-F1-model_v4 Stage 0 sporulation protein A homolog 1 3 123 GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993
AF-A0A1F9XLG0-F1-model_v4 Diguanylate cyclase response regulator 0.999 1 124 GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993
AF-A0A1V4VKQ3-F1-model_v4 Stage 0 sporulation protein A homolog 0.9987 3 124 GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993
AF-A0A1F9X0Y8-F1-model_v4 Diguanylate cyclase 0.9983 2 124 GO:0000160
GO:0003677
AF-A0A4V3C8T0-F1-model_v4 Response regulator receiver domain-containing protein 0.9979 1 123 GO:0000156
GO:0000976
GO:0005829
GO:0006355
GO:0032993

Feature Viewer

pLDDT pTM Quality
86.38 0.62 Medium
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Predicted Structure (AlphaFold2)

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