F233311

General Info

Members Datasets Scaffolds Average Seq Length
159 128 318 237

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2508501114|2509076344
Length 242
Sequence DSSALVVFSGGQDSATCLAWALSRYERVETIGFSYGQRHAVEMECREPIRQALARLSPLWAGRLGPDRVIPLNVLGEVSVSALTADLPVAGSRLDGLPATFVPGRNLVFLTFAAIVAFQRGLKRVVTGVCETDFSGYPDCRDDTVKALQTALNLGMNARLVLETPLMWIDKAETWTLAETLGGNALVDIIVQETHTCYKGDRSTRHDWGFGCGECDACRLRAAGWQRYSRLRSEEVEDLPSR

Samples

Sample ID Description Type Environment
1 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
2 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
3 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
4 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
5 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
6 3300005435 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG Metagenome Rhizosphere
7 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
8 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
9 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
10 3300005985 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 Metagenome Rhizosphere
11 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
12 3300006051 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 Metagenome Endosphere
13 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
14 3300006177 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 Metagenome Endosphere
15 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
16 3300006186 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 Metagenome Endosphere
17 3300006353 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 Metagenome Endosphere
18 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
19 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
20 3300006941 Root nodule microbial communities of legume samples collected from California, USA - Siratro red BW Metagenome Nodule
21 3300006942 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW Metagenome Nodule
22 3300006943 Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW Metagenome Nodule
23 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
24 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
25 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
26 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
27 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
28 3300009148 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG Metagenome Rhizosphere
29 3300010159 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_3 Metagenome Rhizosphere
30 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
31 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
32 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
33 3300021320 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 Metagenome Nodule
34 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
35 3300021358 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 Metagenome Rhizosphere
36 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
37 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
38 3300021388 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 Metagenome Unclassified
39 3300025253 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
40 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
41 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
49 3300027357 Root nodule microbial communities of legume samples collected from California USA - Cow pea white BW (SPAdes) (version 2) Metagenome Nodule
50 3300027361 Root nodule microbial communities of legume samples collected from California, USA - Siratro white BW (SPAdes) (version 2) Metagenome Nodule
51 3300027363 Root nodule microbial communities of legume samples collected from California, USA - Siratro red BW (SPAdes) (version 2) Metagenome Nodule
52 3300027671 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
54 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
56 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
57 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
58 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
59 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
60 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
61 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
62 3300034957 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_2 Metagenome Rhizosphere
63 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
64 3300035119 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_4 Metagenome Rhizosphere
65 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
66 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
67 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
68 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
69 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
70 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
71 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
72 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
73 3300041494 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_3 MetaG Metagenome Unclassified
74 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
75 3300042015 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z070717_5287 Metagenome Rhizosphere
76 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
77 3300046539 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 rhizosphere Metagenome Rhizosphere
78 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
79 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
80 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
81 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
82 3300048919 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_7x unlabeled Metagenome Unclassified
83 3300048920 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1e N15 Metagenome Unclassified
84 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
85 3300049521 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_B_7_drought Metagenome Rhizosphere
86 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
87 3300049580 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
89 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
90 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
91 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
92 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
93 3300050489 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-2 re-annotation Metagenome Endosphere
94 3300050490 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-3 re-annotation Metagenome Endosphere
95 3300050491 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation Metagenome Endosphere
96 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
97 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
98 3300050496 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-5 re-annotation Metagenome Endosphere
99 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
100 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
101 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
102 3300050514 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation Metagenome Rhizosphere
103 3300050516 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-4 re-annotation Metagenome Endosphere
104 3300053096 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 endosphere Metagenome Endosphere
105 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
106 3300053134 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co1_7_5 endosphere Metagenome Endosphere
107 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
108 3300053148 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-360-CL2_44_14 endosphere Metagenome Endosphere
109 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
110 2508501114 Microvirga lotononidis WSM3557 Isolate Nodule
111 2508501050 Microvirga lupini Lut6 Isolate Nodule
112 2509276019 Ensifer aridi TW10 Isolate Nodule
113 2558860100 Sinorhizobium sp. PC2 Isolate Nodule
114 2728368998 Bradyrhizobium macuxiense BR 10303 Isolate Nodule
115 2773857925 Microvirga vignae BR3299 Isolate Unclassified
116 2791355094 Sinorhizobium sp. BJ1 Isolate Nodule
117 2835312727 Microvirga calopogonii CCBAU 65841 Isolate Nodule
118 2850079185 Ensifer aridi JNVU TP6 Isolate Unclassified
119 2882456835 Microvirga sp. KLBC 81 Isolate Unclassified
120 2894232714 Microvirga tunisiensis Lmie10 Isolate Nodule
121 2906610324
122 2932422444 Comamonas sp. 4034 Isolate Rhizosphere
123 2932794094 Bradyrhizobium sp. S3.2.6 Isolate Nodule
124 2935638405 Bradyrhizobium sp. JR19.8 Isolate Nodule
125 2935827899 Bradyrhizobium sp. RT4a Isolate Nodule
126 2954011201 Phyllobacterium ifrigiyense W4I11 Isolate Rhizosphere
127 2970524798 Mesorhizobium sp. M5C.F.Ca.ET.164.01.1.1 Isolate Nodule
128 2970540015 Mesorhizobium sp. M5C.F.Ca.IN.020.29.1.1 Isolate Nodule

Type Distribution

Type Percentage (%)
Metagenomes 85.44
Metatranscriptomes 0
Isolates 14.56

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 16.35
Nodule 16.35
Rhizoplane 1.89
Rhizosphere 53.46
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0068869_100279719 3300005334 Bacteria 1342
2 Ga0070680_100231949 3300005336 Bacteria 1559
3 Ga0070680_100821624 3300005336 Bacteria 801
4 Ga0070687_100151203 3300005343 Bacteria 1363
5 Ga0070661_100000003 3300005344 Bacteria 254653
6 Ga0070673_100284927 3300005364 Bacteria 1450
7 Ga0070714_100211749 3300005435 Bacteria 1777
8 Ga0070681_10418956 3300005458 Bacteria 1251
9 Ga0070681_10552033 3300005458 Bacteria 1066
10 Ga0070681_10904809 3300005458 Bacteria 801
11 Ga0070697_100282619 3300005536 Bacteria 1424
12 Ga0070696_100144592 3300005546 Bacteria 1741
13 Ga0081539_10002153 3300005985 Bacteria 29063
14 Ga0075365_10049968 3300006038 Bacteria 2757
15 Ga0075365_10077103 3300006038 Bacteria 2251
16 Ga0075365_10325061 3300006038 Bacteria 1083
17 Ga0075364_10286994 3300006051 Bacteria 1120
18 Ga0070716_100004460 3300006173 Bacteria 6692
19 Ga0075362_10013924 3300006177 Bacteria 3233
20 Ga0075362_10039798 3300006177 Bacteria 2068
21 Ga0075367_10006312 3300006178 Bacteria 5978
22 Ga0075367_10115372 3300006178 Bacteria 1651
23 Ga0075369_10000524 3300006186 Bacteria 12061
24 Ga0075370_10009610 3300006353 Bacteria 5030
25 Ga0075434_100581461 3300006871 Bacteria 1139
26 Ga0075436_100110941 3300006914 Bacteria 1914
27 Ga0075436_100182528 3300006914 Bacteria 1483
28 Ga0099825_1042903 3300006941 Bacteria 1232
29 Ga0099824_1011011 3300006942 Bacteria 10412
30 Ga0099822_1032253 3300006943 Bacteria 3747
31 Ga0075435_100132867 3300007076 Bacteria 2083
32 Ga0099794_10058902 3300007265 Bacteria 1862
33 Ga0111539_11322641 3300009094 Bacteria 836
34 Ga0105245_10450943 3300009098 Bacteria 1295
35 Ga0114129_10293765 3300009147 Bacteria 2168
36 Ga0105243_10956547 3300009148 Bacteria 856
37 Ga0099796_10006077 3300010159 Bacteria 3069
38 Ga0157373_10105502 3300013100 Bacteria 1982
39 Ga0157369_10160379 3300013105 Bacteria 2374
40 Ga0157378_10000569 3300013297 Bacteria 34903
41 Ga0214544_1019750 3300021320 Bacteria 5033
42 Ga0214543_1000132 3300021327 Bacteria 102506
43 Ga0214543_1028508 3300021327 Bacteria 2637
44 Ga0213873_10000016 3300021358 Bacteria 124829
45 Ga0213872_10044249 3300021361 Bacteria 2027
46 Ga0213872_10058239 3300021361 Bacteria 1749
47 Ga0213876_10000056 3300021384 Bacteria 135017
48 Ga0213876_10013556 3300021384 Bacteria 4325
49 Ga0213875_10151569 3300021388 Bacteria 1086
50 Ga0209677_111563 3300025253 Bacteria 1368
51 Ga0207707_10035584 3300025912 Bacteria 4354
52 Ga0207707_10037836 3300025912 Bacteria 4215
53 Ga0207707_10719761 3300025912 Bacteria 837
54 Ga0207660_10221588 3300025917 Bacteria 1485
55 Ga0207662_10174402 3300025918 Bacteria 1381
56 Ga0207649_10000016 3300025920 Bacteria 243843
57 Ga0207664_10015341 3300025929 Bacteria 5555
58 Ga0207709_10226735 3300025935 Bacteria 1351
59 Ga0207665_10001713 3300025939 Bacteria 14745
60 Ga0207667_10103041 3300025949 Bacteria 2944
61 Ga0207658_10002742 3300025986 Bacteria 12717
62 Ga0209589_1006838 3300027357 Bacteria 18659
63 Ga0209489_106519 3300027361 Bacteria 18659
64 Ga0209700_106271 3300027363 Bacteria 18659
65 Ga0209588_1018822 3300027671 Bacteria 2151
66 Ga0207428_10051239 3300027907 Bacteria 3300
67 Ga0268265_10747992 3300028380 Bacteria 949
68 Ga0265338_10001953 3300028800 Bacteria 32164
69 Ga0265325_10042368 3300031241 Bacteria 2381
70 Ga0265331_10015583 3300031250 Bacteria 4009
71 Ga0265316_10187352 3300031344 Bacteria 1539
72 Ga0307410_10422301 3300031852 Bacteria 1082
73 Ga0307412_10154661 3300031911 Bacteria 1696
74 Ga0307412_10196935 3300031911 Bacteria 1527
75 Ga0307510_10162402 3300033180 Bacteria 1828
76 Ga0373938_0013133 3300034957 Bacteria 1566
77 Ga0373939_0066212 3300035114 Bacteria 1164
78 Ga0373956_0037555 3300035119 Bacteria 2141
79 Ga0395899_0010949 3300037312 Bacteria 6949
80 Ga0395898_0363985 3300037466 Bacteria 1379
81 Ga0395905_0000814 3300037471 Bacteria 40969
82 Ga0436364_0487115 3300037853 Bacteria 5864
83 Ga0436364_1257796 3300037853 Bacteria 5411
84 Ga0395901_0735117 3300038443 Bacteria 981
85 Ga0436365_0869628 3300039437 Bacteria 66366
86 Ga0436365_1513620 3300039437 Bacteria 2020
87 Ga0436365_1554148 3300039437 Bacteria 25253
88 Ga0436361_1036469 3300039447 Bacteria 6697
89 Ga0436361_1174850 3300039447 Bacteria 3850
90 Ga0436362_0580304 3300039453 Bacteria 124869
91 Ga0451837_1767545 3300041494 Bacteria 3471
92 Ga0439449_0001577 3300042007 Bacteria 8943
93 Ga0439462_0003976 3300042015 Bacteria 3582
94 Ga0451577_0016851 3300042876 Bacteria 6758
95 Ga0495621_0072018 3300046539 Bacteria 1275
96 Ga0495686_0001957 3300047472 Bacteria 20470
97 Ga0496102_0189391 3300048905 Bacteria 1938
98 Ga0496114_0361594 3300048917 Bacteria 1284
99 Ga0496115_0420425 3300048918 Bacteria 1083
100 Ga0496116_0235048 3300048919 Bacteria 926
101 Ga0496117_0010052 3300048920 Bacteria 8693
102 Ga0496118_0000977 3300048921 Bacteria 44572
103 Ga0496118_0030354 3300048921 Bacteria 4513
104 Ga0501298_039052 3300049521 Bacteria 958
105 Ga0501034_0042050 3300049571 Bacteria 4625
106 Ga0501034_0392681 3300049571 Bacteria 1311
107 Ga0501046_0023357 3300049580 Bacteria 5088
108 Ga0501047_0080275 3300049581 Bacteria 3135
109 Ga0501047_0139120 3300049581 Bacteria 2307
110 Ga0501067_0053402 3300049583 Bacteria 2239
111 Ga0501070_0357015 3300049586 Bacteria 1186
112 Ga0501080_0321915 3300049742 Bacteria 1400
113 Ga0501080_0822890 3300049742 Bacteria 813
114 Ga0501044_0149973 3300049823 Bacteria 2314
115 nmdc:mga03683_18827_c1 3300050489 Bacteria 2630
116 nmdc:mga03683_75270_c1 3300050489 Bacteria 1449
117 nmdc:mga03n38_109846_c1 3300050490 Bacteria 1341
118 nmdc:mga00v17_419927_c1 3300050491 Bacteria 869
119 nmdc:mga0yw44_244441_c1 3300050492 Bacteria 1193
120 nmdc:mga06z11_123753_c1 3300050494 Bacteria 1445
121 nmdc:mga06z11_2048_c1 3300050494 Bacteria 7648
122 nmdc:mga06z11_250589_c1 3300050494 Bacteria 1042
123 nmdc:mga07m45_12198_c1 3300050496 Bacteria 4535
124 nmdc:mga0qj67_200735_c1 3300050509 Bacteria 1620
125 nmdc:mga08y16_200592_c1 3300050511 Bacteria 2067
126 nmdc:mga08y16_59806_c1 3300050511 Bacteria 3980
127 nmdc:mga0rr50_156222_c1 3300050513 Bacteria 1848
128 nmdc:mga08x19_78661_c1 3300050514 Bacteria 2162
129 nmdc:mga0sz30_2173_c2 3300050516 Bacteria 6580
130 Ga0500641_0000535 3300053096 Bacteria 13681
131 Ga0500618_002101 3300053125 Bacteria 7898
132 Ga0500658_0203118 3300053134 Bacteria 906
133 Ga0500568_0025215 3300053139 Bacteria 2511
134 Ga0500590_107410 3300053148 Bacteria 1330
135 Ga0501084_0606351 3300054114 Bacteria 925
136 2509076344 2508501114 Bacteria 7082538
137 2508729670 2508501050 Bacteria 9633614
138 2509073807 2508501114 Bacteria 7082538
139 2509379765 2509276019 Bacteria 6802256
140 2558862787 2558860100 Bacteria 8458965
141 2728749834 2728368998 Bacteria 8720350
142 2774871312 2773857925 Bacteria 6472445
143 2792641063 2791355094 Bacteria 7011481
144 2792642350 2791355094 Bacteria 7011481
145 2835315505 2835312727 Bacteria 7413381
146 2835316148 2835312727 Bacteria 7413381
147 2850083727 2850079185 Bacteria 6848280
148 2882459499 2882456835 Bacteria 6863978
149 2882463014 2882456835 Bacteria 6863978
150 2894235068 2894232714 Bacteria 8834183
151 2906618878
152 2932422867 2932422444 Bacteria 4678430
153 2932795682 2932794094 Bacteria 7915132
154 2935647882 2935638405 Bacteria 10015038
155 2935837366 2935827899 Bacteria 10038562
156 2954012466 2954011201 Bacteria 4762601
157 2970525348 2970524798 Bacteria 6840927
158 2970540519 2970540015 Bacteria 6977556
159 2970541227 2970540015 Bacteria 6977556
160 Ga0068869_100279719
161 Ga0070680_100231949
162 Ga0070680_100821624
163 Ga0070687_100151203
164 Ga0070661_100000003
165 Ga0070673_100284927
166 Ga0070714_100211749
167 Ga0070681_10418956
168 Ga0070681_10552033
169 Ga0070681_10904809
170 Ga0070697_100282619
171 Ga0070696_100144592
172 Ga0081539_10002153
173 Ga0075365_10049968
174 Ga0075365_10077103
175 Ga0075365_10325061
176 Ga0075364_10286994
177 Ga0070716_100004460
178 Ga0075362_10013924
179 Ga0075362_10039798
180 Ga0075367_10006312
181 Ga0075367_10115372
182 Ga0075369_10000524
183 Ga0075370_10009610
184 Ga0075434_100581461
185 Ga0075436_100110941
186 Ga0075436_100182528
187 Ga0099825_1042903
188 Ga0099824_1011011
189 Ga0099822_1032253
190 Ga0075435_100132867
191 Ga0099794_10058902
192 Ga0111539_11322641
193 Ga0105245_10450943
194 Ga0114129_10293765
195 Ga0105243_10956547
196 Ga0099796_10006077
197 Ga0157373_10105502
198 Ga0157369_10160379
199 Ga0157378_10000569
200 Ga0214544_1019750
201 Ga0214543_1000132
202 Ga0214543_1028508
203 Ga0213873_10000016
204 Ga0213872_10044249
205 Ga0213872_10058239
206 Ga0213876_10000056
207 Ga0213876_10013556
208 Ga0213875_10151569
209 Ga0209677_111563
210 Ga0207707_10035584
211 Ga0207707_10037836
212 Ga0207707_10719761
213 Ga0207660_10221588
214 Ga0207662_10174402
215 Ga0207649_10000016
216 Ga0207664_10015341
217 Ga0207709_10226735
218 Ga0207665_10001713
219 Ga0207667_10103041
220 Ga0207658_10002742
221 Ga0209589_1006838
222 Ga0209489_106519
223 Ga0209700_106271
224 Ga0209588_1018822
225 Ga0207428_10051239
226 Ga0268265_10747992
227 Ga0265338_10001953
228 Ga0265325_10042368
229 Ga0265331_10015583
230 Ga0265316_10187352
231 Ga0307410_10422301
232 Ga0307412_10154661
233 Ga0307412_10196935
234 Ga0307510_10162402
235 Ga0373938_0013133
236 Ga0373939_0066212
237 Ga0373956_0037555
238 Ga0395899_0010949
239 Ga0395898_0363985
240 Ga0395905_0000814
241 Ga0436364_0487115
242 Ga0436364_1257796
243 Ga0395901_0735117
244 Ga0436365_0869628
245 Ga0436365_1513620
246 Ga0436365_1554148
247 Ga0436361_1036469
248 Ga0436361_1174850
249 Ga0436362_0580304
250 Ga0451837_1767545
251 Ga0439449_0001577
252 Ga0439462_0003976
253 Ga0451577_0016851
254 Ga0495621_0072018
255 Ga0495686_0001957
256 Ga0496102_0189391
257 Ga0496114_0361594
258 Ga0496115_0420425
259 Ga0496116_0235048
260 Ga0496117_0010052
261 Ga0496118_0000977
262 Ga0496118_0030354
263 Ga0501298_039052
264 Ga0501034_0042050
265 Ga0501034_0392681
266 Ga0501046_0023357
267 Ga0501047_0080275
268 Ga0501047_0139120
269 Ga0501067_0053402
270 Ga0501070_0357015
271 Ga0501080_0321915
272 Ga0501080_0822890
273 Ga0501044_0149973
274 nmdc:mga03683_18827_c1
275 nmdc:mga03683_75270_c1
276 nmdc:mga03n38_109846_c1
277 nmdc:mga00v17_419927_c1
278 nmdc:mga0yw44_244441_c1
279 nmdc:mga06z11_123753_c1
280 nmdc:mga06z11_2048_c1
281 nmdc:mga06z11_250589_c1
282 nmdc:mga07m45_12198_c1
283 nmdc:mga0qj67_200735_c1
284 nmdc:mga08y16_200592_c1
285 nmdc:mga08y16_59806_c1
286 nmdc:mga0rr50_156222_c1
287 nmdc:mga08x19_78661_c1
288 nmdc:mga0sz30_2173_c2
289 Ga0500641_0000535
290 Ga0500618_002101
291 Ga0500658_0203118
292 Ga0500568_0025215
293 Ga0500590_107410
294 Ga0501084_0606351
295 2509076344
296 2508729670
297 2509073807
298 2509379765
299 2558862787
300 2728749834
301 2774871312
302 2792641063
303 2792642350
304 2835315505
305 2835316148
306 2850083727
307 2882459499
308 2882463014
309 2894235068
310 2906618878
311 2932422867
312 2932795682
313 2935647882
314 2935837366
315 2954012466
316 2970525348
317 2970540519
318 2970541227

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF06508

QueC

Queuosine biosynthesis protein QueC

3

229

0.96

Structural Annotation

Top 5 Hits

ID Description Score Start End
3bl5-assembly1.cif.gz_A crystal structure of quec from bacillus subtilis: an enzyme involved in preq1 biosynthesis 0.899 4 228
3bl5-assembly6.cif.gz_F crystal structure of quec from bacillus subtilis: an enzyme involved in preq1 biosynthesis 0.8858 4 228
3bl5-assembly1.cif.gz_A crystal structure of quec from bacillus subtilis: an enzyme involved in preq1 biosynthesis 0.8814 4 228
3bl5-assembly6.cif.gz_F crystal structure of quec from bacillus subtilis: an enzyme involved in preq1 biosynthesis 0.869 4 228
2pg3-assembly1.cif.gz_A-2 crystal structure of a queuosine biosynthesis protein quec (eca1155) from erwinia carotovora subsp. atroseptica scri1043 at 2.40 a resolution 0.8493 1 229
ID Description Score Start End Superfamily
af_Q2G1X6_7_221_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9403 3 231 3.40.50.620
af_Q2G1X6_7_221_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.9318 3 231 3.40.50.620
af_Q58742_1_231_3.40.50.620 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.8022 4 226 3.40.50.620
1vbkB03 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.7344 4 179 3.40.50.620
1vbkB03 Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;HUPs 0.6955 4 179 3.40.50.620
ID Description Score Start End GO Terms
AF-A0A090MKU4-F1-model_v4 7-cyano-7-deazaguanine synthase (EC 6.3.4.20) 1.001 160 227 GO:0008616
AF-A0A254MXM6-F1-model_v4 7-cyano-7-deazaguanine synthase 1.001 166 228 GO:0008616
AF-A0A3D1IUU2-F1-model_v4 7-cyano-7-deazaguanine synthase 0.9954 162 227 GO:0008616
AF-A0A4Q3QIE9-F1-model_v4 deleted 0.9932 159 229
AF-B2JJV1-F1-model_v4 7-cyano-7-deazaguanine synthase (EC 6.3.4.20) (7-cyano-7-carbaguanine synthase) (PreQ(0) synthase) (Queuosine biosynthesis protein QueC) 0.9895 2 228 GO:0005524
GO:0008270
GO:0008616
GO:0016879

Map