F231078

General Info

Members Datasets Scaffolds Average Seq Length
159 123 318 309

Family's Representative Sequence

Representative Sequence 3300003323|rootH1_10107819|rootH1_101078194
Length 336
Sequence VFSAWADLREDPRLIEEVPSVSELADKTPAQLLSKEMGITEEDVTRRKRIISAIRDAVVAKSAELTTVFFDYLSGMDEGRVVTGNRAALERARQLKRSHLQAMVQGEYDAAYAHQRIELAMLYSKLGLELRVFLGAFHHLLMSIGKVVEQELASSPSLASETFSSLKKVAFFDIGLIVDVIVFDRERVIRQQQLAIRELSTPVLQIRDRLLLLPIIGVIDTHRARLVTESLLRAIRANRAKVVVMDVTGVATIDSKVANHLIQTVTASRLMGASVIVTGLSAEVAQSLVALGIDLTKLNTVGDLQGGVEEAERSLGFKVVPADPSRSVAVPFALGE

Samples

Sample ID Description Type Environment
1 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
2 3300001979 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6 Metagenome Rhizosphere
3 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
4 3300001990 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3 Metagenome Rhizosphere
5 3300002067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C1 Metagenome Rhizosphere
6 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
7 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
8 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
9 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
10 3300005339 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG Metagenome Rhizosphere
11 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
12 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
13 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
14 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
15 3300005437 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG Metagenome Rhizosphere
16 3300005439 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG Metagenome Rhizosphere
17 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
18 3300005457 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG Metagenome Rhizosphere
19 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
20 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
21 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
22 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
23 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
24 3300005577 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 Metagenome Rhizosphere
25 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
26 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
27 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
28 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
29 3300005719 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 Metagenome Rhizosphere
30 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
31 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
32 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
33 3300006028 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-3 metaG Metagenome Rhizosphere
34 3300006173 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG Metagenome Rhizosphere
35 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
36 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
37 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
38 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
39 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
40 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
41 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
42 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
43 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
44 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
45 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
46 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
47 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
48 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
49 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
50 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
51 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
52 3300021384 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 Metagenome Unclassified
53 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
54 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
55 3300025898 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
56 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
58 3300025911 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
59 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
60 3300025916 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025928 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025929 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025939 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-2 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
75 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
83 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
84 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
85 3300031730 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 19_EM Metagenome Unclassified
86 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
87 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
88 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
89 3300037853 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R8 v2 Metagenome Unclassified
90 3300039437 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R9 v2 Metagenome Unclassified
91 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
92 3300041505 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_9 MetaG Metagenome Unclassified
93 3300041507 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_10 MetaG Metagenome Unclassified
94 3300041509 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR17_6 MetaG Metagenome Unclassified
95 3300041512 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_11 MetaG Metagenome Unclassified
96 3300042005 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512LE14Z062817_5216 Metagenome Rhizosphere
97 3300042012 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0512FE14Z062817_5213 Metagenome Rhizosphere
98 3300042157 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0311LE14Z062817_5210 Metagenome Rhizosphere
99 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
100 3300044706 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA3R Metagenome Rhizosphere
101 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
102 3300044719 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSC1R Metagenome Rhizosphere
103 3300044901 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA4R Metagenome Rhizosphere
104 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
105 3300049515 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - F22_B_5_drought Metagenome Rhizosphere
106 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
107 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
108 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
109 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
110 3300049652 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - B1_A_0_drought Metagenome Rhizosphere
111 3300049660 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D2_B_0_control Metagenome Rhizosphere
112 3300049665 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H4_A_2_drought Metagenome Rhizosphere
113 3300049667 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - G5_B_2_control Metagenome Rhizosphere
114 3300049668 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I4_B_2_drought Metagenome Rhizosphere
115 3300049706 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_B_2_control Metagenome Rhizosphere
116 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
117 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
118 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
119 3300053103 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co1_30_3 endosphere Metagenome Endosphere
120 3300053130 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co2_44_8 endosphere Metagenome Endosphere
121 3300053146 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 endosphere Metagenome Endosphere
122 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
123 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 100
Metatranscriptomes 0
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 4.4
Nodule 0
Rhizoplane 0
Rhizosphere 84.91
Stem 0
Stem Tuber 0
Unclassified 10.06

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootH1_10107819 3300003323 Bacteria 17892
2 JGI24740J21852_10005163 3300001979 Bacteria 5539
3 JGI24739J22299_10003890 3300001989 Bacteria 5708
4 JGI24737J22298_10023039 3300001990 Unclassified 1976
5 JGI24735J21928_10012485 3300002067 Bacteria 2685
6 JGI25153J46596_10000081 3300003215 Bacteria 113081
7 rootH2_10009027 3300003320 Bacteria 4101
8 rootH2_10078131 3300003320 Bacteria 4251
9 rootH1_10032995 3300003323 Bacteria 9374
10 rootH1_10184128 3300003323 Unclassified 2117
11 Ga0070682_100011471 3300005337 Bacteria 5065
12 Ga0068868_100051079 3300005338 Bacteria 3250
13 Ga0070660_100022971 3300005339 Bacteria 4617
14 Ga0070661_100043989 3300005344 Bacteria 3262
15 Ga0070668_100091944 3300005347 Bacteria 2392
16 Ga0070659_100014978 3300005366 Bacteria 5801
17 Ga0070659_100018107 3300005366 Bacteria 5312
18 Ga0070713_100419224 3300005436 Bacteria 1253
19 Ga0070710_10001282 3300005437 Bacteria 11918
20 Ga0070711_100001510 3300005439 Bacteria 12804
21 Ga0070663_100014555 3300005455 Bacteria 5052
22 Ga0070662_100012278 3300005457 Bacteria 5674
23 Ga0070707_100388630 3300005468 Bacteria 1355
24 Ga0068853_100137005 3300005539 Bacteria 2195
25 Ga0070665_100025762 3300005548 Bacteria 5924
26 Ga0070665_100043237 3300005548 Bacteria 4528
27 Ga0068855_100000015 3300005563 Bacteria 223993
28 Ga0068855_100040254 3300005563 Bacteria 5547
29 Ga0070664_100007907 3300005564 Bacteria 8589
30 Ga0068857_100031881 3300005577 Bacteria 4657
31 Ga0068857_100044696 3300005577 Bacteria 3930
32 Ga0068854_100051113 3300005578 Unclassified 2960
33 Ga0068856_100027492 3300005614 Bacteria 5550
34 Ga0068852_100024491 3300005616 Bacteria 4879
35 Ga0068852_100656908 3300005616 Bacteria 1056
36 Ga0068859_100025990 3300005617 Bacteria 5874
37 Ga0068859_100054828 3300005617 Bacteria 4011
38 Ga0068859_100197834 3300005617 Unclassified 2094
39 Ga0068861_100108586 3300005719 Bacteria 2220
40 Ga0068851_10018010 3300005834 Bacteria 3400
41 Ga0068863_100039068 3300005841 Bacteria 4517
42 Ga0068863_100294570 3300005841 Unclassified 1573
43 Ga0068860_100000800 3300005843 Bacteria 35309
44 Ga0068860_100029738 3300005843 Bacteria 5255
45 Ga0070717_10004749 3300006028 Bacteria 9879
46 Ga0070716_100003823 3300006173 Bacteria 7144
47 Ga0097621_100114336 3300006237 Bacteria 2283
48 Ga0068871_100226693 3300006358 Bacteria 1621
49 Ga0097620_100025990 3300006931 Bacteria 5874
50 Ga0097620_100054828 3300006931 Bacteria 4011
51 Ga0097620_100197834 3300006931 Unclassified 2094
52 Ga0099794_10032267 3300007265 Bacteria 2457
53 Ga0105240_10045151 3300009093 Bacteria 5592
54 Ga0105240_10224637 3300009093 Bacteria 2185
55 Ga0105240_10242511 3300009093 Unclassified 2089
56 Ga0114129_10034333 3300009147 Bacteria 7162
57 Ga0105241_10269172 3300009174 Bacteria 1451
58 Ga0105248_10025005 3300009177 Bacteria 6638
59 Ga0105237_10011394 3300009545 Bacteria 9406
60 Ga0105237_10148563 3300009545 Bacteria 2339
61 Ga0105238_10019968 3300009551 Bacteria 6821
62 Ga0105238_10026651 3300009551 Bacteria 5893
63 Ga0105238_10169966 3300009551 Bacteria 2156
64 Ga0105249_10005155 3300009553 Bacteria 11276
65 Ga0105249_10287655 3300009553 Bacteria 1644
66 Ga0105239_10040440 3300010375 Bacteria 5108
67 Ga0105239_10064440 3300010375 Bacteria 4023
68 Ga0105239_10256499 3300010375 Bacteria 1965
69 Ga0105246_10287030 3300011119 Bacteria 1323
70 Ga0157370_10403683 3300013104 Unclassified 1258
71 Ga0157370_10461136 3300013104 Bacteria 1168
72 Ga0157372_10588350 3300013307 Unclassified 1297
73 Ga0163163_10152387 3300014325 Bacteria 2355
74 Ga0157379_10246727 3300014968 Bacteria 1620
75 Ga0213876_10127181 3300021384 Bacteria 1354
76 Ga0209758_1000061 3300025297 Bacteria 320172
77 Ga0207656_10024056 3300025321 Bacteria 2459
78 Ga0207692_10001952 3300025898 Bacteria 7855
79 Ga0207647_10187268 3300025904 Bacteria 1200
80 Ga0207699_10005031 3300025906 Bacteria 6320
81 Ga0207654_10029266 3300025911 Unclassified 3013
82 Ga0207671_10063585 3300025914 Bacteria 2742
83 Ga0207663_10010930 3300025916 Bacteria 4851
84 Ga0207657_10018726 3300025919 Bacteria 6597
85 Ga0207649_10040451 3300025920 Bacteria 2833
86 Ga0207694_10009007 3300025924 Bacteria 7535
87 Ga0207694_10043320 3300025924 Bacteria 3474
88 Ga0207700_10018560 3300025928 Bacteria 4678
89 Ga0207664_10020712 3300025929 Bacteria 4880
90 Ga0207690_10039641 3300025932 Bacteria 3075
91 Ga0207706_10029065 3300025933 Bacteria 4936
92 Ga0207665_10005375 3300025939 Bacteria 8550
93 Ga0207711_10014369 3300025941 Bacteria 6575
94 Ga0207689_10008386 3300025942 Bacteria 9000
95 Ga0207679_10054667 3300025945 Unclassified 2940
96 Ga0207667_10000315 3300025949 Bacteria 67202
97 Ga0207667_10002189 3300025949 Bacteria 24535
98 Ga0207667_10128722 3300025949 Bacteria 2607
99 Ga0207640_10046839 3300025981 Bacteria 2785
100 Ga0207703_10263797 3300026035 Bacteria 1558
101 Ga0207678_10004481 3300026067 Bacteria 12560
102 Ga0207702_10090077 3300026078 Bacteria 2684
103 Ga0207641_10098190 3300026088 Unclassified 2575
104 Ga0207674_10020933 3300026116 Bacteria 7056
105 Ga0207674_10031058 3300026116 Bacteria 5613
106 Ga0207675_100072420 3300026118 Bacteria 3223
107 Ga0207698_10015892 3300026142 Bacteria 5058
108 Ga0268266_10039094 3300028379 Bacteria 4040
109 Ga0268265_10354981 3300028380 Bacteria 1340
110 Ga0268264_10000043 3300028381 Bacteria 371761
111 Ga0268264_10121830 3300028381 Bacteria 2299
112 Ga0307513_10036422 3300031456 Bacteria 5489
113 Ga0307513_10043529 3300031456 Bacteria 4929
114 Ga0307516_10117946 3300031730 Bacteria 2448
115 Ga0395900_0220638 3300037418 Bacteria 1911
116 Ga0395898_0036255 3300037466 Bacteria 4898
117 Ga0395905_0021301 3300037471 Bacteria 6132
118 Ga0395905_0044934 3300037471 Bacteria 4144
119 Ga0436364_0224678 3300037853 Bacteria 1878
120 Ga0436364_0512198 3300037853 Bacteria 3835
121 Ga0436365_0191965 3300039437 Bacteria 59780
122 Ga0436365_1775054 3300039437 Bacteria 1959
123 Ga0436361_0929031 3300039447 Bacteria 1981
124 Ga0451849_1466735 3300041505 Unclassified 2454
125 Ga0451851_0247094 3300041507 Bacteria 2703
126 Ga0451843_0113481 3300041509 Bacteria 1255
127 Ga0451853_0140934 3300041512 Bacteria 16854
128 Ga0439448_0000142 3300042005 Bacteria 13745
129 Ga0439448_0016473 3300042005 Bacteria 2250
130 Ga0439455_0001635 3300042012 Bacteria 3833
131 Ga0439458_0000072 3300042157 Bacteria 18459
132 Ga0466972_0010970 3300044658 Bacteria 4548
133 Ga0466964_0012033 3300044706 Bacteria 3273
134 Ga0453684_0007542 3300044712 Bacteria 19943
135 Ga0453684_0048727 3300044712 Bacteria 5595
136 Ga0466971_0018049 3300044719 Unclassified 3125
137 Ga0466960_0018412 3300044901 Bacteria 3060
138 Ga0466967_0654857 3300045976 Bacteria 1039
139 Ga0501292_001338 3300049515 Unclassified 3032
140 Ga0501043_0173085 3300049579 Bacteria 1684
141 Ga0501047_0007982 3300049581 Bacteria 9980
142 Ga0501047_0073865 3300049581 Bacteria 3283
143 Ga0501070_0149190 3300049586 Unclassified 1929
144 Ga0501073_0000701 3300049589 Bacteria 23621
145 Ga0501202_012993 3300049652 Bacteria 1579
146 Ga0501216_000286 3300049660 Bacteria 5663
147 Ga0501227_000474 3300049665 Bacteria 8562
148 Ga0501230_001476 3300049667 Bacteria 2812
149 Ga0501233_001417 3300049668 Bacteria 4097
150 Ga0501229_000482 3300049706 Bacteria 4513
151 Ga0501044_0081892 3300049823 Bacteria 3266
152 Ga0501044_0173404 3300049823 Bacteria 2127
153 nmdc:mga05p37_649227_c1 3300050507 Bacteria 1182
154 Ga0500651_0045271 3300053093 Bacteria 2769
155 Ga0500555_007768 3300053103 Bacteria 3051
156 Ga0500642_0072166 3300053130 Bacteria 1573
157 Ga0500588_0008326 3300053146 Bacteria 2418
158 Ga0500616_0126304 3300053153 Bacteria 1214
159 Ga0501084_0084732 3300054114 Bacteria 2661
160 rootH1_10107819
161 JGI24740J21852_10005163
162 JGI24739J22299_10003890
163 JGI24737J22298_10023039
164 JGI24735J21928_10012485
165 JGI25153J46596_10000081
166 rootH2_10009027
167 rootH2_10078131
168 rootH1_10032995
169 rootH1_10184128
170 Ga0070682_100011471
171 Ga0068868_100051079
172 Ga0070660_100022971
173 Ga0070661_100043989
174 Ga0070668_100091944
175 Ga0070659_100014978
176 Ga0070659_100018107
177 Ga0070713_100419224
178 Ga0070710_10001282
179 Ga0070711_100001510
180 Ga0070663_100014555
181 Ga0070662_100012278
182 Ga0070707_100388630
183 Ga0068853_100137005
184 Ga0070665_100025762
185 Ga0070665_100043237
186 Ga0068855_100000015
187 Ga0068855_100040254
188 Ga0070664_100007907
189 Ga0068857_100031881
190 Ga0068857_100044696
191 Ga0068854_100051113
192 Ga0068856_100027492
193 Ga0068852_100024491
194 Ga0068852_100656908
195 Ga0068859_100025990
196 Ga0068859_100054828
197 Ga0068859_100197834
198 Ga0068861_100108586
199 Ga0068851_10018010
200 Ga0068863_100039068
201 Ga0068863_100294570
202 Ga0068860_100000800
203 Ga0068860_100029738
204 Ga0070717_10004749
205 Ga0070716_100003823
206 Ga0097621_100114336
207 Ga0068871_100226693
208 Ga0097620_100025990
209 Ga0097620_100054828
210 Ga0097620_100197834
211 Ga0099794_10032267
212 Ga0105240_10045151
213 Ga0105240_10224637
214 Ga0105240_10242511
215 Ga0114129_10034333
216 Ga0105241_10269172
217 Ga0105248_10025005
218 Ga0105237_10011394
219 Ga0105237_10148563
220 Ga0105238_10019968
221 Ga0105238_10026651
222 Ga0105238_10169966
223 Ga0105249_10005155
224 Ga0105249_10287655
225 Ga0105239_10040440
226 Ga0105239_10064440
227 Ga0105239_10256499
228 Ga0105246_10287030
229 Ga0157370_10403683
230 Ga0157370_10461136
231 Ga0157372_10588350
232 Ga0163163_10152387
233 Ga0157379_10246727
234 Ga0213876_10127181
235 Ga0209758_1000061
236 Ga0207656_10024056
237 Ga0207692_10001952
238 Ga0207647_10187268
239 Ga0207699_10005031
240 Ga0207654_10029266
241 Ga0207671_10063585
242 Ga0207663_10010930
243 Ga0207657_10018726
244 Ga0207649_10040451
245 Ga0207694_10009007
246 Ga0207694_10043320
247 Ga0207700_10018560
248 Ga0207664_10020712
249 Ga0207690_10039641
250 Ga0207706_10029065
251 Ga0207665_10005375
252 Ga0207711_10014369
253 Ga0207689_10008386
254 Ga0207679_10054667
255 Ga0207667_10000315
256 Ga0207667_10002189
257 Ga0207667_10128722
258 Ga0207640_10046839
259 Ga0207703_10263797
260 Ga0207678_10004481
261 Ga0207702_10090077
262 Ga0207641_10098190
263 Ga0207674_10020933
264 Ga0207674_10031058
265 Ga0207675_100072420
266 Ga0207698_10015892
267 Ga0268266_10039094
268 Ga0268265_10354981
269 Ga0268264_10000043
270 Ga0268264_10121830
271 Ga0307513_10036422
272 Ga0307513_10043529
273 Ga0307516_10117946
274 Ga0395900_0220638
275 Ga0395898_0036255
276 Ga0395905_0021301
277 Ga0395905_0044934
278 Ga0436364_0224678
279 Ga0436364_0512198
280 Ga0436365_0191965
281 Ga0436365_1775054
282 Ga0436361_0929031
283 Ga0451849_1466735
284 Ga0451851_0247094
285 Ga0451843_0113481
286 Ga0451853_0140934
287 Ga0439448_0000142
288 Ga0439448_0016473
289 Ga0439455_0001635
290 Ga0439458_0000072
291 Ga0466972_0010970
292 Ga0466964_0012033
293 Ga0453684_0007542
294 Ga0453684_0048727
295 Ga0466971_0018049
296 Ga0466960_0018412
297 Ga0466967_0654857
298 Ga0501292_001338
299 Ga0501043_0173085
300 Ga0501047_0007982
301 Ga0501047_0073865
302 Ga0501070_0149190
303 Ga0501073_0000701
304 Ga0501202_012993
305 Ga0501216_000286
306 Ga0501227_000474
307 Ga0501230_001476
308 Ga0501233_001417
309 Ga0501229_000482
310 Ga0501044_0081892
311 Ga0501044_0173404
312 nmdc:mga05p37_649227_c1
313 Ga0500651_0045271
314 Ga0500555_007768
315 Ga0500642_0072166
316 Ga0500588_0008326
317 Ga0500616_0126304
318 Ga0501084_0084732

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01740

STAS

STAS domain

201

304

0.96

PF11563

Protoglobin

Protoglobin

30

187

0.92

Structural Annotation

Top 5 Hits

ID Description Score Start End
6jhk-assembly1.cif.gz_A crystal structure of bacillus subtilis rsbs 0.9565 185 298
6jhk-assembly1.cif.gz_A crystal structure of bacillus subtilis rsbs 0.9327 185 298
6qcm-assembly1.cif.gz_d cryo em structure of the listeria stressosome 0.9222 185 300
6qcm-assembly1.cif.gz_I cryo em structure of the listeria stressosome 0.9084 185 300
6qcm-assembly1.cif.gz_d cryo em structure of the listeria stressosome 0.9002 185 300
ID Description Score Start End Superfamily
af_A0A0N7KGR6_2_88_3.30.750.24 Alpha Beta;2-Layer Sandwich;Transcription Regulator spoIIAA;STAS domain 0.9072 225 300 3.30.750.24
af_I1KA21_504_648_3.30.750.24 Alpha Beta;2-Layer Sandwich;Transcription Regulator spoIIAA;STAS domain 0.8862 189 297 3.30.750.24
2w31B00 Mainly Alpha;Orthogonal Bundle;Globin-like;Globins 0.8825 20 164 1.10.490.10
af_Q9VA55_523_627_3.30.750.24 Alpha Beta;2-Layer Sandwich;Transcription Regulator spoIIAA;STAS domain 0.8776 194 278 3.30.750.24
af_Q55FJ8_836_995_3.30.750.24 Alpha Beta;2-Layer Sandwich;Transcription Regulator spoIIAA;STAS domain 0.8775 189 295 3.30.750.24
ID Description Score Start End GO Terms
AF-A0A1I1NNQ9-F1-model_v4 Anti-anti-sigma factor 0.9603 189 300
AF-A0A7Z0V3A2-F1-model_v4 deleted 0.9493 190 309
AF-A0A2G2CUV5-F1-model_v4 deleted 0.9475 189 300
AF-A0A7Z0V3A2-F1-model_v4 deleted 0.9417 190 309
AF-A0A017T942-F1-model_v4 RsbR, positive regulator of sigma-B 0.939 185 301

Map