F230360

General Info

Members Datasets Scaffolds Average Seq Length
158 109 316 290

Family's Representative Sequence

Representative Sequence 3300045051|Ga0451576_0485873|Ga0451576_0485873_297_1247
Length 316
Sequence MQPTGPMAGSIPVPPRPPGAPEGRSYPAPSAVAELLKPITWFPPMWAFGCGVVASGVPLEGRWAMVATGVLLAGPLVCATSQAVNDWFDRHVDAINEPQRPIPSGRMPGRWGLGVAIVWTLLSLLVAATLGPVGFGAAVVGLALAWAYSAPPLRLKRNGWWGNLACGVCYEGLAWVTGAAVMAGGGWPSGASLALAALYSLGAHGIMTLNDFKSIPGDLRTGIRSLPVQLGPRGAALAACATMAVPQVVVVGLLWTLGHPVHAAIVAGLLGAQLVLMRRFVAAPVERATWYSALGINFFVLGMLASAFALRAGSAP

Samples

Sample ID Description Type Environment
1 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
2 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
3 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
4 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
5 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
6 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
7 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
8 3300005834 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 Metagenome Rhizosphere
9 3300006038 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 Metagenome Endosphere
10 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
11 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
12 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
13 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
14 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
15 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
16 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
17 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
18 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
19 3300025938 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 (SPAdes) (version 2) Metagenome Rhizosphere
20 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
21 3300025941 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
22 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
23 3300026067 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
24 3300027526 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Inoculated plant M2 AM (SPAdes) (version 2) Metagenome Rhizosphere
25 3300027695 Arabidopsis thaliana rhizosphere microbial communities from the Joint Genome Institute, USA, that affect carbon cycling - Rhizosphere soil Co-N PM (SPAdes) (version 2) Metagenome Rhizosphere
26 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
27 3300028563 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-8-24 metaG Metagenome Rhizosphere
28 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
29 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
30 3300028666 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-19 metaG Metagenome Rhizosphere
31 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
32 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
33 3300031239 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-24 metaG Metagenome Rhizosphere
34 3300031247 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-25 metaG Metagenome Rhizosphere
35 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
36 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
37 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
38 3300031665 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 Metagenome Rhizosphere
39 3300031691 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_160517rDrA Metagenome Rhizosphere
40 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
41 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
42 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
43 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
44 3300031733 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_050615r2r1 Metagenome Rhizosphere
45 3300032137 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SCrBrC Metagenome Rhizosphere
46 3300032139 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB Metagenome Rhizosphere
47 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
48 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
49 3300033524 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_160517rDrB (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
50 3300033528 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
51 3300033541 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
52 3300035398 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_050615r2r1 Metagenome Rhizosphere
53 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
54 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
55 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
56 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
57 3300039450 Root-associated microbial communities from Barbacenia macrantha in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R7 v2 Metagenome Unclassified
58 3300041501 White clover root microbial community from Lincoln, Canterbury, New Zealand - WCR18_7 MetaG Metagenome Unclassified
59 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
60 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
61 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
62 3300046501 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co3_27_41 rhizosphere Metagenome Rhizosphere
63 3300046529 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-866-CL2_50_11 rhizosphere Metagenome Rhizosphere
64 3300047444 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-9591-CL2_56_12 rhizosphere Metagenome Rhizosphere
65 3300047471 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - SKWD-24-1-CL2_58_25 rhizosphere Metagenome Rhizosphere
66 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
67 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
68 3300048911 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_8v unlabeled Metagenome Rhizoplane
69 3300048913 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_4c N15 Metagenome Rhizoplane
70 3300048927 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW root_4e N15 Metagenome Unclassified
71 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
72 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
73 3300049570 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_03 Metagenome Rhizosphere
74 3300049572 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_03 Metagenome Rhizosphere
75 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
76 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
77 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
78 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
79 3300050492 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. deltoides DD176-5 re-annotation Metagenome Endosphere
80 3300050494 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 re-annotation Metagenome Endosphere
81 3300053080 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-905-CL1_32_20 endosphere Metagenome Endosphere
82 3300053118 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-360-Co3_13_34 endosphere Metagenome Endosphere
83 3300053121 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 endosphere Metagenome Endosphere
84 3300053123 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-845-CL3_80_19 endosphere Metagenome Endosphere
85 3300053131 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co3_35_48 endosphere Metagenome Endosphere
86 3300053136 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-133-CL2_62_7 endosphere Metagenome Endosphere
87 3300053153 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 endosphere Metagenome Endosphere
88 3300053156 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 endosphere Metagenome Endosphere
89 3300053177 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - GW-11047-CL1_23_5 endosphere Metagenome Endosphere
90 3300053739 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co1_10_3 endosphere Metagenome Endosphere
91 2643221585 Pelomonas sp. Root662 Isolate Unclassified
92 2643221653 Rhizobium sp. Root1240 Isolate Unclassified
93 2643221654 Rhizobacter sp. Root404 Isolate Unclassified
94 2643221656 Pelomonas sp. Root405 Isolate Unclassified
95 2643221660 Methylibium sp. Root1272 Isolate Unclassified
96 2643221719 Rhizobium sp. Root274 Isolate Unclassified
97 2738541275 Novosphingobium sp. GV027 Isolate Unclassified
98 2738541301 Novosphingobium sp. GV079 Isolate Unclassified
99 2738541304 Novosphingobium sp. GV061 Isolate Unclassified
100 2738543022 Novosphingobium sp. GV055 Isolate Unclassified
101 2738543033 Novosphingobium sp. GV064 Isolate Unclassified
102 2818991272 Rhizobium sp. SLBN-4 Isolate Unclassified
103 2837678835 Jiella endophytica CBS5Q-3 Isolate Unclassified
104 2894772417 Roseomonas oryzicola KCTC 22478 Isolate Rhizosphere
105 2928100450 Novosphingobium sp. 1529 Isolate Rhizosphere
106 2928959182 Novosphingobium capsulatum 1057 Isolate Unclassified
107 2989776772 Rhizobium glycinendophyticum CL12 Isolate Unclassified
108 8005246636 Rhizobium wuzhouense W44 Isolate Rhizosphere
109 8045864390 Aurantimonas endophytica KCTC 52296 Isolate Unclassified

Type Distribution

Type Percentage (%)
Metagenomes 84.81
Metatranscriptomes 3.16
Isolates 12.03

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 12.03
Nodule 0
Rhizoplane 2.53
Rhizosphere 69.62
Stem 0
Stem Tuber 0
Unclassified 0

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0451576_0485873 3300045051 Bacteria 1297
2 JGI25153J46596_10008156 3300003215 Bacteria 5044
3 JGI25160J50197_1009226 3300003354 Bacteria 3679
4 Ga0070668_100060022 3300005347 Bacteria 2944
5 Ga0070671_100008366 3300005355 Bacteria 8287
6 Ga0070673_100273287 3300005364 Bacteria 1480
7 Ga0070672_100123710 3300005543 Bacteria 2120
8 Ga0068851_10031421 3300005834 Bacteria 2637
9 Ga0075365_10006562 3300006038 Bacteria 6416
10 Ga0075367_10134691 3300006178 Bacteria 1528
11 Ga0105240_10129542 3300009093 Bacteria 3028
12 Ga0105248_10176750 3300009177 Bacteria 2405
13 Ga0105238_10502238 3300009551 Bacteria 1214
14 Ga0105239_10137291 3300010375 Bacteria 2722
15 Ga0163163_10397060 3300014325 Bacteria 1437
16 Ga0209758_1000557 3300025297 Bacteria 58827
17 Ga0209758_1035535 3300025297 Bacteria 1962
18 Ga0207426_1006272 3300025302 Bacteria 5201
19 Ga0207669_10057209 3300025937 Bacteria 2373
20 Ga0207704_10427692 3300025938 Bacteria 1051
21 Ga0207691_10104352 3300025940 Bacteria 2526
22 Ga0207711_10508620 3300025941 Bacteria 1123
23 Ga0207668_10054052 3300025972 Bacteria 2786
24 Ga0207678_10436634 3300026067 Bacteria 1137
25 Ga0209968_1001081 3300027526 Bacteria 4156
26 Ga0209966_1000013 3300027695 Bacteria 83121
27 Ga0268266_10048794 3300028379 Bacteria 3629
28 Ga0265319_1001616 3300028563 Bacteria 13137
29 Ga0265334_10017457 3300028573 Bacteria 2962
30 Ga0265323_10002057 3300028653 Bacteria 9437
31 Ga0265336_10005106 3300028666 Bacteria 4882
32 Ga0265338_10000081 3300028800 Bacteria 176402
33 Ga0265324_10003064 3300029957 Bacteria 8154
34 Ga0265328_10023651 3300031239 Bacteria 2329
35 Ga0265328_10025250 3300031239 Bacteria 2239
36 Ga0265340_10008351 3300031247 Bacteria 5594
37 Ga0265340_10010485 3300031247 Bacteria 4955
38 Ga0265339_10007113 3300031249 Bacteria 7266
39 Ga0265331_10097054 3300031250 Bacteria 1359
40 Ga0265327_10005917 3300031251 Bacteria 9989
41 Ga0265327_10011604 3300031251 Bacteria 6044
42 Ga0316575_10002773 3300031665 Bacteria 5921
43 Ga0316579_10004410 3300031691 Bacteria 5583
44 Ga0316579_10007744 3300031691 Bacteria 4449
45 Ga0265314_10010213 3300031711 Bacteria 7855
46 Ga0265314_10014814 3300031711 Bacteria 6217
47 Ga0265342_10013875 3300031712 Bacteria 5376
48 Ga0316576_10000980 3300031727 Bacteria 14661
49 Ga0316576_10001052 3300031727 Bacteria 14328
50 Ga0316576_10023882 3300031727 Bacteria 4264
51 Ga0316576_10026221 3300031727 Bacteria 4088
52 Ga0316576_10060697 3300031727 Bacteria 2770
53 Ga0316576_10197077 3300031727 Bacteria 1517
54 Ga0316578_10008276 3300031728 Bacteria 5282
55 Ga0316578_10191747 3300031728 Bacteria 1231
56 Ga0316578_10204185 3300031728 Bacteria 1189
57 Ga0316577_10000523 3300031733 Bacteria 15428
58 Ga0316577_10005364 3300031733 Bacteria 6718
59 Ga0316577_10030161 3300031733 Bacteria 3028
60 Ga0316585_10000478 3300032137 Bacteria 9436
61 Ga0316585_10001522 3300032137 Bacteria 6125
62 Ga0316580_10000394 3300032139 Bacteria 9875
63 Ga0316593_10042814 3300032168 Bacteria 1511
64 Ga0307510_10006334 3300033180 Bacteria 14124
65 Ga0307510_10038638 3300033180 Bacteria 5274
66 Ga0316592_1028126 3300033524 Bacteria 1217
67 Ga0316588_1000039 3300033528 Bacteria 9802
68 Ga0316588_1000830 3300033528 Bacteria 4657
69 Ga0316596_1018276 3300033541 Bacteria 1771
70 Ga0316574_0003388 3300035398 Bacteria 8206
71 Ga0316574_0019238 3300035398 Bacteria 4026
72 Ga0316574_0027357 3300035398 Bacteria 3435
73 Ga0316574_0041704 3300035398 Bacteria 2830
74 Ga0316574_0074308 3300035398 Bacteria 2151
75 Ga0373937_0157359 3300036401 Bacteria 2130
76 Ga0316582_0001337 3300036647 Bacteria 10703
77 Ga0316582_0065090 3300036647 Bacteria 2346
78 Ga0316584_0001607 3300036712 Bacteria 13747
79 Ga0316584_0002531 3300036712 Bacteria 11595
80 Ga0316584_0079575 3300036712 Bacteria 2455
81 Ga0400483_003371 3300039062 Bacteria 5915
82 Ga0400483_192432 3300039062 Bacteria 2545
83 Ga0400483_286324 3300039062 Bacteria 4617
84 Ga0436363_0778891 3300039450 Bacteria 964
85 Ga0451845_0719412 3300041501 Bacteria 873
86 Ga0451577_0000001 3300042876 Bacteria 2461803
87 Ga0451577_0001230 3300042876 Bacteria 35522
88 Ga0451577_0005404 3300042876 Bacteria 13106
89 Ga0451577_0015632 3300042876 Bacteria 7052
90 Ga0451577_0017286 3300042876 Bacteria 6665
91 Ga0451577_0024597 3300042876 Bacteria 5476
92 Ga0451577_0040465 3300042876 Bacteria 4184
93 Ga0451577_0091262 3300042876 Bacteria 2719
94 Ga0451577_0230805 3300042876 Bacteria 1674
95 Ga0453684_0078678 3300044712 Bacteria 4125
96 Ga0453684_0176320 3300044712 Bacteria 2514
97 Ga0453684_0423803 3300044712 Bacteria 1486
98 Ga0453684_0486371 3300044712 Bacteria 1369
99 Ga0453684_0793801 3300044712 Bacteria 1021
100 Ga0453684_1021585 3300044712 Bacteria 878
101 Ga0451576_0000122 3300045051 Bacteria 197797
102 Ga0451576_0002473 3300045051 Bacteria 27484
103 Ga0451576_0003813 3300045051 Bacteria 20286
104 Ga0451576_0005491 3300045051 Bacteria 15866
105 Ga0451576_0128307 3300045051 Bacteria 2643
106 Ga0451576_0432517 3300045051 Bacteria 1381
107 Ga0495650_0004238 3300046471 Bacteria 9924
108 Ga0495607_0015821 3300046501 Bacteria 4881
109 Ga0495652_0393768 3300046529 Bacteria 982
110 Ga0495675_0318669 3300047444 Bacteria 920
111 Ga0495684_0119882 3300047471 Bacteria 1982
112 Ga0495686_0131908 3300047472 Bacteria 1481
113 Ga0496102_0496517 3300048905 Bacteria 1142
114 Ga0496108_0015196 3300048911 Bacteria 6281
115 Ga0496110_0480024 3300048913 Bacteria 1132
116 Ga0496110_0483399 3300048913 Bacteria 1128
117 Ga0496124_0046162 3300048927 Bacteria 3732
118 Ga0496124_0098472 3300048927 Bacteria 2372
119 Ga0501031_0066787 3300049568 Bacteria 2343
120 Ga0501032_0033446 3300049569 Bacteria 3522
121 Ga0501033_0115563 3300049570 Bacteria 1950
122 Ga0501036_0041070 3300049572 Bacteria 3915
123 Ga0501038_0029098 3300049574 Bacteria 4899
124 Ga0501073_0060428 3300049589 Bacteria 2645
125 Ga0501280_000715 3300049776 Bacteria 7356
126 Ga0501044_0002706 3300049823 Bacteria 20150
127 Ga0501044_0108723 3300049823 Bacteria 2782
128 nmdc:mga0yw44_1858_c1 3300050492 Bacteria 8673
129 nmdc:mga06z11_146171_c1 3300050494 Bacteria 1340
130 Ga0500635_0000034 3300053080 Bacteria 96919
131 Ga0500594_0000434 3300053118 Bacteria 9235
132 Ga0500607_031470 3300053121 Bacteria 2917
133 Ga0500614_041557 3300053123 Bacteria 1171
134 Ga0500652_003099 3300053131 Bacteria 5015
135 Ga0500559_0000109 3300053136 Bacteria 65246
136 Ga0500616_0128399 3300053153 Bacteria 1201
137 Ga0500622_0006031 3300053156 Bacteria 7122
138 Ga0500636_0118165 3300053177 Bacteria 1490
139 Ga0500587_000122 3300053739 Bacteria 7181
140 2643937299 2643221585 Bacteria 5812563
141 2644299559 2643221653 Bacteria 4569637
142 2644301498 2643221654 Bacteria 5273570
143 2644318464 2643221656 Bacteria 5809961
144 2644338214 2643221660 Bacteria 4208257
145 2644657787 2643221719 Bacteria 4568197
146 2738708962 2738541275 Bacteria 4830863
147 2738847387 2738541301 Bacteria 4834102
148 2738863116 2738541304 Bacteria 4833665
149 2739295634 2738543022 Bacteria 4835059
150 2739357312 2738543033 Bacteria 4833336
151 2819244957 2818991272 Bacteria 4622173
152 2837681413 2837678835 Bacteria 5252418
153 2894777056 2894772417 Bacteria 5305674
154 2928102280 2928100450 Bacteria 4837635
155 2928961218 2928959182 Bacteria 4725774
156 2989780669 2989776772 Bacteria 4843317
157 8005250620 8005246636 Bacteria 4933972
158 8045864957 8045864390 Bacteria 5043873
159 Ga0451576_0485873
160 JGI25153J46596_10008156
161 JGI25160J50197_1009226
162 Ga0070668_100060022
163 Ga0070671_100008366
164 Ga0070673_100273287
165 Ga0070672_100123710
166 Ga0068851_10031421
167 Ga0075365_10006562
168 Ga0075367_10134691
169 Ga0105240_10129542
170 Ga0105248_10176750
171 Ga0105238_10502238
172 Ga0105239_10137291
173 Ga0163163_10397060
174 Ga0209758_1000557
175 Ga0209758_1035535
176 Ga0207426_1006272
177 Ga0207669_10057209
178 Ga0207704_10427692
179 Ga0207691_10104352
180 Ga0207711_10508620
181 Ga0207668_10054052
182 Ga0207678_10436634
183 Ga0209968_1001081
184 Ga0209966_1000013
185 Ga0268266_10048794
186 Ga0265319_1001616
187 Ga0265334_10017457
188 Ga0265323_10002057
189 Ga0265336_10005106
190 Ga0265338_10000081
191 Ga0265324_10003064
192 Ga0265328_10023651
193 Ga0265328_10025250
194 Ga0265340_10008351
195 Ga0265340_10010485
196 Ga0265339_10007113
197 Ga0265331_10097054
198 Ga0265327_10005917
199 Ga0265327_10011604
200 Ga0316575_10002773
201 Ga0316579_10004410
202 Ga0316579_10007744
203 Ga0265314_10010213
204 Ga0265314_10014814
205 Ga0265342_10013875
206 Ga0316576_10000980
207 Ga0316576_10001052
208 Ga0316576_10023882
209 Ga0316576_10026221
210 Ga0316576_10060697
211 Ga0316576_10197077
212 Ga0316578_10008276
213 Ga0316578_10191747
214 Ga0316578_10204185
215 Ga0316577_10000523
216 Ga0316577_10005364
217 Ga0316577_10030161
218 Ga0316585_10000478
219 Ga0316585_10001522
220 Ga0316580_10000394
221 Ga0316593_10042814
222 Ga0307510_10006334
223 Ga0307510_10038638
224 Ga0316592_1028126
225 Ga0316588_1000039
226 Ga0316588_1000830
227 Ga0316596_1018276
228 Ga0316574_0003388
229 Ga0316574_0019238
230 Ga0316574_0027357
231 Ga0316574_0041704
232 Ga0316574_0074308
233 Ga0373937_0157359
234 Ga0316582_0001337
235 Ga0316582_0065090
236 Ga0316584_0001607
237 Ga0316584_0002531
238 Ga0316584_0079575
239 Ga0400483_003371
240 Ga0400483_192432
241 Ga0400483_286324
242 Ga0436363_0778891
243 Ga0451845_0719412
244 Ga0451577_0000001
245 Ga0451577_0001230
246 Ga0451577_0005404
247 Ga0451577_0015632
248 Ga0451577_0017286
249 Ga0451577_0024597
250 Ga0451577_0040465
251 Ga0451577_0091262
252 Ga0451577_0230805
253 Ga0453684_0078678
254 Ga0453684_0176320
255 Ga0453684_0423803
256 Ga0453684_0486371
257 Ga0453684_0793801
258 Ga0453684_1021585
259 Ga0451576_0000122
260 Ga0451576_0002473
261 Ga0451576_0003813
262 Ga0451576_0005491
263 Ga0451576_0128307
264 Ga0451576_0432517
265 Ga0495650_0004238
266 Ga0495607_0015821
267 Ga0495652_0393768
268 Ga0495675_0318669
269 Ga0495684_0119882
270 Ga0495686_0131908
271 Ga0496102_0496517
272 Ga0496108_0015196
273 Ga0496110_0480024
274 Ga0496110_0483399
275 Ga0496124_0046162
276 Ga0496124_0098472
277 Ga0501031_0066787
278 Ga0501032_0033446
279 Ga0501033_0115563
280 Ga0501036_0041070
281 Ga0501038_0029098
282 Ga0501073_0060428
283 Ga0501280_000715
284 Ga0501044_0002706
285 Ga0501044_0108723
286 nmdc:mga0yw44_1858_c1
287 nmdc:mga06z11_146171_c1
288 Ga0500635_0000034
289 Ga0500594_0000434
290 Ga0500607_031470
291 Ga0500614_041557
292 Ga0500652_003099
293 Ga0500559_0000109
294 Ga0500616_0128399
295 Ga0500622_0006031
296 Ga0500636_0118165
297 Ga0500587_000122
298 2643937299
299 2644299559
300 2644301498
301 2644318464
302 2644338214
303 2644657787
304 2738708962
305 2738847387
306 2738863116
307 2739295634
308 2739357312
309 2819244957
310 2837681413
311 2894777056
312 2928102280
313 2928961218
314 2989780669
315 8005250620
316 8045864957

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF01040

UbiA

UbiA prenyltransferase family

40

308

0.78

Structural Annotation

Top 5 Hits

ID Description Score Start End
4tq3-assembly1.cif.gz_A structure of a ubia homolog from archaeoglobus fulgidus bound to gpp and mg2+ 0.6678 13 279
7bpu-assembly1.cif.gz_A structural and mechanistic insights into the biosynthesis of digeranylgeranylglyceryl phosphate synthase in membranes 0.6626 12 275
4tq4-assembly3.cif.gz_C structure of a ubia homolog from archaeoglobus fulgidus bound to dmapp and mg2+ 0.6529 15 279
4tq5-assembly1.cif.gz_A structure of a ubia homolog from archaeoglobus fulgidus 0.6357 13 283
7bpu-assembly1.cif.gz_A structural and mechanistic insights into the biosynthesis of digeranylgeranylglyceryl phosphate synthase in membranes 0.6319 12 275
ID Description Score Start End Superfamily
af_Q38833_266_386_1.20.120.1780 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);UbiA prenyltransferase 0.9623 160 276 1.20.120.1780
af_Q38833_266_386_1.20.120.1780 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);UbiA prenyltransferase 0.9241 160 276 1.20.120.1780
af_I1N2Z4_95_254_1.10.357.140 Mainly Alpha;Orthogonal Bundle;Tetracycline Repressor; domain 2;UbiA prenyltransferase 0.741 19 155 1.10.357.140
af_D3ZG27_215_338_1.20.120.550 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);Membrane associated eicosanoid/glutathione metabolism-like domain 0.7394 161 276 1.20.120.550
af_K7LZY0_286_408_1.20.120.1780 Mainly Alpha;Up-down Bundle;Four Helix Bundle (Hemerythrin (Met), subunit A);UbiA prenyltransferase 0.7367 160 280 1.20.120.1780
ID Description Score Start End GO Terms
AF-A0A2D7YL47-F1-model_v4 deleted 0.9752 112 277
AF-A0A7S2UVX9-F1-model_v4 Chlorophyll synthase ChlG 0.9698 122 276 GO:0016020
GO:0016765
AF-A0A354B027-F1-model_v4 Chlorophyll synthase ChlG 0.9587 140 276 GO:0016020
GO:0016765
AF-A0A3C1RN08-F1-model_v4 Chlorophyll synthase ChlG 0.9443 135 282 GO:0016020
GO:0016765
AF-A0A7S2Y7M4-F1-model_v4 Chlorophyll synthase 0.9429 107 276 GO:0016020
GO:0016765

Map