F231907
General Info
| Members | Datasets | Scaffolds | Average Seq Length |
|---|---|---|---|
| 159 | 123 | 159 | 342 |
Family's Representative Sequence
| Representative Sequence | 3300006844|Ga0075428_100071551|Ga0075428_1000715512 |
| Length | 393 |
| Sequence | MTHVAGVNTYVHTEAAVPVRYFQMKPPEGEYSMHKALITGITGQDGSYLAEFLMSKGYEVHGLIRRASTFNTGRVNHLYVDPHDPGAKLFLHYGDLANAEQMTPLIYDMQPQEIYHLGAQSHVRVSFDMPEYTGDVTGLGTTRLLQAIHSSGIQTKFYQASSSEMFGAAPAPQSEHTAFQPQSPYAAAKVYAYWMVVNYRQGHNLFACNGMLFNHESPRRGETFVTRKVTQAVARILAGQQQKLYLGNLEAKRDWGYAPEYVEAMWHMLQQDVPDDYVIGTGETHSVREFVQAAFAYAGLDWREYVEIDPRYFRPTEVACLQADTTKARMQLGWEPKVTFEELIAIMVDADMEALGLQPIGDGQCTLATKCAGWHQWSTAVTALQQGAAHKFE |
Samples
| Sample ID | Description | Type | Environment | |
|---|---|---|---|---|
| 1 | 3300005290 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) | Metagenome | Rhizosphere |
| 2 | 3300005328 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG | Metagenome | Rhizosphere |
| 3 | 3300005355 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG | Metagenome | Rhizosphere |
| 4 | 3300005365 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3H metaG | Metagenome | Rhizosphere |
| 5 | 3300005366 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG | Metagenome | Rhizosphere |
| 6 | 3300005367 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG | Metagenome | Rhizosphere |
| 7 | 3300005438 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG | Metagenome | Rhizosphere |
| 8 | 3300005441 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG | Metagenome | Rhizosphere |
| 9 | 3300005459 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 | Metagenome | Rhizosphere |
| 10 | 3300005467 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG | Metagenome | Rhizosphere |
| 11 | 3300005468 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG | Metagenome | Rhizosphere |
| 12 | 3300005544 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG | Metagenome | Rhizosphere |
| 13 | 3300005546 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG | Metagenome | Rhizosphere |
| 14 | 3300005548 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG | Metagenome | Rhizosphere |
| 15 | 3300005564 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG | Metagenome | Rhizosphere |
| 16 | 3300005577 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 | Metagenome | Rhizosphere |
| 17 | 3300005614 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 | Metagenome | Rhizosphere |
| 18 | 3300005616 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 | Metagenome | Rhizosphere |
| 19 | 3300005617 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 | Metagenome | Rhizosphere |
| 20 | 3300005618 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 | Metagenome | Rhizosphere |
| 21 | 3300005840 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 | Metagenome | Rhizosphere |
| 22 | 3300005841 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 | Metagenome | Rhizosphere |
| 23 | 3300005842 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 | Metagenome | Rhizosphere |
| 24 | 3300005843 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 | Metagenome | Rhizosphere |
| 25 | 3300005981 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S5T2R1 | Metagenome | Rhizosphere |
| 26 | 3300005985 | Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S4T2R2 | Metagenome | Rhizosphere |
| 27 | 3300006028 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG | Metagenome | Rhizosphere |
| 28 | 3300006844 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 | Metagenome | Rhizosphere |
| 29 | 3300006881 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 | Metagenome | Rhizosphere |
| 30 | 3300006914 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 | Metagenome | Rhizosphere |
| 31 | 3300006931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) | Metagenome | Rhizosphere |
| 32 | 3300009093 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG | Metagenome | Rhizosphere |
| 33 | 3300009094 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 34 | 3300009098 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG | Metagenome | Rhizosphere |
| 35 | 3300009101 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG | Metagenome | Rhizosphere |
| 36 | 3300009147 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) | Metagenome | Rhizosphere |
| 37 | 3300009148 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG | Metagenome | Rhizosphere |
| 38 | 3300009176 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG | Metagenome | Rhizosphere |
| 39 | 3300009551 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG | Metagenome | Rhizosphere |
| 40 | 3300009553 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG | Metagenome | Rhizosphere |
| 41 | 3300013105 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2-5 metaG | Metagenome | Rhizosphere |
| 42 | 3300013296 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG | Metagenome | Rhizosphere |
| 43 | 3300013297 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG | Metagenome | Rhizosphere |
| 44 | 3300013306 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG | Metagenome | Rhizosphere |
| 45 | 3300013307 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG | Metagenome | Rhizosphere |
| 46 | 3300013308 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG | Metagenome | Rhizosphere |
| 47 | 3300014325 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG | Metagenome | Rhizosphere |
| 48 | 3300014326 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG | Metagenome | Rhizosphere |
| 49 | 3300014968 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG | Metagenome | Rhizosphere |
| 50 | 3300014969 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG | Metagenome | Rhizosphere |
| 51 | 3300017792 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG | Metagenome | Rhizosphere |
| 52 | 3300021358 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 | Metagenome | Rhizosphere |
| 53 | 3300021384 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 | Metagenome | Unclassified |
| 54 | 3300021388 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 | Metagenome | Unclassified |
| 55 | 3300025907 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 56 | 3300025910 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 57 | 3300025911 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 58 | 3300025919 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 59 | 3300025922 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 60 | 3300025924 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 61 | 3300025931 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 62 | 3300025933 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 63 | 3300025936 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 64 | 3300025938 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 65 | 3300025960 | Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 66 | 3300025961 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 67 | 3300025986 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 68 | 3300026035 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 69 | 3300026067 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 70 | 3300026075 | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 71 | 3300026078 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 72 | 3300026088 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 73 | 3300026095 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 74 | 3300026116 | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 75 | 3300027907 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (SPAdes) (version 3) | Metagenome | Rhizosphere |
| 76 | 3300028379 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 77 | 3300028381 | Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) | Metagenome | Rhizosphere |
| 78 | 3300028556 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-22 metaG | Metagenome | Rhizosphere |
| 79 | 3300030878 | Metatranscriptome of rhizosphere microbial communities from Maridalen valley, Oslo, Norway - NZE1 (Metagenome Metatranscriptome) | Metatranscriptome | Rhizosphere |
| 80 | 3300031235 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG | Metagenome | Rhizosphere |
| 81 | 3300031241 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG | Metagenome | Rhizosphere |
| 82 | 3300031249 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG | Metagenome | Rhizosphere |
| 83 | 3300031344 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG | Metagenome | Rhizosphere |
| 84 | 3300031595 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG | Metagenome | Rhizosphere |
| 85 | 3300031712 | Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG | Metagenome | Rhizosphere |
| 86 | 3300031727 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 | Metagenome | Rhizosphere |
| 87 | 3300031733 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 | Metagenome | Rhizosphere |
| 88 | 3300031901 | Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 | Metagenome | Rhizosphere |
| 89 | 3300036401 | Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 | Metagenome | Rhizosphere |
| 90 | 3300036647 | Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA | Metagenome | Rhizosphere |
| 91 | 3300037471 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 | Metagenome | Rhizosphere |
| 92 | 3300037853 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 | Metagenome | Unclassified |
| 93 | 3300038443 | Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 | Metagenome | Rhizosphere |
| 94 | 3300039437 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 | Metagenome | Unclassified |
| 95 | 3300039450 | Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 | Metagenome | Unclassified |
| 96 | 3300039453 | Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 | Metagenome | Rhizosphere |
| 97 | 3300044673 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED | Metagenome | Rhizosphere |
| 98 | 3300044694 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC3R | Metagenome | Rhizosphere |
| 99 | 3300044712 | Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED | Metagenome | Rhizosphere |
| 100 | 3300045051 | Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED | Metagenome | Rhizosphere |
| 101 | 3300045976 | Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R | Metagenome | Rhizosphere |
| 102 | 3300046517 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-470-CL2_38_23 rhizosphere | Metagenome | Rhizosphere |
| 103 | 3300046533 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL2_37_16 rhizosphere | Metagenome | Rhizosphere |
| 104 | 3300046642 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere | Metagenome | Rhizosphere |
| 105 | 3300047321 | Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL3_98_5 rhizosphere | Metagenome | Rhizosphere |
| 106 | 3300048912 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8w unlabeled | Metagenome | Rhizoplane |
| 107 | 3300048914 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4d N15 | Metagenome | Rhizoplane |
| 108 | 3300048915 | Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_5c N15 | Metagenome | Rhizoplane |
| 109 | 3300048928 | Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_5e N15 | Metagenome | Unclassified |
| 110 | 3300049572 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 111 | 3300049573 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 | Metagenome | Rhizosphere |
| 112 | 3300049575 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 113 | 3300049577 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 114 | 3300049578 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 | Metagenome | Rhizosphere |
| 115 | 3300049592 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 | Metagenome | Rhizosphere |
| 116 | 3300049742 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 | Metagenome | Rhizosphere |
| 117 | 3300049822 | Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 | Metagenome | Rhizosphere |
| 118 | 3300050491 | Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-4 re-annotation | Metagenome | Endosphere |
| 119 | 3300050508 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation | Metagenome | Rhizosphere |
| 120 | 3300050511 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation | Metagenome | Rhizosphere |
| 121 | 3300050514 | Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 re-annotation | Metagenome | Rhizosphere |
| 122 | 3300053087 | Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co3_14_51 endosphere | Metagenome | Endosphere |
| 123 | 3300061734 | Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) | Metagenome | Rhizosphere |
Type Distribution
| Type | Percentage (%) |
|---|---|
| Metagenomes | 99.37 |
| Metatranscriptomes | 0.63 |
| Isolates | 0 |
Biome Distribution
| Category | Percentage (%) |
|---|---|
| Aerial Root | 0 |
| Bulb | 0 |
| Endosphere | 1.26 |
| Nodule | 0 |
| Rhizoplane | 1.89 |
| Rhizosphere | 90.57 |
| Stem | 0 |
| Stem Tuber | 0 |
| Unclassified | 6.29 |
Taxonomy
Scaffolds
| Scaffold | Dataset | Taxonomy | Length | |
|---|---|---|---|---|
| 1 | Ga0065712_10097554 | 3300005290 | Bacteria | 2137 |
| 2 | Ga0070676_10111259 | 3300005328 | Bacteria | 1705 |
| 3 | Ga0070671_100020893 | 3300005355 | Bacteria | 5340 |
| 4 | Ga0070688_100003652 | 3300005365 | Bacteria | 7942 |
| 5 | Ga0070659_100058395 | 3300005366 | Bacteria | 3044 |
| 6 | Ga0070667_100153218 | 3300005367 | Bacteria | 2026 |
| 7 | Ga0070701_10078403 | 3300005438 | Bacteria | 1782 |
| 8 | Ga0070700_100163027 | 3300005441 | Bacteria | 1536 |
| 9 | Ga0068867_100123844 | 3300005459 | Bacteria | 2001 |
| 10 | Ga0070706_100186414 | 3300005467 | Bacteria | 1939 |
| 11 | Ga0070707_100045442 | 3300005468 | Bacteria | 4204 |
| 12 | Ga0070707_100066038 | 3300005468 | Bacteria | 3476 |
| 13 | Ga0070686_100031291 | 3300005544 | Bacteria | 3252 |
| 14 | Ga0070696_100015788 | 3300005546 | Bacteria | 5076 |
| 15 | Ga0070665_100000027 | 3300005548 | Bacteria | 359314 |
| 16 | Ga0070665_100006752 | 3300005548 | Bacteria | 11664 |
| 17 | Ga0070665_100191051 | 3300005548 | Bacteria | 2048 |
| 18 | Ga0070664_100027063 | 3300005564 | Bacteria | 4764 |
| 19 | Ga0068857_100246083 | 3300005577 | Bacteria | 1638 |
| 20 | Ga0068856_100005385 | 3300005614 | Bacteria | 12615 |
| 21 | Ga0068856_100046093 | 3300005614 | Bacteria | 4294 |
| 22 | Ga0068852_100037036 | 3300005616 | Bacteria | 4088 |
| 23 | Ga0068859_100029947 | 3300005617 | Bacteria | 5461 |
| 24 | Ga0068859_100033406 | 3300005617 | Bacteria | 5165 |
| 25 | Ga0068864_100002446 | 3300005618 | Bacteria | 15342 |
| 26 | Ga0068870_10038328 | 3300005840 | Bacteria | 2474 |
| 27 | Ga0068863_100000233 | 3300005841 | Bacteria | 58900 |
| 28 | Ga0068858_100084348 | 3300005842 | Bacteria | 2955 |
| 29 | Ga0068860_100017841 | 3300005843 | Bacteria | 6912 |
| 30 | Ga0081538_10019058 | 3300005981 | Bacteria | 5120 |
| 31 | Ga0081539_10011465 | 3300005985 | Bacteria | 6999 |
| 32 | Ga0081539_10032534 | 3300005985 | Bacteria | 3192 |
| 33 | Ga0070717_10148144 | 3300006028 | Bacteria | 2029 |
| 34 | Ga0070717_10175572 | 3300006028 | Bacteria | 1865 |
| 35 | Ga0075428_100048581 | 3300006844 | Bacteria | 4657 |
| 36 | Ga0075428_100071551 | 3300006844 | Bacteria | 3790 |
| 37 | Ga0075428_100236447 | 3300006844 | Bacteria | 1971 |
| 38 | Ga0075428_100240658 | 3300006844 | Unclassified | 1952 |
| 39 | Ga0068865_100152407 | 3300006881 | Bacteria | 1755 |
| 40 | Ga0075436_100147195 | 3300006914 | Bacteria | 1656 |
| 41 | Ga0097620_100029947 | 3300006931 | Bacteria | 5461 |
| 42 | Ga0097620_100033404 | 3300006931 | Bacteria | 5165 |
| 43 | Ga0105240_10012334 | 3300009093 | Bacteria | 11805 |
| 44 | Ga0111539_10019617 | 3300009094 | Bacteria | 8341 |
| 45 | Ga0111539_10190124 | 3300009094 | Bacteria | 2396 |
| 46 | Ga0105245_10057339 | 3300009098 | Bacteria | 3503 |
| 47 | Ga0105247_10008889 | 3300009101 | Bacteria | 6120 |
| 48 | Ga0114129_10487474 | 3300009147 | Bacteria | 1612 |
| 49 | Ga0105243_10068852 | 3300009148 | Bacteria | 2853 |
| 50 | Ga0105243_10080623 | 3300009148 | Bacteria | 2655 |
| 51 | Ga0105242_10071005 | 3300009176 | Bacteria | 2888 |
| 52 | Ga0105238_10063333 | 3300009551 | Bacteria | 3698 |
| 53 | Ga0105249_10133479 | 3300009553 | Bacteria | 2373 |
| 54 | Ga0157369_10304249 | 3300013105 | Bacteria | 1658 |
| 55 | Ga0157374_10081592 | 3300013296 | Bacteria | 3069 |
| 56 | Ga0157378_10017130 | 3300013297 | Bacteria | 6351 |
| 57 | Ga0163162_10030082 | 3300013306 | Bacteria | 5379 |
| 58 | Ga0157372_10180208 | 3300013307 | Bacteria | 2445 |
| 59 | Ga0157375_10047728 | 3300013308 | Bacteria | 4184 |
| 60 | Ga0163163_10003902 | 3300014325 | Bacteria | 12717 |
| 61 | Ga0157380_10143418 | 3300014326 | Bacteria | 2055 |
| 62 | Ga0157379_10125033 | 3300014968 | Bacteria | 2314 |
| 63 | Ga0157376_10537601 | 3300014969 | Bacteria | 1154 |
| 64 | Ga0163161_10063816 | 3300017792 | Bacteria | 2686 |
| 65 | Ga0163161_10219575 | 3300017792 | Bacteria | 1471 |
| 66 | Ga0213873_10012613 | 3300021358 | Bacteria | 1836 |
| 67 | Ga0213876_10064007 | 3300021384 | Bacteria | 1941 |
| 68 | Ga0213875_10077573 | 3300021388 | Bacteria | 1550 |
| 69 | Ga0207645_10101297 | 3300025907 | Bacteria | 1858 |
| 70 | Ga0207684_10140050 | 3300025910 | Bacteria | 2079 |
| 71 | Ga0207654_10145092 | 3300025911 | Bacteria | 1518 |
| 72 | Ga0207657_10068966 | 3300025919 | Bacteria | 3002 |
| 73 | Ga0207646_10124432 | 3300025922 | Bacteria | 2318 |
| 74 | Ga0207646_10125261 | 3300025922 | Bacteria | 2310 |
| 75 | Ga0207646_10188933 | 3300025922 | Bacteria | 1860 |
| 76 | Ga0207694_10179466 | 3300025924 | Bacteria | 1717 |
| 77 | Ga0207644_10064543 | 3300025931 | Bacteria | 2660 |
| 78 | Ga0207706_10126610 | 3300025933 | Bacteria | 2246 |
| 79 | Ga0207670_10166768 | 3300025936 | Bacteria | 1648 |
| 80 | Ga0207704_10007712 | 3300025938 | Bacteria | 5103 |
| 81 | Ga0207651_10051406 | 3300025960 | Bacteria | 2804 |
| 82 | Ga0207712_10023692 | 3300025961 | Bacteria | 4055 |
| 83 | Ga0207658_10192335 | 3300025986 | Bacteria | 1697 |
| 84 | Ga0207703_10029483 | 3300026035 | Bacteria | 4330 |
| 85 | Ga0207703_10072851 | 3300026035 | Bacteria | 2840 |
| 86 | Ga0207678_10053510 | 3300026067 | Bacteria | 3478 |
| 87 | Ga0207708_10054914 | 3300026075 | Bacteria | 3037 |
| 88 | Ga0207708_10107630 | 3300026075 | Bacteria | 2162 |
| 89 | Ga0207702_10009796 | 3300026078 | Bacteria | 8037 |
| 90 | Ga0207641_10000233 | 3300026088 | Bacteria | 71788 |
| 91 | Ga0207641_10302679 | 3300026088 | Bacteria | 1511 |
| 92 | Ga0207676_10133661 | 3300026095 | Bacteria | 2113 |
| 93 | Ga0207674_10024891 | 3300026116 | Bacteria | 6388 |
| 94 | Ga0207428_10024266 | 3300027907 | Bacteria | 5094 |
| 95 | Ga0207428_10065475 | 3300027907 | Bacteria | 2867 |
| 96 | Ga0268266_10000050 | 3300028379 | Bacteria | 302778 |
| 97 | Ga0268266_10038791 | 3300028379 | Bacteria | 4055 |
| 98 | Ga0268264_10008281 | 3300028381 | Bacteria | 8638 |
| 99 | Ga0265337_1004825 | 3300028556 | Bacteria | 5514 |
| 100 | Ga0265770_1009080 | 3300030878 | Bacteria | 1428 |
| 101 | Ga0265330_10000566 | 3300031235 | Bacteria | 24071 |
| 102 | Ga0265325_10000893 | 3300031241 | Bacteria | 21555 |
| 103 | Ga0265339_10017960 | 3300031249 | Bacteria | 4180 |
| 104 | Ga0265316_10002324 | 3300031344 | Bacteria | 19880 |
| 105 | Ga0265313_10007632 | 3300031595 | Bacteria | 7337 |
| 106 | Ga0265342_10000688 | 3300031712 | Bacteria | 35355 |
| 107 | Ga0265342_10082919 | 3300031712 | Bacteria | 1849 |
| 108 | Ga0316576_10275005 | 3300031727 | Bacteria | 1262 |
| 109 | Ga0316577_10095259 | 3300031733 | Bacteria | 1667 |
| 110 | Ga0307406_10323989 | 3300031901 | Bacteria | 1193 |
| 111 | Ga0373937_0037729 | 3300036401 | Bacteria | 4404 |
| 112 | Ga0316582_0018403 | 3300036647 | Bacteria | 4066 |
| 113 | Ga0316582_0238208 | 3300036647 | Bacteria | 1246 |
| 114 | Ga0395905_0068425 | 3300037471 | Bacteria | 3326 |
| 115 | Ga0436364_0093057 | 3300037853 | Bacteria | 6447 |
| 116 | Ga0436364_0647184 | 3300037853 | Bacteria | 11156 |
| 117 | Ga0436364_1297266 | 3300037853 | Bacteria | 4456 |
| 118 | Ga0436364_1316340 | 3300037853 | Bacteria | 2756 |
| 119 | Ga0395901_0046053 | 3300038443 | Bacteria | 4529 |
| 120 | Ga0436365_0039623 | 3300039437 | Bacteria | 3156 |
| 121 | Ga0436363_0235371 | 3300039450 | Bacteria | 2606 |
| 122 | Ga0436363_1136406 | 3300039450 | Bacteria | 6999 |
| 123 | Ga0436362_0340527 | 3300039453 | Bacteria | 12975 |
| 124 | Ga0436362_0490025 | 3300039453 | Bacteria | 1065 |
| 125 | Ga0453683_0021455 | 3300044673 | Bacteria | 4124 |
| 126 | Ga0466963_0051281 | 3300044694 | Bacteria | 2735 |
| 127 | Ga0453684_0000272 | 3300044712 | Archaea | 222816 |
| 128 | Ga0453684_0000898 | 3300044712 | Archaea | 99227 |
| 129 | Ga0453684_0008174 | 3300044712 | Archaea | 18876 |
| 130 | Ga0453684_0025613 | 3300044712 | Archaea | 8560 |
| 131 | Ga0453684_0038327 | 3300044712 | Archaea | 6555 |
| 132 | Ga0453684_0063003 | 3300044712 | Bacteria | 4746 |
| 133 | Ga0453684_0110899 | 3300044712 | Bacteria | 3333 |
| 134 | Ga0453684_0295587 | 3300044712 | Bacteria | 1842 |
| 135 | Ga0453684_0314497 | 3300044712 | Bacteria | 1775 |
| 136 | Ga0451576_0049226 | 3300045051 | Bacteria | 4422 |
| 137 | Ga0466967_0477146 | 3300045976 | Bacteria | 1221 |
| 138 | Ga0495630_0001516 | 3300046517 | Bacteria | 16077 |
| 139 | Ga0495640_0014145 | 3300046533 | Bacteria | 6049 |
| 140 | Ga0495634_0010704 | 3300046642 | Bacteria | 6713 |
| 141 | Ga0495676_0181415 | 3300047321 | Bacteria | 1475 |
| 142 | Ga0496109_0243572 | 3300048912 | Bacteria | 1692 |
| 143 | Ga0496111_0185018 | 3300048914 | Bacteria | 1549 |
| 144 | Ga0496112_0025377 | 3300048915 | Bacteria | 5691 |
| 145 | Ga0496125_0000015 | 3300048928 | Bacteria | 516648 |
| 146 | Ga0501036_0149240 | 3300049572 | Bacteria | 1972 |
| 147 | Ga0501037_0014178 | 3300049573 | Bacteria | 5868 |
| 148 | Ga0501039_0076827 | 3300049575 | Bacteria | 2596 |
| 149 | Ga0501041_0059392 | 3300049577 | Bacteria | 2340 |
| 150 | Ga0501042_0003674 | 3300049578 | Bacteria | 9673 |
| 151 | Ga0501076_0178923 | 3300049592 | Bacteria | 1729 |
| 152 | Ga0501080_0204487 | 3300049742 | Bacteria | 1812 |
| 153 | Ga0501035_0042161 | 3300049822 | Bacteria | 4117 |
| 154 | nmdc:mga00v17_57969_c1 | 3300050491 | Bacteria | 2370 |
| 155 | nmdc:mga09592_300374_c1 | 3300050508 | Bacteria | 1392 |
| 156 | nmdc:mga08y16_197886_c1 | 3300050511 | Bacteria | 2083 |
| 157 | nmdc:mga08x19_129380_c1 | 3300050514 | Bacteria | 1697 |
| 158 | Ga0500643_000671 | 3300053087 | Bacteria | 22910 |
| 159 | Ga0530510_0026450 | 3300061734 | Bacteria | 4154 |
Family Sequences
| Sample | Scaffold | Protein | Protein Length | |
|---|---|---|---|---|
| 1 | 3300009094 | Ga0111539_10190124 | Ga0111539_101901241 | 300 |
| 2 | 3300009098 | Ga0105245_10057339 | Ga0105245_100573393 | 300 |
| 3 | 3300050511 | nmdc:mga08y16_197886_c1 | nmdc:mga08y16_197886_c1_148_1170 | 300 |
| 4 | 3300005981 | Ga0081538_10019058 | Ga0081538_100190587 | 305 |
| 5 | 3300039453 | Ga0436362_0490025 | Ga0436362_0490025_54_1043 | 305 |
| 6 | 3300005459 | Ga0068867_100123844 | Ga0068867_1001238442 | 316 |
| 7 | 3300006881 | Ga0068865_100152407 | Ga0068865_1001524072 | 316 |
| 8 | 3300009148 | Ga0105243_10068852 | Ga0105243_100688523 | 316 |
| 9 | 3300009176 | Ga0105242_10071005 | Ga0105242_100710052 | 316 |
| 10 | 3300009551 | Ga0105238_10063333 | Ga0105238_100633333 | 316 |
| 11 | 3300009553 | Ga0105249_10133479 | Ga0105249_101334792 | 316 |
| 12 | 3300013297 | Ga0157378_10017130 | Ga0157378_100171305 | 316 |
| 13 | 3300014969 | Ga0157376_10537601 | Ga0157376_105376011 | 316 |
| 14 | 3300025924 | Ga0207694_10179466 | Ga0207694_101794662 | 316 |
| 15 | 3300025938 | Ga0207704_10007712 | Ga0207704_100077124 | 316 |
| 16 | 3300021388 | Ga0213875_10077573 | Ga0213875_100775732 | 317 |
| 17 | 3300005355 | Ga0070671_100020893 | Ga0070671_1000208932 | 319 |
| 18 | 3300005546 | Ga0070696_100015788 | Ga0070696_1000157882 | 319 |
| 19 | 3300005843 | Ga0068860_100017841 | Ga0068860_1000178412 | 319 |
| 20 | 3300006844 | Ga0075428_100048581 | Ga0075428_1000485814 | 319 |
| 21 | 3300025922 | Ga0207646_10124432 | Ga0207646_101244322 | 319 |
| 22 | 3300025931 | Ga0207644_10064543 | Ga0207644_100645432 | 319 |
| 23 | 3300028381 | Ga0268264_10008281 | Ga0268264_100082815 | 319 |
| 24 | 3300049592 | Ga0501076_0178923 | Ga0501076_0178923_593_1588 | 319 |
| 25 | 3300050508 | nmdc:mga09592_300374_c1 | nmdc:mga09592_300374_c1_349_1344 | 319 |
| 26 | 3300005468 | Ga0070707_100066038 | Ga0070707_1000660382 | 320 |
| 27 | 3300025910 | Ga0207684_10140050 | Ga0207684_101400501 | 320 |
| 28 | 3300025922 | Ga0207646_10188933 | Ga0207646_101889332 | 320 |
| 29 | 3300005467 | Ga0070706_100186414 | Ga0070706_1001864142 | 321 |
| 30 | 3300005544 | Ga0070686_100031291 | Ga0070686_1000312912 | 321 |
| 31 | 3300005548 | Ga0070665_100006752 | Ga0070665_10000675210 | 321 |
| 32 | 3300005577 | Ga0068857_100246083 | Ga0068857_1002460832 | 321 |
| 33 | 3300005985 | Ga0081539_10011465 | Ga0081539_100114653 | 321 |
| 34 | 3300005985 | Ga0081539_10032534 | Ga0081539_100325342 | 321 |
| 35 | 3300006914 | Ga0075436_100147195 | Ga0075436_1001471951 | 321 |
| 36 | 3300009094 | Ga0111539_10019617 | Ga0111539_100196176 | 321 |
| 37 | 3300009147 | Ga0114129_10487474 | Ga0114129_104874742 | 321 |
| 38 | 3300013306 | Ga0163162_10030082 | Ga0163162_100300822 | 321 |
| 39 | 3300013308 | Ga0157375_10047728 | Ga0157375_100477281 | 321 |
| 40 | 3300014325 | Ga0163163_10003902 | Ga0163163_100039025 | 321 |
| 41 | 3300014968 | Ga0157379_10125033 | Ga0157379_101250333 | 321 |
| 42 | 3300017792 | Ga0163161_10219575 | Ga0163161_102195751 | 321 |
| 43 | 3300025961 | Ga0207712_10023692 | Ga0207712_100236923 | 321 |
| 44 | 3300026035 | Ga0207703_10072851 | Ga0207703_100728511 | 321 |
| 45 | 3300026075 | Ga0207708_10054914 | Ga0207708_100549143 | 321 |
| 46 | 3300026088 | Ga0207641_10302679 | Ga0207641_103026791 | 321 |
| 47 | 3300027907 | Ga0207428_10065475 | Ga0207428_100654751 | 321 |
| 48 | 3300028379 | Ga0268266_10038791 | Ga0268266_100387913 | 321 |
| 49 | 3300031235 | Ga0265330_10000566 | Ga0265330_100005663 | 321 |
| 50 | 3300031241 | Ga0265325_10000893 | Ga0265325_1000089314 | 321 |
| 51 | 3300031249 | Ga0265339_10017960 | Ga0265339_100179602 | 321 |
| 52 | 3300031344 | Ga0265316_10002324 | Ga0265316_100023244 | 321 |
| 53 | 3300031595 | Ga0265313_10007632 | Ga0265313_100076323 | 321 |
| 54 | 3300031712 | Ga0265342_10000688 | Ga0265342_1000068820 | 321 |
| 55 | 3300031712 | Ga0265342_10082919 | Ga0265342_100829192 | 321 |
| 56 | 3300031727 | Ga0316576_10275005 | Ga0316576_102750052 | 321 |
| 57 | 3300031901 | Ga0307406_10323989 | Ga0307406_103239891 | 321 |
| 58 | 3300036401 | Ga0373937_0037729 | Ga0373937_0037729_2305_3288 | 321 |
| 59 | 3300036647 | Ga0316582_0238208 | Ga0316582_0238208_52_1119 | 321 |
| 60 | 3300037471 | Ga0395905_0068425 | Ga0395905_0068425_21_1010 | 321 |
| 61 | 3300038443 | Ga0395901_0046053 | Ga0395901_0046053_638_1627 | 321 |
| 62 | 3300044673 | Ga0453683_0021455 | Ga0453683_0021455_1119_2174 | 321 |
| 63 | 3300044694 | Ga0466963_0051281 | Ga0466963_0051281_558_1580 | 321 |
| 64 | 3300044712 | Ga0453684_0063003 | Ga0453684_0063003_2104_3132 | 321 |
| 65 | 3300044712 | Ga0453684_0110899 | Ga0453684_0110899_759_1832 | 321 |
| 66 | 3300045051 | Ga0451576_0049226 | Ga0451576_0049226_2983_4056 | 321 |
| 67 | 3300048915 | Ga0496112_0025377 | Ga0496112_0025377_3461_4567 | 321 |
| 68 | 3300049572 | Ga0501036_0149240 | Ga0501036_0149240_260_1282 | 321 |
| 69 | 3300049573 | Ga0501037_0014178 | Ga0501037_0014178_1051_2073 | 321 |
| 70 | 3300049575 | Ga0501039_0076827 | Ga0501039_0076827_1392_2414 | 321 |
| 71 | 3300049577 | Ga0501041_0059392 | Ga0501041_0059392_982_2004 | 321 |
| 72 | 3300049578 | Ga0501042_0003674 | Ga0501042_0003674_7487_8509 | 321 |
| 73 | 3300049822 | Ga0501035_0042161 | Ga0501035_0042161_2453_3475 | 321 |
| 74 | 3300005468 | Ga0070707_100045442 | Ga0070707_1000454423 | 322 |
| 75 | 3300005564 | Ga0070664_100027063 | Ga0070664_1000270634 | 322 |
| 76 | 3300005614 | Ga0068856_100005385 | Ga0068856_1000053851 | 322 |
| 77 | 3300005614 | Ga0068856_100046093 | Ga0068856_1000460933 | 322 |
| 78 | 3300006028 | Ga0070717_10148144 | Ga0070717_101481442 | 322 |
| 79 | 3300006844 | Ga0075428_100236447 | Ga0075428_1002364472 | 322 |
| 80 | 3300006844 | Ga0075428_100240658 | Ga0075428_1002406581 | 322 |
| 81 | 3300013105 | Ga0157369_10304249 | Ga0157369_103042492 | 322 |
| 82 | 3300013296 | Ga0157374_10081592 | Ga0157374_100815921 | 322 |
| 83 | 3300013307 | Ga0157372_10180208 | Ga0157372_101802082 | 322 |
| 84 | 3300025922 | Ga0207646_10125261 | Ga0207646_101252611 | 322 |
| 85 | 3300026078 | Ga0207702_10009796 | Ga0207702_100097969 | 322 |
| 86 | 3300037853 | Ga0436364_1316340 | Ga0436364_1316340_484_1527 | 322 |
| 87 | 3300044712 | Ga0453684_0000272 | Ga0453684_0000272_2281_3327 | 322 |
| 88 | 3300044712 | Ga0453684_0000898 | Ga0453684_0000898_3555_4601 | 322 |
| 89 | 3300044712 | Ga0453684_0008174 | Ga0453684_0008174_17134_18180 | 322 |
| 90 | 3300044712 | Ga0453684_0025613 | Ga0453684_0025613_3038_4084 | 322 |
| 91 | 3300044712 | Ga0453684_0038327 | Ga0453684_0038327_2346_3392 | 322 |
| 92 | 3300044712 | Ga0453684_0314497 | Ga0453684_0314497_629_1675 | 322 |
| 93 | 3300048928 | Ga0496125_0000015 | Ga0496125_0000015_250693_251676 | 322 |
| 94 | 3300049742 | Ga0501080_0204487 | Ga0501080_0204487_416_1507 | 322 |
| 95 | 3300053087 | Ga0500643_000671 | Ga0500643_000671_6945_7979 | 322 |
| 96 | 3300061734 | Ga0530510_0026450 | Ga0530510_0026450_614_1705 | 322 |
| 97 | 3300005328 | Ga0070676_10111259 | Ga0070676_101112591 | 323 |
| 98 | 3300005365 | Ga0070688_100003652 | Ga0070688_1000036529 | 323 |
| 99 | 3300005366 | Ga0070659_100058395 | Ga0070659_1000583953 | 323 |
| 100 | 3300005367 | Ga0070667_100153218 | Ga0070667_1001532182 | 323 |
| 101 | 3300005438 | Ga0070701_10078403 | Ga0070701_100784031 | 323 |
| 102 | 3300005441 | Ga0070700_100163027 | Ga0070700_1001630271 | 323 |
| 103 | 3300005548 | Ga0070665_100000027 | Ga0070665_10000002722 | 323 |
| 104 | 3300005548 | Ga0070665_100191051 | Ga0070665_1001910512 | 323 |
| 105 | 3300005616 | Ga0068852_100037036 | Ga0068852_1000370362 | 323 |
| 106 | 3300005617 | Ga0068859_100029947 | Ga0068859_1000299473 | 323 |
| 107 | 3300005617 | Ga0068859_100033406 | Ga0068859_1000334066 | 323 |
| 108 | 3300005618 | Ga0068864_100002446 | Ga0068864_1000024466 | 323 |
| 109 | 3300005840 | Ga0068870_10038328 | Ga0068870_100383282 | 323 |
| 110 | 3300005841 | Ga0068863_100000233 | Ga0068863_10000023319 | 323 |
| 111 | 3300005842 | Ga0068858_100084348 | Ga0068858_1000843481 | 323 |
| 112 | 3300006028 | Ga0070717_10175572 | Ga0070717_101755722 | 323 |
| 113 | 3300006844 | Ga0075428_100071551 | Ga0075428_1000715512 | 323 |
| 114 | 3300006931 | Ga0097620_100029947 | Ga0097620_1000299473 | 323 |
| 115 | 3300006931 | Ga0097620_100033404 | Ga0097620_1000334046 | 323 |
| 116 | 3300009093 | Ga0105240_10012334 | Ga0105240_100123346 | 323 |
| 117 | 3300009101 | Ga0105247_10008889 | Ga0105247_100088895 | 323 |
| 118 | 3300009148 | Ga0105243_10080623 | Ga0105243_100806232 | 323 |
| 119 | 3300014326 | Ga0157380_10143418 | Ga0157380_101434181 | 323 |
| 120 | 3300017792 | Ga0163161_10063816 | Ga0163161_100638164 | 323 |
| 121 | 3300021358 | Ga0213873_10012613 | Ga0213873_100126132 | 323 |
| 122 | 3300021384 | Ga0213876_10064007 | Ga0213876_100640072 | 323 |
| 123 | 3300025907 | Ga0207645_10101297 | Ga0207645_101012972 | 323 |
| 124 | 3300025911 | Ga0207654_10145092 | Ga0207654_101450921 | 323 |
| 125 | 3300025919 | Ga0207657_10068966 | Ga0207657_100689661 | 323 |
| 126 | 3300025933 | Ga0207706_10126610 | Ga0207706_101266102 | 323 |
| 127 | 3300025936 | Ga0207670_10166768 | Ga0207670_101667681 | 323 |
| 128 | 3300025960 | Ga0207651_10051406 | Ga0207651_100514063 | 323 |
| 129 | 3300025986 | Ga0207658_10192335 | Ga0207658_101923352 | 323 |
| 130 | 3300026035 | Ga0207703_10029483 | Ga0207703_100294833 | 323 |
| 131 | 3300026067 | Ga0207678_10053510 | Ga0207678_100535101 | 323 |
| 132 | 3300026075 | Ga0207708_10107630 | Ga0207708_101076302 | 323 |
| 133 | 3300026088 | Ga0207641_10000233 | Ga0207641_1000023341 | 323 |
| 134 | 3300026095 | Ga0207676_10133661 | Ga0207676_101336611 | 323 |
| 135 | 3300026116 | Ga0207674_10024891 | Ga0207674_100248917 | 323 |
| 136 | 3300027907 | Ga0207428_10024266 | Ga0207428_100242661 | 323 |
| 137 | 3300028379 | Ga0268266_10000050 | Ga0268266_10000050260 | 323 |
| 138 | 3300030878 | Ga0265770_1009080 | Ga0265770_10090802 | 323 |
| 139 | 3300037853 | Ga0436364_0093057 | Ga0436364_0093057_431_1495 | 323 |
| 140 | 3300037853 | Ga0436364_0647184 | Ga0436364_0647184_1872_2900 | 323 |
| 141 | 3300037853 | Ga0436364_1297266 | Ga0436364_1297266_1178_2266 | 323 |
| 142 | 3300039437 | Ga0436365_0039623 | Ga0436365_0039623_511_1575 | 323 |
| 143 | 3300039450 | Ga0436363_0235371 | Ga0436363_0235371_314_1369 | 323 |
| 144 | 3300039450 | Ga0436363_1136406 | Ga0436363_1136406_5031_6095 | 323 |
| 145 | 3300039453 | Ga0436362_0340527 | Ga0436362_0340527_11332_12396 | 323 |
| 146 | 3300044712 | Ga0453684_0295587 | Ga0453684_0295587_304_1383 | 323 |
| 147 | 3300045976 | Ga0466967_0477146 | Ga0466967_0477146_15_1052 | 323 |
| 148 | 3300046517 | Ga0495630_0001516 | Ga0495630_0001516_10980_11996 | 323 |
| 149 | 3300046533 | Ga0495640_0014145 | Ga0495640_0014145_2049_3065 | 323 |
| 150 | 3300046642 | Ga0495634_0010704 | Ga0495634_0010704_3076_4092 | 323 |
| 151 | 3300047321 | Ga0495676_0181415 | Ga0495676_0181415_286_1302 | 323 |
| 152 | 3300048912 | Ga0496109_0243572 | Ga0496109_0243572_26_1042 | 323 |
| 153 | 3300048914 | Ga0496111_0185018 | Ga0496111_0185018_104_1141 | 323 |
| 154 | 3300050491 | nmdc:mga00v17_57969_c1 | nmdc:mga00v17_57969_c1_165_1178 | 323 |
| 155 | 3300050514 | nmdc:mga08x19_129380_c1 | nmdc:mga08x19_129380_c1_43_1143 | 323 |
| 156 | 3300005290 | Ga0065712_10097554 | Ga0065712_100975541 | 324 |
| 157 | 3300028556 | Ga0265337_1004825 | Ga0265337_10048256 | 324 |
| 158 | 3300031733 | Ga0316577_10095259 | Ga0316577_100952592 | 324 |
| 159 | 3300036647 | Ga0316582_0018403 | Ga0316582_0018403_1110_2123 | 324 |
Functional Annotation
PFAM ID
Name
Description
Start Position
End Position
Accuracy
Structural Annotation
Top 5 Hits
| ID | Description | Score | Start | End |
|---|---|---|---|---|
| 1rpn-assembly3.cif.gz_C | crystal structure of gdp-d-mannose 4,6-dehydratase in complexes with gdp and nadph | 0.9902 | 3 | 324 |
| 1rpn-assembly3.cif.gz_C | crystal structure of gdp-d-mannose 4,6-dehydratase in complexes with gdp and nadph | 0.9872 | 3 | 324 |
| 2z95-assembly1.cif.gz_D | crystal structure of gdp-d-mannose dehydratase from aquifex aeolicus vf5 | 0.9745 | 3 | 320 |
| 1n7h-assembly1.cif.gz_B-2 | crystal structure of gdp-mannose 4,6-dehydratase ternary complex with nadph and gdp | 0.9736 | 4 | 323 |
| 1n7g-assembly1.cif.gz_B | crystal structure of the gdp-mannose 4,6-dehydratase ternary complex with nadph and gdp-rhamnose. | 0.9719 | 4 | 323 |
| ID | Description | Score | Start | End | Superfamily |
|---|---|---|---|---|---|
| af_P0AC88_3_270_3.40.50.720 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain | 0.966 | 4 | 262 | 3.40.50.720 |
| af_F1QPT3_45_368_3.40.50.720 | Alpha Beta;3-Layer(aba) Sandwich;Rossmann fold;NAD(P)-binding Rossmann-like Domain | 0.9654 | 27 | 317 | 3.40.50.720 |
| af_Q4D941_50_182_3.90.25.10 | Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 | 0.9594 | 187 | 300 | 3.90.25.10 |
| 1n7gB01 | Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 | 0.9399 | 187 | 323 | 3.90.25.10 |
| 1rpnA02 | Alpha Beta;Alpha-Beta Complex;UDP-galactose 4-epimerase; domain 1;UDP-galactose 4-epimerase, domain 1 | 0.9337 | 187 | 324 | 3.90.25.10 |
| ID | Description | Score | Start | End | GO Terms |
|---|---|---|---|---|---|
| AF-A0A146LA67-F1-model_v4 | GDP-mannose 4,6-dehydratase (EC 4.2.1.47) (GDP-D-mannose dehydratase) | 0.9977 | 119 | 265 |
GO:0008446
GO:0042351 |
| AF-Q7WSX2-F1-model_v4 | GDP-mannose 4,6-dehydratase (EC 4.2.1.47) | 0.997 | 155 | 265 |
GO:0008446
GO:0042351 |
| AF-A0A287VKI9-F1-model_v4 | deleted | 0.995 | 153 | 262 |
|
| AF-X0UM79-F1-model_v4 | GDP-mannose 4,6-dehydratase (EC 4.2.1.47) | 0.9916 | 98 | 294 |
GO:0008446
GO:0042351 |
| AF-A0A846NYP9-F1-model_v4 | deleted | 0.9883 | 146 | 322 |
|
Predicted Structure (AlphaFold2)
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