F235281

General Info

Members Datasets Scaffolds Average Seq Length
160 63 320 206

Family's Representative Sequence

Representative Sequence 3300045976|Ga0466967_0000266|Ga0466967_0000266_4545_5204
Length 219
Sequence MFSRIRGKLVERSEAGVVLDVGGLSYDIFLPPCVAEKVNAHGDGELTLEIYSVLNIDGNTAHYTFYGFSNAIEREFFEALISVASIGPRSAARAFSQPMARIAGAIDRGDHGFLKTLPGIGQQKARDIVAKLQGKVTKFLLIQEAELASGIAHPEQVEGPDFADEALAVLLQLEYKRPEAESMIRTTLESAPHIKDAEALLAEIYRQKATHSPSGHGES

Samples

Sample ID Description Type Environment
1 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
2 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
3 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
4 3300005341 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-1 metaG Metagenome Rhizosphere
5 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
6 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
7 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
8 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
9 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
10 3300005535 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.2-3L metaG Metagenome Rhizosphere
11 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
12 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
13 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
14 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
15 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
16 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
17 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
18 3300020070 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5am-1 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
19 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
20 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
21 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
22 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
23 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
24 3300021441 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 Metagenome Rhizosphere
25 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
26 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300025922 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
34 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
35 3300028023 Rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE5 Metagenome Rhizosphere
36 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
37 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
38 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
39 3300030760 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI4 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
40 3300031090 Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZI1 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
41 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
42 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
43 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
44 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
45 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
46 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
47 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
48 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
49 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
50 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
51 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
52 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
53 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
54 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
55 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
56 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
57 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
58 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
59 3300044694 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R Metagenome Rhizosphere
60 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
61 3300045836 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC4R Metagenome Rhizosphere
62 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
63 3300053077 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-285-CL1_33_12 rhizosphere Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.12
Metatranscriptomes 1.88
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 0
Nodule 0
Rhizoplane 0
Rhizosphere 76.25
Stem 0
Stem Tuber 0
Unclassified 15

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0466967_0000266 3300045976 Bacteria 23012
2 Ga0070683_100050027 3300005329 Bacteria 3867
3 Ga0070680_100728793 3300005336 Bacteria 853
4 Ga0070691_10001138 3300005341 Bacteria 11063
5 Ga0070661_100074176 3300005344 Bacteria 2505
6 Ga0070709_10200128 3300005434 Bacteria 1414
7 Ga0070714_100006805 3300005435 Bacteria 8859
8 Ga0070714_100093670 3300005435 Bacteria 2635
9 Ga0070714_100116690 3300005435 Bacteria 2370
10 Ga0070713_100247525 3300005436 Bacteria 1625
11 Ga0070663_100031032 3300005455 Bacteria 3669
12 Ga0070684_100466170 3300005535 Bacteria 1168
13 Ga0068853_100142257 3300005539 Unclassified 2154
14 Ga0068855_100000448 3300005563 Bacteria 50961
15 Ga0068855_100015398 3300005563 Bacteria 9206
16 Ga0068854_100000018 3300005578 Bacteria 136417
17 Ga0068852_100006422 3300005616 Bacteria 8496
18 Ga0105240_10178200 3300009093 Bacteria 2511
19 Ga0157369_10179664 3300013105 Bacteria 2227
20 Ga0157369_10535634 3300013105 Bacteria 1211
21 Ga0157374_10402112 3300013296 Bacteria 1366
22 Ga0206356_11468501 3300020070 Bacteria 15120
23 Ga0213873_10000774 3300021358 Bacteria 5181
24 Ga0213873_10005404 3300021358 Bacteria 2450
25 Ga0213873_10007872 3300021358 Bacteria 2152
26 Ga0213873_10015573 3300021358 Unclassified 1705
27 Ga0213873_10018421 3300021358 Bacteria 1606
28 Ga0213873_10020984 3300021358 Bacteria 1532
29 Ga0213872_10002714 3300021361 Bacteria 10191
30 Ga0213872_10006324 3300021361 Bacteria 5961
31 Ga0213872_10016868 3300021361 Bacteria 3384
32 Ga0213872_10046098 3300021361 Bacteria 1984
33 Ga0213872_10076822 3300021361 Bacteria 1502
34 Ga0213874_10000622 3300021377 Bacteria 7135
35 Ga0213874_10017068 3300021377 Bacteria 1941
36 Ga0213874_10038930 3300021377 Bacteria 1414
37 Ga0213876_10034364 3300021384 Bacteria 2673
38 Ga0213876_10045648 3300021384 Unclassified 2316
39 Ga0213876_10316187 3300021384 Bacteria 830
40 Ga0213875_10000001 3300021388 Bacteria 2793540
41 Ga0213875_10009858 3300021388 Bacteria 4816
42 Ga0213875_10022829 3300021388 Bacteria 2992
43 Ga0213875_10049699 3300021388 Unclassified 1965
44 Ga0213871_10009325 3300021441 Bacteria 2196
45 Ga0213871_10031053 3300021441 Unclassified 1393
46 Ga0213871_10067983 3300021441 Unclassified 1003
47 Ga0213871_10113056 3300021441 Unclassified 804
48 Ga0207695_10127402 3300025913 Bacteria 2506
49 Ga0207660_10479698 3300025917 Bacteria 1008
50 Ga0207646_10048570 3300025922 Bacteria 3804
51 Ga0207664_10001360 3300025929 Bacteria 16064
52 Ga0207664_10040419 3300025929 Bacteria 3627
53 Ga0207664_10141794 3300025929 Bacteria 2034
54 Ga0207661_10035882 3300025944 Bacteria 3867
55 Ga0207667_10000086 3300025949 Bacteria 150941
56 Ga0207667_10003847 3300025949 Bacteria 18461
57 Ga0207640_10000027 3300025981 Bacteria 137684
58 Ga0207639_10118622 3300026041 Unclassified 2170
59 Ga0207678_10031220 3300026067 Bacteria 4648
60 Ga0207702_10009524 3300026078 Bacteria 8156
61 Ga0265357_1011718 3300028023 Unclassified 896
62 Ga0265334_10008289 3300028573 Bacteria 4423
63 Ga0265323_10031483 3300028653 Bacteria 1971
64 Ga0265338_10000370 3300028800 Bacteria 80574
65 Ga0265338_10184406 3300028800 Bacteria 1588
66 Ga0265762_1008187 3300030760 Bacteria 1860
67 Ga0265760_10001421 3300031090 Bacteria 7052
68 Ga0265332_10030771 3300031238 Bacteria 2343
69 Ga0265325_10005911 3300031241 Bacteria 7499
70 Ga0265325_10105634 3300031241 Bacteria 1374
71 Ga0265339_10032071 3300031249 Unclassified 2965
72 Ga0265316_10000536 3300031344 Bacteria 42732
73 Ga0265316_10025647 3300031344 Bacteria 4916
74 Ga0265316_10037640 3300031344 Bacteria 3904
75 Ga0265316_10390518 3300031344 Unclassified 1003
76 Ga0265313_10030531 3300031595 Unclassified 2773
77 Ga0265342_10003362 3300031712 Bacteria 13211
78 Ga0395899_0007348 3300037312 Bacteria 8520
79 Ga0395900_0056434 3300037418 Bacteria 4042
80 Ga0395898_0015503 3300037466 Bacteria 7815
81 Ga0395898_0649010 3300037466 Bacteria 998
82 Ga0436364_0187394 3300037853 Unclassified 1323
83 Ga0436364_0200784 3300037853 Bacteria 3064
84 Ga0436364_0273345 3300037853 Bacteria 2794207
85 Ga0436364_0280485 3300037853 Bacteria 15040
86 Ga0436364_0323285 3300037853 Bacteria 5067
87 Ga0436364_0341380 3300037853 Bacteria 4235
88 Ga0436364_0517369 3300037853 Bacteria 6369
89 Ga0436364_0756793 3300037853 Bacteria 1309
90 Ga0436364_0948030 3300037853 Bacteria 901
91 Ga0436364_0981244 3300037853 Unclassified 2584
92 Ga0436364_1036500 3300037853 Bacteria 1136
93 Ga0436364_1471395 3300037853 Bacteria 2169
94 Ga0436364_1477883 3300037853 Bacteria 3265
95 Ga0395901_0025034 3300038443 Bacteria 6126
96 Ga0436365_0149135 3300039437 Bacteria 1129
97 Ga0436365_0292538 3300039437 Bacteria 19856
98 Ga0436365_0710099 3300039437 Unclassified 792
99 Ga0436365_0799760 3300039437 Unclassified 886
100 Ga0436365_0848748 3300039437 Bacteria 12101
101 Ga0436365_1310045 3300039437 Unclassified 1420
102 Ga0436365_1816154 3300039437 Bacteria 1359
103 Ga0436360_0152700 3300039438 Bacteria 17756
104 Ga0436360_0218152 3300039438 Bacteria 2298
105 Ga0436360_0301126 3300039438 Bacteria 2538
106 Ga0436360_0422243 3300039438 Bacteria 933
107 Ga0436360_0451195 3300039438 Bacteria 4269
108 Ga0436360_0485331 3300039438 Bacteria 13032
109 Ga0436360_0509086 3300039438 Bacteria 826
110 Ga0436360_0593317 3300039438 Bacteria 1515
111 Ga0436360_0733315 3300039438 Bacteria 3581
112 Ga0436360_0860405 3300039438 Bacteria 8406
113 Ga0436360_0879760 3300039438 Bacteria 1171
114 Ga0436360_0942839 3300039438 Bacteria 1349
115 Ga0436360_1018188 3300039438 Bacteria 2514
116 Ga0436360_1137573 3300039438 Bacteria 1070
117 Ga0436360_1198404 3300039438 Bacteria 3347
118 Ga0436361_0021767 3300039447 Bacteria 12455
119 Ga0436361_0255387 3300039447 Bacteria 19068
120 Ga0436361_0324336 3300039447 Bacteria 1795
121 Ga0436361_0336768 3300039447 Unclassified 931
122 Ga0436361_0477573 3300039447 Bacteria 2308
123 Ga0436361_0600702 3300039447 Bacteria 2875
124 Ga0436361_0805971 3300039447 Bacteria 7663
125 Ga0436361_0812539 3300039447 Unclassified 849
126 Ga0436361_0939636 3300039447 Bacteria 2930
127 Ga0436361_1083470 3300039447 Bacteria 47595
128 Ga0436361_1098294 3300039447 Bacteria 12309
129 Ga0436361_1221054 3300039447 Bacteria 7814
130 Ga0436363_0133090 3300039450 Bacteria 3189
131 Ga0436363_0488281 3300039450 Bacteria 3469
132 Ga0436363_0765913 3300039450 Bacteria 1471
133 Ga0436363_1263679 3300039450 Bacteria 3803
134 Ga0436363_1397059 3300039450 Bacteria 2129
135 Ga0436363_1401807 3300039450 Bacteria 3117
136 Ga0436363_1613114 3300039450 Bacteria 11982
137 Ga0436363_1643572 3300039450 Unclassified 1473
138 Ga0436362_0046201 3300039453 Unclassified 1015
139 Ga0436362_0101876 3300039453 Bacteria 1060
140 Ga0436362_0216373 3300039453 Bacteria 1522
141 Ga0436362_0334764 3300039453 Unclassified 1026
142 Ga0436362_0339029 3300039453 Bacteria 5355
143 Ga0436362_0341755 3300039453 Bacteria 9185
144 Ga0436362_0558111 3300039453 Bacteria 3976
145 Ga0436362_0589946 3300039453 Bacteria 1189
146 Ga0436362_0630237 3300039453 Bacteria 1875
147 Ga0436362_0720836 3300039453 Bacteria 3756
148 Ga0436362_0723052 3300039453 Bacteria 2703
149 Ga0436362_0833636 3300039453 Unclassified 876
150 Ga0436362_0855795 3300039453 Bacteria 2043
151 Ga0436362_1157022 3300039453 Bacteria 6675
152 Ga0436362_1240046 3300039453 Bacteria 773
153 Ga0436362_1249877 3300039453 Bacteria 3580
154 Ga0451577_0233139 3300042876 Unclassified 1665
155 Ga0466966_0081023 3300044684 Bacteria 2021
156 Ga0466963_0027752 3300044694 Bacteria 3628
157 Ga0453684_0395778 3300044712 Bacteria 1548
158 Ga0466958_0009670 3300045836 Bacteria 5381
159 Ga0495604_0041514 3300047317 Bacteria 3608
160 Ga0495601_0197732 3300053077 Bacteria 1314
161 Ga0466967_0000266
162 Ga0070683_100050027
163 Ga0070680_100728793
164 Ga0070691_10001138
165 Ga0070661_100074176
166 Ga0070709_10200128
167 Ga0070714_100006805
168 Ga0070714_100093670
169 Ga0070714_100116690
170 Ga0070713_100247525
171 Ga0070663_100031032
172 Ga0070684_100466170
173 Ga0068853_100142257
174 Ga0068855_100000448
175 Ga0068855_100015398
176 Ga0068854_100000018
177 Ga0068852_100006422
178 Ga0105240_10178200
179 Ga0157369_10179664
180 Ga0157369_10535634
181 Ga0157374_10402112
182 Ga0206356_11468501
183 Ga0213873_10000774
184 Ga0213873_10005404
185 Ga0213873_10007872
186 Ga0213873_10015573
187 Ga0213873_10018421
188 Ga0213873_10020984
189 Ga0213872_10002714
190 Ga0213872_10006324
191 Ga0213872_10016868
192 Ga0213872_10046098
193 Ga0213872_10076822
194 Ga0213874_10000622
195 Ga0213874_10017068
196 Ga0213874_10038930
197 Ga0213876_10034364
198 Ga0213876_10045648
199 Ga0213876_10316187
200 Ga0213875_10000001
201 Ga0213875_10009858
202 Ga0213875_10022829
203 Ga0213875_10049699
204 Ga0213871_10009325
205 Ga0213871_10031053
206 Ga0213871_10067983
207 Ga0213871_10113056
208 Ga0207695_10127402
209 Ga0207660_10479698
210 Ga0207646_10048570
211 Ga0207664_10001360
212 Ga0207664_10040419
213 Ga0207664_10141794
214 Ga0207661_10035882
215 Ga0207667_10000086
216 Ga0207667_10003847
217 Ga0207640_10000027
218 Ga0207639_10118622
219 Ga0207678_10031220
220 Ga0207702_10009524
221 Ga0265357_1011718
222 Ga0265334_10008289
223 Ga0265323_10031483
224 Ga0265338_10000370
225 Ga0265338_10184406
226 Ga0265762_1008187
227 Ga0265760_10001421
228 Ga0265332_10030771
229 Ga0265325_10005911
230 Ga0265325_10105634
231 Ga0265339_10032071
232 Ga0265316_10000536
233 Ga0265316_10025647
234 Ga0265316_10037640
235 Ga0265316_10390518
236 Ga0265313_10030531
237 Ga0265342_10003362
238 Ga0395899_0007348
239 Ga0395900_0056434
240 Ga0395898_0015503
241 Ga0395898_0649010
242 Ga0436364_0187394
243 Ga0436364_0200784
244 Ga0436364_0273345
245 Ga0436364_0280485
246 Ga0436364_0323285
247 Ga0436364_0341380
248 Ga0436364_0517369
249 Ga0436364_0756793
250 Ga0436364_0948030
251 Ga0436364_0981244
252 Ga0436364_1036500
253 Ga0436364_1471395
254 Ga0436364_1477883
255 Ga0395901_0025034
256 Ga0436365_0149135
257 Ga0436365_0292538
258 Ga0436365_0710099
259 Ga0436365_0799760
260 Ga0436365_0848748
261 Ga0436365_1310045
262 Ga0436365_1816154
263 Ga0436360_0152700
264 Ga0436360_0218152
265 Ga0436360_0301126
266 Ga0436360_0422243
267 Ga0436360_0451195
268 Ga0436360_0485331
269 Ga0436360_0509086
270 Ga0436360_0593317
271 Ga0436360_0733315
272 Ga0436360_0860405
273 Ga0436360_0879760
274 Ga0436360_0942839
275 Ga0436360_1018188
276 Ga0436360_1137573
277 Ga0436360_1198404
278 Ga0436361_0021767
279 Ga0436361_0255387
280 Ga0436361_0324336
281 Ga0436361_0336768
282 Ga0436361_0477573
283 Ga0436361_0600702
284 Ga0436361_0805971
285 Ga0436361_0812539
286 Ga0436361_0939636
287 Ga0436361_1083470
288 Ga0436361_1098294
289 Ga0436361_1221054
290 Ga0436363_0133090
291 Ga0436363_0488281
292 Ga0436363_0765913
293 Ga0436363_1263679
294 Ga0436363_1397059
295 Ga0436363_1401807
296 Ga0436363_1613114
297 Ga0436363_1643572
298 Ga0436362_0046201
299 Ga0436362_0101876
300 Ga0436362_0216373
301 Ga0436362_0334764
302 Ga0436362_0339029
303 Ga0436362_0341755
304 Ga0436362_0558111
305 Ga0436362_0589946
306 Ga0436362_0630237
307 Ga0436362_0720836
308 Ga0436362_0723052
309 Ga0436362_0833636
310 Ga0436362_0855795
311 Ga0436362_1157022
312 Ga0436362_1240046
313 Ga0436362_1249877
314 Ga0451577_0233139
315 Ga0466966_0081023
316 Ga0466963_0027752
317 Ga0453684_0395778
318 Ga0466958_0009670
319 Ga0495604_0041514
320 Ga0495601_0197732

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01330

RuvA_N

RuvA N terminal domain

1

67

0.83

Structural Annotation

Top 5 Hits

ID Description Score Start End
7x7q-assembly1.cif.gz_G cryoem structure of ruva-ruvb-holliday junction complex 0.9033 1 138
7pbu-assembly1.cif.gz_F ruvab branch migration motor complexed to the holliday junction - ruva-hj core [t2 dataset] 0.891 1 135
7x7q-assembly1.cif.gz_G cryoem structure of ruva-ruvb-holliday junction complex 0.8909 1 138
1ixr-assembly1.cif.gz_A ruva-ruvb complex 0.8789 1 136
1d8l-assembly1.cif.gz_A e. coli holliday junction binding protein ruva nh2 region lacking domain iii 0.8761 1 143
ID Description Score Start End Superfamily
2h5xB02 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9259 71 135 1.10.150.20
2h5xD02 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9243 71 135 1.10.150.20
2h5xC02 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9228 71 136 1.10.150.20
2zteA02 Mainly Alpha;Orthogonal Bundle;DNA polymerase; domain 1;5' to 3' exonuclease, C-terminal subdomain 0.9171 70 135 1.10.150.20
1d8lB02 Mainly Beta;Beta Barrel;OB fold (Dihydrolipoamide Acetyltransferase, E2P);Nucleic acid-binding proteins 0.9045 1 70 2.40.50.140
ID Description Score Start End GO Terms
AF-A0A1W9T6H9-F1-model_v4 Holliday junction DNA helicase RuvA 0.9128 1 134 GO:0003677
GO:0005524
GO:0005737
GO:0006281
GO:0006310
GO:0009378
AF-A0A661TB17-F1-model_v4 Holliday junction DNA helicase RuvA 0.9095 1 135 GO:0003677
GO:0005524
GO:0005737
GO:0006281
GO:0006310
GO:0009378
AF-A0A3N5S8Y1-F1-model_v4 Holliday junction DNA helicase RuvA 0.9068 1 83 GO:0003677
GO:0005524
GO:0006281
GO:0006310
GO:0009378
AF-A0A1W9T6H9-F1-model_v4 Holliday junction DNA helicase RuvA 0.9062 1 134 GO:0003677
GO:0005524
GO:0005737
GO:0006281
GO:0006310
GO:0009378
AF-A0A1A9VJV2-F1-model_v4 DNA helicase Holliday junction RuvA type domain-containing protein 0.9033 1 136 GO:0003677
GO:0005524
GO:0005737
GO:0006281
GO:0006310
GO:0009378

Map