F232596

General Info

Members Datasets Scaffolds Average Seq Length
159 110 157 201

Family's Representative Sequence

Representative Sequence 3300035115|Ga0373941_0090050|Ga0373941_0090050_222_821
Length 199
Sequence MPARFQAETFTPAVLDAQRRYYGRSAQREPTDAPDRLGPGEIEFLAERDSFSMATVSPDGWPYVQHRGGPRGFLQVLDAQTLAFADFKGNRQLISTGNLAAGNRVALLLIDHVHRERLKLLGHARVLDAREHPEMADRLAPTPALRKKVERLVLIDVVAFDWNCPAWITPRYTATEIEEMVGPLRRRVQELESAGRRGP

Samples

Sample ID Description Type Environment
1 2786546548 Spartobacteria bacterium LR76 Isolate Unclassified
2 2786546940 Opitutaceae bacterium EW11 Isolate Unclassified
3 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
4 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
5 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
6 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
7 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
8 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
9 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
10 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
11 3300005365 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG Metagenome Rhizosphere
12 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
13 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
14 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
15 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
16 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
17 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
18 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
19 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
20 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
21 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
22 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
23 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
24 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
25 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
26 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
27 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
28 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
29 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
30 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
31 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
32 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
33 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
34 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
35 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
36 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
37 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
38 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
39 3300013105 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG Metagenome Rhizosphere
40 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
41 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
42 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
43 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
44 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
45 3300021361 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 Metagenome Rhizosphere
46 3300021377 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 Metagenome Unclassified
47 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
48 3300022467 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - Diel MetaT C5pm-2 (Metagenome Metatranscriptome) (v2) (version 2) Metatranscriptome Rhizosphere
49 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025912 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300025913 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
53 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
60 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
62 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
64 3300027907 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) Metagenome Rhizosphere
65 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300028556 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG Metagenome Rhizosphere
67 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
68 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
69 3300031240 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-27 metaG Metagenome Rhizosphere
70 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
71 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
72 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
73 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
74 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
75 3300035085 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_2 Metagenome Rhizosphere
76 3300035090 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_2 Metagenome Rhizosphere
77 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
78 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
79 3300035115 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_11 Metagenome Rhizosphere
80 3300035170 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_1 Metagenome Rhizosphere
81 3300035171 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_4 Metagenome Rhizosphere
82 3300035242 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_11 Metagenome Rhizosphere
83 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
84 3300035692 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_11 Metagenome Rhizosphere
85 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
86 3300035725 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_N_8 Metagenome Rhizosphere
87 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
88 3300037068 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_16 Metagenome Rhizosphere
89 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
90 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
91 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
92 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
93 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
94 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
95 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
96 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
97 3300046517 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere Metagenome Rhizosphere
98 3300046535 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL1_28_16 rhizosphere Metagenome Rhizosphere
99 3300046543 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 rhizosphere Metagenome Rhizosphere
100 3300046678 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-258-CL1_34_5 rhizosphere Metagenome Rhizosphere
101 3300048912 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled Metagenome Rhizoplane
102 3300048928 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 Metagenome Unclassified
103 3300049514 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - A25_B_5_drought Metagenome Rhizosphere
104 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
105 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
106 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
107 3300053078 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-351-CL1_27_10 rhizosphere Metagenome Rhizosphere
108 3300053104 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co2_41_23 endosphere Metagenome Endosphere
109 3300053119 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 endosphere Metagenome Endosphere
110 3300061719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC2R1 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.11
Metatranscriptomes 0.63
Isolates 1.26

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.26
Nodule 0
Rhizoplane 0.63
Rhizosphere 88.05
Stem 0
Stem Tuber 0
Unclassified 10.06

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH2_10063802 3300003320 Unclassified 2440
2 rootH2_10104874 3300003320 Bacteria 4379
3 rootL2_10108526 3300003322 Bacteria 1243
4 rootL2_10139453 3300003322 Bacteria 1489
5 rootH1_10206320 3300003323 Unclassified 1311
6 Ga0065712_10121260 3300005290 Bacteria 1667
7 Ga0070658_10554996 3300005327 Bacteria 994
8 Ga0070689_100033958 3300005340 Bacteria 3891
9 Ga0070689_100369528 3300005340 Bacteria 1207
10 Ga0070689_100491786 3300005340 Bacteria 1050
11 Ga0070689_100592283 3300005340 Bacteria 960
12 Ga0070687_100241481 3300005343 Bacteria 1117
13 Ga0070692_10167766 3300005345 Bacteria 1263
14 Ga0070688_100011383 3300005365 Bacteria 4942
15 Ga0070710_10475912 3300005437 Unclassified 851
16 Ga0070706_100079839 3300005467 Bacteria 3029
17 Ga0070706_100176168 3300005467 Bacteria 1997
18 Ga0070698_100040280 3300005471 Bacteria 4802
19 Ga0070699_100116123 3300005518 Bacteria 2352
20 Ga0070699_100257544 3300005518 Bacteria 1560
21 Ga0070697_100082017 3300005536 Bacteria 2658
22 Ga0068855_100348602 3300005563 Bacteria 1631
23 Ga0068856_100000067 3300005614 Bacteria 98357
24 Ga0068859_100333759 3300005617 Bacteria 1610
25 Ga0068864_100368256 3300005618 Bacteria 1359
26 Ga0068864_100475644 3300005618 Bacteria 1198
27 Ga0068861_100835181 3300005719 Bacteria 867
28 Ga0068863_100000249 3300005841 Bacteria 57044
29 Ga0068863_100161119 3300005841 Bacteria 2149
30 Ga0068858_100001460 3300005842 Bacteria 24308
31 Ga0068858_100085889 3300005842 Bacteria 2928
32 Ga0068858_100086216 3300005842 Bacteria 2921
33 Ga0068858_100162599 3300005842 Bacteria 2102
34 Ga0068858_100767223 3300005842 Bacteria 940
35 Ga0068862_100685610 3300005844 Unclassified 991
36 Ga0070717_10502114 3300006028 Bacteria 1096
37 Ga0070712_100477116 3300006175 Archaea 1042
38 Ga0097621_100159521 3300006237 Bacteria 1938
39 Ga0075428_100131583 3300006844 Bacteria 2721
40 Ga0075428_100210828 3300006844 Bacteria 2099
41 Ga0075430_100119703 3300006846 Bacteria 2195
42 Ga0075431_100126362 3300006847 Bacteria 2638
43 Ga0075431_100263752 3300006847 Bacteria 1748
44 Ga0097620_100333727 3300006931 Bacteria 1610
45 Ga0099794_10480759 3300007265 Unclassified 653
46 Ga0105240_10005484 3300009093 Bacteria 18912
47 Ga0105240_10033804 3300009093 Bacteria 6602
48 Ga0105240_10090822 3300009093 Bacteria 3732
49 Ga0111539_10088977 3300009094 Bacteria 3628
50 Ga0105247_10079864 3300009101 Bacteria 2059
51 Ga0105248_10135964 3300009177 Unclassified 2773
52 Ga0105237_10005794 3300009545 Bacteria 13865
53 Ga0105237_11291368 3300009545 Bacteria 736
54 Ga0105239_10243931 3300010375 Bacteria 2017
55 Ga0157369_10098257 3300013105 Bacteria 3122
56 Ga0157374_10274066 3300013296 Bacteria 1664
57 Ga0157374_10688370 3300013296 Unclassified 1035
58 Ga0163162_10224694 3300013306 Bacteria 2007
59 Ga0163162_10581231 3300013306 Bacteria 1247
60 Ga0157372_10294153 3300013307 Bacteria 1888
61 Ga0157375_10000131 3300013308 Bacteria 74862
62 Ga0157375_10870827 3300013308 Unclassified 1046
63 Ga0163163_10000293 3300014325 Bacteria 49814
64 Ga0163163_10021705 3300014325 Bacteria 6064
65 Ga0163163_10178831 3300014325 Bacteria 2168
66 Ga0213872_10009748 3300021361 Bacteria 4592
67 Ga0213874_10164189 3300021377 Bacteria 782
68 Ga0213876_10000330 3300021384 Bacteria 41354
69 Ga0213876_10006333 3300021384 Bacteria 6453
70 Ga0224712_10048259 3300022467 Bacteria 1643
71 Ga0207705_10293588 3300025909 Bacteria 1246
72 Ga0207684_10291334 3300025910 Bacteria 1407
73 Ga0207707_10136712 3300025912 Bacteria 2143
74 Ga0207695_10013917 3300025913 Bacteria 9564
75 Ga0207695_10158157 3300025913 Bacteria 2199
76 Ga0207671_10004803 3300025914 Bacteria 12728
77 Ga0207662_10371711 3300025918 Unclassified 964
78 Ga0207694_10206106 3300025924 Bacteria 1601
79 Ga0207670_10130325 3300025936 Bacteria 1841
80 Ga0207670_10439967 3300025936 Bacteria 1049
81 Ga0207665_10085819 3300025939 Unclassified 2173
82 Ga0207665_11074869 3300025939 Bacteria 641
83 Ga0207711_10116186 3300025941 Unclassified 2385
84 Ga0207703_10030206 3300026035 Bacteria 4281
85 Ga0207703_10035488 3300026035 Bacteria 3963
86 Ga0207703_10139644 3300026035 Bacteria 2101
87 Ga0207702_10001497 3300026078 Bacteria 23094
88 Ga0207641_10002706 3300026088 Bacteria 16177
89 Ga0207641_10381216 3300026088 Bacteria 1350
90 Ga0207641_10565000 3300026088 Bacteria 1111
91 Ga0207676_10153333 3300026095 Bacteria 1987
92 Ga0207676_10276359 3300026095 Bacteria 1523
93 Ga0207675_100751852 3300026118 Bacteria 986
94 Ga0207428_10371156 3300027907 Bacteria 1051
95 Ga0268266_10000012 3300028379 Bacteria 734912
96 Ga0265337_1003702 3300028556 Bacteria 6538
97 Ga0265338_10001068 3300028800 Bacteria 45548
98 Ga0265338_10002720 3300028800 Bacteria 25943
99 Ga0265324_10000268 3300029957 Bacteria 38429
100 Ga0265324_10090245 3300029957 Unclassified 1042
101 Ga0265324_10104711 3300029957 Bacteria 961
102 Ga0265320_10000009 3300031240 Bacteria 255096
103 Ga0265320_10004928 3300031240 Bacteria 8662
104 Ga0265339_10040831 3300031249 Bacteria 2578
105 Ga0265327_10012987 3300031251 Bacteria 5569
106 Ga0307408_100001740 3300031548 Bacteria 15905
107 Ga0307406_10001999 3300031901 Bacteria 11126
108 Ga0307409_100000162 3300031995 Bacteria 25840
109 Ga0373929_0044176 3300035085 Unclassified 1000
110 Ga0373949_0003837 3300035090 Bacteria 3494
111 Ga0373932_0000006 3300035112 Bacteria 208547
112 Ga0373939_0216797 3300035114 Bacteria 731
113 Ga0373941_0090050 3300035115 Bacteria 1051
114 Ga0373943_0124307 3300035170 Bacteria 1374
115 Ga0373946_0260305 3300035171 Bacteria 849
116 Ga0373962_0000031 3300035242 Bacteria 36127
117 Ga0373931_0000009 3300035691 Bacteria 349854
118 Ga0373931_0082822 3300035691 Bacteria 1774
119 Ga0373931_0661610 3300035691 Bacteria 687
120 Ga0373935_0023190 3300035692 Bacteria 3812
121 Ga0373927_0083955 3300035695 Bacteria 2065
122 Ga0373947_0028657 3300035725 Bacteria 3266
123 Ga0373937_0276307 3300036401 Bacteria 1586
124 Ga0373925_0000235 3300037068 Bacteria 58451
125 Ga0436364_0948974 3300037853 Bacteria 1321
126 Ga0436365_0496418 3300039437 Bacteria 36061
127 Ga0436365_0529871 3300039437 Bacteria 993
128 Ga0436365_0880122 3300039437 Bacteria 11505
129 Ga0436360_0947190 3300039438 Bacteria 4544
130 Ga0436360_1366180 3300039438 Unclassified 2351
131 Ga0436361_0208608 3300039447 Bacteria 1701
132 Ga0436361_0276499 3300039447 Unclassified 1597
133 Ga0436361_0528846 3300039447 Bacteria 9429
134 Ga0436361_0678958 3300039447 Bacteria 1587
135 Ga0436361_0750815 3300039447 Unclassified 2125
136 Ga0436361_0904708 3300039447 Bacteria 10815
137 Ga0436363_0627682 3300039450 Bacteria 16337
138 Ga0451577_0486123 3300042876 Bacteria 1121
139 Ga0451576_0129259 3300045051 Bacteria 2633
140 Ga0451576_0501665 3300045051 Bacteria 1275
141 Ga0451576_0889135 3300045051 Unclassified 935
142 Ga0466967_0007926 3300045976 Bacteria 7725
143 Ga0495630_0093830 3300046517 Bacteria 2269
144 Ga0495586_0016146 3300046535 Bacteria 3972
145 Ga0495586_0336441 3300046535 Bacteria 866
146 Ga0495645_0024770 3300046543 Bacteria 4354
147 Ga0495599_0210781 3300046678 Bacteria 1191
148 Ga0496109_0427142 3300048912 Bacteria 1252
149 Ga0496125_0000006 3300048928 Bacteria 759385
150 Ga0501291_056443 3300049514 Bacteria 728
151 nmdc:mga0qj67_83719_c1 3300050509 Bacteria 2557
152 nmdc:mga06r32_224440_c1 3300050510 Bacteria 1867
153 nmdc:mga08y16_464279_c1 3300050511 Bacteria 1290
154 Ga0495612_0360984 3300053078 Unclassified 657
155 Ga0500556_0002692 3300053104 Bacteria 5512
156 Ga0500595_079828 3300053119 Bacteria 959
157 Ga0466962_0045616 3300061719 Bacteria 2095

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300045976 Ga0466967_0007926 Ga0466967_0007926_6684_7235 180
2 3300061719 Ga0466962_0045616 Ga0466962_0045616_1057_1608 180
3 3300021377 Ga0213874_10164189 Ga0213874_101641891 181
4 3300005518 Ga0070699_100116123 Ga0070699_1001161232 182
5 3300005536 Ga0070697_100082017 Ga0070697_1000820172 182
6 3300025939 Ga0207665_10085819 Ga0207665_100858191 182
7 3300039447 Ga0436361_0750815 Ga0436361_0750815_1249_1860 190
8 3300050509 nmdc:mga0qj67_83719_c1 nmdc:mga0qj67_83719_c1_1181_1759 190
9 3300014325 Ga0163163_10000293 Ga0163163_1000029325 194
10 iso_pu_bacteria 2786546548 2787506343 194
11 iso_pu_bacteria 2786546940 2788433328 194
12 3300028800 Ga0265338_10002720 Ga0265338_1000272020 196
13 3300029957 Ga0265324_10090245 Ga0265324_100902452 196
14 3300031249 Ga0265339_10040831 Ga0265339_100408315 196
15 3300039438 Ga0436360_0947190 Ga0436360_0947190_474_1064 196
16 3300003323 rootH1_10206320 rootH1_102063201 197
17 3300006028 Ga0070717_10502114 Ga0070717_105021142 197
18 3300013308 Ga0157375_10000131 Ga0157375_1000013125 197
19 3300031251 Ga0265327_10012987 Ga0265327_100129872 197
20 3300053104 Ga0500556_0002692 Ga0500556_0002692_4631_5224 197
21 3300003320 rootH2_10063802 rootH2_100638022 198
22 3300003320 rootH2_10104874 rootH2_101048742 198
23 3300003322 rootL2_10108526 rootL2_101085262 198
24 3300003322 rootL2_10139453 rootL2_101394533 198
25 3300005290 Ga0065712_10121260 Ga0065712_101212602 198
26 3300005327 Ga0070658_10554996 Ga0070658_105549961 198
27 3300005340 Ga0070689_100033958 Ga0070689_1000339584 198
28 3300005340 Ga0070689_100369528 Ga0070689_1003695282 198
29 3300005340 Ga0070689_100491786 Ga0070689_1004917861 198
30 3300005340 Ga0070689_100592283 Ga0070689_1005922831 198
31 3300005343 Ga0070687_100241481 Ga0070687_1002414812 198
32 3300005345 Ga0070692_10167766 Ga0070692_101677661 198
33 3300005365 Ga0070688_100011383 Ga0070688_1000113834 198
34 3300005437 Ga0070710_10475912 Ga0070710_104759121 198
35 3300005467 Ga0070706_100079839 Ga0070706_1000798392 198
36 3300005467 Ga0070706_100176168 Ga0070706_1001761682 198
37 3300005471 Ga0070698_100040280 Ga0070698_1000402804 198
38 3300005518 Ga0070699_100257544 Ga0070699_1002575441 198
39 3300005563 Ga0068855_100348602 Ga0068855_1003486024 198
40 3300005614 Ga0068856_100000067 Ga0068856_10000006763 198
41 3300005617 Ga0068859_100333759 Ga0068859_1003337593 198
42 3300005618 Ga0068864_100368256 Ga0068864_1003682562 198
43 3300005618 Ga0068864_100475644 Ga0068864_1004756442 198
44 3300005719 Ga0068861_100835181 Ga0068861_1008351812 198
45 3300005841 Ga0068863_100000249 Ga0068863_1000002496 198
46 3300005841 Ga0068863_100161119 Ga0068863_1001611192 198
47 3300005842 Ga0068858_100001460 Ga0068858_1000014605 198
48 3300005842 Ga0068858_100085889 Ga0068858_1000858894 198
49 3300005842 Ga0068858_100086216 Ga0068858_1000862162 198
50 3300005842 Ga0068858_100162599 Ga0068858_1001625992 198
51 3300005842 Ga0068858_100767223 Ga0068858_1007672231 198
52 3300005844 Ga0068862_100685610 Ga0068862_1006856102 198
53 3300006175 Ga0070712_100477116 Ga0070712_1004771162 198
54 3300006237 Ga0097621_100159521 Ga0097621_1001595214 198
55 3300006844 Ga0075428_100131583 Ga0075428_1001315834 198
56 3300006844 Ga0075428_100210828 Ga0075428_1002108283 198
57 3300006846 Ga0075430_100119703 Ga0075430_1001197032 198
58 3300006847 Ga0075431_100126362 Ga0075431_1001263624 198
59 3300006847 Ga0075431_100263752 Ga0075431_1002637522 198
60 3300006931 Ga0097620_100333727 Ga0097620_1003337273 198
61 3300007265 Ga0099794_10480759 Ga0099794_104807591 198
62 3300009093 Ga0105240_10005484 Ga0105240_100054844 198
63 3300009093 Ga0105240_10033804 Ga0105240_100338042 198
64 3300009093 Ga0105240_10090822 Ga0105240_100908223 198
65 3300009094 Ga0111539_10088977 Ga0111539_100889772 198
66 3300009101 Ga0105247_10079864 Ga0105247_100798642 198
67 3300009177 Ga0105248_10135964 Ga0105248_101359642 198
68 3300009545 Ga0105237_10005794 Ga0105237_1000579412 198
69 3300009545 Ga0105237_11291368 Ga0105237_112913682 198
70 3300010375 Ga0105239_10243931 Ga0105239_102439311 198
71 3300013105 Ga0157369_10098257 Ga0157369_100982574 198
72 3300013296 Ga0157374_10274066 Ga0157374_102740662 198
73 3300013296 Ga0157374_10688370 Ga0157374_106883701 198
74 3300013306 Ga0163162_10224694 Ga0163162_102246942 198
75 3300013306 Ga0163162_10581231 Ga0163162_105812312 198
76 3300013307 Ga0157372_10294153 Ga0157372_102941532 198
77 3300013308 Ga0157375_10870827 Ga0157375_108708271 198
78 3300014325 Ga0163163_10021705 Ga0163163_100217054 198
79 3300014325 Ga0163163_10178831 Ga0163163_101788312 198
80 3300021361 Ga0213872_10009748 Ga0213872_100097484 198
81 3300021384 Ga0213876_10000330 Ga0213876_100003306 198
82 3300021384 Ga0213876_10006333 Ga0213876_100063334 198
83 3300022467 Ga0224712_10048259 Ga0224712_100482592 198
84 3300025909 Ga0207705_10293588 Ga0207705_102935881 198
85 3300025910 Ga0207684_10291334 Ga0207684_102913342 198
86 3300025912 Ga0207707_10136712 Ga0207707_101367123 198
87 3300025913 Ga0207695_10013917 Ga0207695_100139172 198
88 3300025913 Ga0207695_10158157 Ga0207695_101581573 198
89 3300025914 Ga0207671_10004803 Ga0207671_1000480312 198
90 3300025918 Ga0207662_10371711 Ga0207662_103717112 198
91 3300025924 Ga0207694_10206106 Ga0207694_102061062 198
92 3300025936 Ga0207670_10130325 Ga0207670_101303252 198
93 3300025936 Ga0207670_10439967 Ga0207670_104399671 198
94 3300025939 Ga0207665_11074869 Ga0207665_110748691 198
95 3300025941 Ga0207711_10116186 Ga0207711_101161862 198
96 3300026035 Ga0207703_10030206 Ga0207703_100302065 198
97 3300026035 Ga0207703_10035488 Ga0207703_100354887 198
98 3300026035 Ga0207703_10139644 Ga0207703_101396442 198
99 3300026078 Ga0207702_10001497 Ga0207702_1000149713 198
100 3300026088 Ga0207641_10002706 Ga0207641_100027066 198
101 3300026088 Ga0207641_10381216 Ga0207641_103812162 198
102 3300026088 Ga0207641_10565000 Ga0207641_105650002 198
103 3300026095 Ga0207676_10153333 Ga0207676_101533333 198
104 3300026095 Ga0207676_10276359 Ga0207676_102763592 198
105 3300026118 Ga0207675_100751852 Ga0207675_1007518522 198
106 3300027907 Ga0207428_10371156 Ga0207428_103711562 198
107 3300028379 Ga0268266_10000012 Ga0268266_10000012477 198
108 3300028556 Ga0265337_1003702 Ga0265337_10037029 198
109 3300028800 Ga0265338_10001068 Ga0265338_1000106819 198
110 3300029957 Ga0265324_10000268 Ga0265324_1000026829 198
111 3300029957 Ga0265324_10104711 Ga0265324_101047112 198
112 3300031240 Ga0265320_10000009 Ga0265320_10000009125 198
113 3300031240 Ga0265320_10004928 Ga0265320_100049289 198
114 3300031548 Ga0307408_100001740 Ga0307408_1000017409 198
115 3300031901 Ga0307406_10001999 Ga0307406_1000199913 198
116 3300031995 Ga0307409_100000162 Ga0307409_10000016213 198
117 3300035085 Ga0373929_0044176 Ga0373929_0044176_301_897 198
118 3300035090 Ga0373949_0003837 Ga0373949_0003837_223_864 198
119 3300035112 Ga0373932_0000006 Ga0373932_0000006_144101_144742 198
120 3300035114 Ga0373939_0216797 Ga0373939_0216797_73_669 198
121 3300035115 Ga0373941_0090050 Ga0373941_0090050_222_821 198
122 3300035170 Ga0373943_0124307 Ga0373943_0124307_383_979 198
123 3300035171 Ga0373946_0260305 Ga0373946_0260305_16_612 198
124 3300035242 Ga0373962_0000031 Ga0373962_0000031_35495_36091 198
125 3300035691 Ga0373931_0000009 Ga0373931_0000009_142416_143057 198
126 3300035691 Ga0373931_0082822 Ga0373931_0082822_1124_1720 198
127 3300035691 Ga0373931_0661610 Ga0373931_0661610_55_654 198
128 3300035692 Ga0373935_0023190 Ga0373935_0023190_1696_2292 198
129 3300035695 Ga0373927_0083955 Ga0373927_0083955_648_1244 198
130 3300035725 Ga0373947_0028657 Ga0373947_0028657_1154_1795 198
131 3300036401 Ga0373937_0276307 Ga0373937_0276307_441_1037 198
132 3300037068 Ga0373925_0000235 Ga0373925_0000235_41184_41825 198
133 3300037853 Ga0436364_0948974 Ga0436364_0948974_144_797 198
134 3300039437 Ga0436365_0496418 Ga0436365_0496418_23594_24217 198
135 3300039437 Ga0436365_0529871 Ga0436365_0529871_216_917 198
136 3300039437 Ga0436365_0880122 Ga0436365_0880122_8896_9516 198
137 3300039438 Ga0436360_1366180 Ga0436360_1366180_124_726 198
138 3300039447 Ga0436361_0208608 Ga0436361_0208608_1006_1608 198
139 3300039447 Ga0436361_0276499 Ga0436361_0276499_434_1045 198
140 3300039447 Ga0436361_0528846 Ga0436361_0528846_2076_2678 198
141 3300039447 Ga0436361_0678958 Ga0436361_0678958_481_1092 198
142 3300039447 Ga0436361_0904708 Ga0436361_0904708_7997_8608 198
143 3300039450 Ga0436363_0627682 Ga0436363_0627682_11763_12362 198
144 3300042876 Ga0451577_0486123 Ga0451577_0486123_187_783 198
145 3300045051 Ga0451576_0129259 Ga0451576_0129259_1826_2422 198
146 3300045051 Ga0451576_0501665 Ga0451576_0501665_117_713 198
147 3300045051 Ga0451576_0889135 Ga0451576_0889135_167_763 198
148 3300046517 Ga0495630_0093830 Ga0495630_0093830_1467_2069 198
149 3300046535 Ga0495586_0016146 Ga0495586_0016146_107_706 198
150 3300046535 Ga0495586_0336441 Ga0495586_0336441_222_824 198
151 3300046543 Ga0495645_0024770 Ga0495645_0024770_705_1343 198
152 3300046678 Ga0495599_0210781 Ga0495599_0210781_124_720 198
153 3300048912 Ga0496109_0427142 Ga0496109_0427142_471_1079 198
154 3300048928 Ga0496125_0000006 Ga0496125_0000006_209233_209838 198
155 3300049514 Ga0501291_056443 Ga0501291_056443_42_662 198
156 3300050510 nmdc:mga06r32_224440_c1 nmdc:mga06r32_224440_c1_786_1397 198
157 3300050511 nmdc:mga08y16_464279_c1 nmdc:mga08y16_464279_c1_408_1004 198
158 3300053078 Ga0495612_0360984 Ga0495612_0360984_34_630 198
159 3300053119 Ga0500595_079828 Ga0500595_079828_85_681 198

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01243

Putative_PNPOx

Pyridoxamine 5'-phosphate oxidase

41

131

0.97

Structural Annotation

Top 5 Hits

ID Description Score Start End
2htd-assembly1.cif.gz_A crystal structure of a putative pyridoxamine 5'-phosphate oxidase (ldb0262) from lactobacillus delbrueckii subsp. at 1.60 a resolution 0.831 36 160
7eg5-assembly1.cif.gz_B fmn-bound form of yvic from lactococcus lactis subsp. lactis il1403 0.8175 37 163
3amf-assembly1.cif.gz_B e13r mutant of fmn-binding protein from desulfovibrio vulgaris (miyazaki f) 0.8093 37 163
3awh-assembly1.cif.gz_B e13k mutant of fmn-binding protein from desulfovibrio vulgaris (miyazaki f) 0.8081 37 163
7eg5-assembly1.cif.gz_B fmn-bound form of yvic from lactococcus lactis subsp. lactis il1403 0.8057 37 163
ID Description Score Start End Superfamily
2htdA00 Mainly Beta;Roll;Pnp Oxidase; Chain A;Electron Transport, Fmn-binding Protein; Chain A 0.8233 36 160 2.30.110.10
5escD00 Mainly Beta;Roll;Pnp Oxidase; Chain A;Electron Transport, Fmn-binding Protein; Chain A 0.7878 37 163 2.30.110.10
1wliA00 Mainly Beta;Roll;Pnp Oxidase; Chain A;Electron Transport, Fmn-binding Protein; Chain A 0.7832 43 163 2.30.110.10
5escD00 Mainly Beta;Roll;Pnp Oxidase; Chain A;Electron Transport, Fmn-binding Protein; Chain A 0.776 37 163 2.30.110.10
2htdA00 Mainly Beta;Roll;Pnp Oxidase; Chain A;Electron Transport, Fmn-binding Protein; Chain A 0.7684 36 160 2.30.110.10
ID Description Score Start End GO Terms
AF-A0A0K1J655-F1-model_v4 deleted 0.9539 37 162
AF-H0UEG4-F1-model_v4 deleted 0.9416 36 164
AF-A0A0K1J655-F1-model_v4 deleted 0.9394 37 162
AF-A0A1P8FH70-F1-model_v4 Pyridoxamine 5'-phosphate oxidase N-terminal domain-containing protein 0.9288 31 175
AF-A0A4R2A309-F1-model_v4 Pyridoxamine 5'-phosphate oxidase N-terminal domain-containing protein 0.9271 36 165

Feature Viewer

pLDDT pTM Quality
90.7 0.81 High
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Predicted Structure (AlphaFold2)

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