F230287

General Info

Members Datasets Scaffolds Average Seq Length
158 104 316 179

Family's Representative Sequence

Representative Sequence 3300042876|Ga0451577_0751500|Ga0451577_0751500_67_630
Length 187
Sequence LIHSSVARRYARALLSLGLEEGRFEPYGDELEAVLQAMRGSRELNALIANPGYSHPQRQAAVDVAAGVLKLSPVVVNFLRLLVDRERGADLPAVARAYRAMVDQQAGRVRATVTAARPLSDGELERLREAIGKMTGRSIVLESKTDPSLIGGVVTQVGPTMLDGSLRTQLERMREELKAAPLEPLRS

Samples

Sample ID Description Type Environment
1 3300042876 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9GH_GED Metagenome Rhizosphere
2 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
3 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
4 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
5 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
6 3300005445 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-3 metaG Metagenome Rhizosphere
7 3300005467 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG Metagenome Rhizosphere
8 3300005468 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG Metagenome Rhizosphere
9 3300005518 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-3 metaG Metagenome Rhizosphere
10 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
11 3300005536 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-1 metaG Metagenome Rhizosphere
12 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
13 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
14 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
15 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
16 3300006844 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD2 Metagenome Rhizosphere
17 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
18 3300006871 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 Metagenome Rhizosphere
19 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
20 3300007265 Vadose zone soil microbial communities from the Eel River Critical Zone Observatory, Northern California, USA - Rivendell_Oct2014_Saprolite_2_DNA_Rhizosphere_1 Metagenome Rhizosphere
21 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
22 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
23 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
24 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
25 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
26 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
27 3300025910 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
28 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
29 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
30 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
31 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
32 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
33 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
34 3300028558 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-24 metaG Metagenome Rhizosphere
35 3300028573 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-20-23 metaG Metagenome Rhizosphere
36 3300028653 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-12-25 metaG Metagenome Rhizosphere
37 3300028800 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-21-26 metaG Metagenome Rhizosphere
38 3300029957 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-19 metaG Metagenome Rhizosphere
39 3300031235 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-19 metaG Metagenome Rhizosphere
40 3300031238 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-26 metaG Metagenome Rhizosphere
41 3300031241 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-14-20 metaG Metagenome Rhizosphere
42 3300031242 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-27 metaG Metagenome Rhizosphere
43 3300031249 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB2-19 metaG Metagenome Rhizosphere
44 3300031250 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-19-23 metaG Metagenome Rhizosphere
45 3300031344 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-5-22 metaG Metagenome Rhizosphere
46 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
47 3300031595 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-23 metaG Metagenome Rhizosphere
48 3300031711 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-1-26 metaG Metagenome Rhizosphere
49 3300031712 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-CB3-27 metaG Metagenome Rhizosphere
50 3300031727 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S0-2_050615r3r5 Metagenome Rhizosphere
51 3300031728 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J0-2_160517rDrC Metagenome Rhizosphere
52 3300031731 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-1 Metagenome Rhizosphere
53 3300031903 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-1 Metagenome Rhizosphere
54 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
55 3300032002 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-3 Metagenome Rhizosphere
56 3300033529 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J5-7_050615r2r3 (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
57 3300035084 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_1 Metagenome Rhizosphere
58 3300035112 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_16 Metagenome Rhizosphere
59 3300035114 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_NoN_3 Metagenome Rhizosphere
60 3300035118 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_N_2 Metagenome Rhizosphere
61 3300035121 Populus rhizosphere microbial communities from soil in West Virginia, United States - WV94_WV_N_3 Metagenome Rhizosphere
62 3300035691 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_NoN_4 Metagenome Rhizosphere
63 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
64 3300039438 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R1 v2 Metagenome Rhizosphere
65 3300039447 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R2 v2 Metagenome Rhizosphere
66 3300039453 Rhizosphere microbial communities from Vellozia epidendroides in rupestrian grasslands, the National Park of Serra do Cipo, Brazil - RX_R3 v2 Metagenome Rhizosphere
67 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
68 3300044673 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Bulk_9BB_GED Metagenome Rhizosphere
69 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
70 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
71 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
72 3300045976 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA4R Metagenome Rhizosphere
73 3300047317 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL2_57_8 rhizosphere Metagenome Rhizosphere
74 3300047318 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co1_6_4 rhizosphere Metagenome Rhizosphere
75 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
76 3300048907 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_2c N15 Metagenome Rhizoplane
77 3300048917 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6c N15 Metagenome Rhizoplane
78 3300049127 Metatranscriptome of panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J3_A_0_control (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
79 3300049573 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_01 Metagenome Rhizosphere
80 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
81 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
82 3300049581 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L5_TR_GHRAS_02 Metagenome Rhizosphere
83 3300049583 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_01 Metagenome Rhizosphere
84 3300049584 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_02 Metagenome Rhizosphere
85 3300049585 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - WT_T2_FRAS_03 Metagenome Rhizosphere
86 3300049586 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_01 Metagenome Rhizosphere
87 3300049588 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_03 Metagenome Rhizosphere
88 3300049589 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_01 Metagenome Rhizosphere
89 3300049590 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L2_T2_FRAS_02 Metagenome Rhizosphere
90 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
91 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
92 3300049741 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_01 Metagenome Rhizosphere
93 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
94 3300049743 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_03 Metagenome Rhizosphere
95 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
96 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
97 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
98 3300050512 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD3 re-annotation Metagenome Rhizosphere
99 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
100 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere
101 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
102 3300054114 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_03 Metagenome Rhizosphere
103 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere
104 3300061734 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_03 (v2) (version 2) Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 98.73
Metatranscriptomes 1.27
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.27
Nodule 0
Rhizoplane 2.53
Rhizosphere 96.2
Stem 0
Stem Tuber 0
Unclassified 15.19

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 Ga0451577_0751500 3300042876 Bacteria 882
2 Ga0070658_11375827 3300005327 Bacteria 613
3 Ga0070683_100312016 3300005329 Bacteria 1496
4 Ga0070683_100788344 3300005329 Unclassified 911
5 Ga0070680_101165521 3300005336 Unclassified 666
6 Ga0070675_100565874 3300005354 Bacteria 1029
7 Ga0070708_100019977 3300005445 Bacteria 5640
8 Ga0070708_100186868 3300005445 Bacteria 1938
9 Ga0070706_100167644 3300005467 Bacteria 2050
10 Ga0070706_100625054 3300005467 Unclassified 1000
11 Ga0070707_100005101 3300005468 Bacteria 12311
12 Ga0070699_100035056 3300005518 Bacteria 4336
13 Ga0070699_101135028 3300005518 Unclassified 717
14 Ga0070679_100028349 3300005530 Bacteria 5520
15 Ga0070679_100285930 3300005530 Bacteria 1601
16 Ga0070679_101053068 3300005530 Bacteria 758
17 Ga0070697_100035200 3300005536 Bacteria 4038
18 Ga0070697_100052846 3300005536 Bacteria 3302
19 Ga0070697_100536982 3300005536 Unclassified 1025
20 Ga0070693_100468001 3300005547 Bacteria 888
21 Ga0068855_100061821 3300005563 Bacteria 4374
22 Ga0068856_101091534 3300005614 Bacteria 815
23 Ga0068862_100409285 3300005844 Bacteria 1270
24 Ga0075428_100442469 3300006844 Unclassified 1392
25 Ga0075428_101438099 3300006844 Unclassified 723
26 Ga0075433_10144056 3300006852 Bacteria 2118
27 Ga0075434_100009490 3300006871 Bacteria 9076
28 Ga0075435_100143468 3300007076 Unclassified 2005
29 Ga0075435_100461680 3300007076 Bacteria 1096
30 Ga0099794_10262023 3300007265 Bacteria 892
31 Ga0111539_10018742 3300009094 Bacteria 8567
32 Ga0111539_10334917 3300009094 Bacteria 1762
33 Ga0114129_10000203 3300009147 Bacteria 66202
34 Ga0157374_10502766 3300013296 Bacteria 1217
35 Ga0157375_11185374 3300013308 Bacteria 895
36 Ga0157380_11538221 3300014326 Bacteria 719
37 Ga0207426_1010851 3300025302 Bacteria 3509
38 Ga0207684_10181282 3300025910 Bacteria 1816
39 Ga0207684_10533506 3300025910 Unclassified 1005
40 Ga0207660_11042591 3300025917 Unclassified 667
41 Ga0207652_10043704 3300025921 Bacteria 3815
42 Ga0207661_10929171 3300025944 Unclassified 801
43 Ga0207667_10378467 3300025949 Bacteria 1442
44 Ga0207702_10059266 3300026078 Bacteria 3261
45 Ga0268265_10446489 3300028380 Bacteria 1207
46 Ga0265326_10008108 3300028558 Bacteria 3184
47 Ga0265334_10005809 3300028573 Bacteria 5372
48 Ga0265334_10167296 3300028573 Bacteria 771
49 Ga0265323_10001941 3300028653 Bacteria 9758
50 Ga0265323_10006243 3300028653 Bacteria 5015
51 Ga0265323_10018394 3300028653 Bacteria 2704
52 Ga0265323_10056421 3300028653 Bacteria 1378
53 Ga0265323_10084307 3300028653 Bacteria 1070
54 Ga0265338_10076400 3300028800 Bacteria 2837
55 Ga0265338_10156795 3300028800 Bacteria 1762
56 Ga0265324_10000390 3300029957 Bacteria 31843
57 Ga0265324_10022421 3300029957 Bacteria 2257
58 Ga0265330_10000466 3300031235 Bacteria 27094
59 Ga0265330_10015157 3300031235 Bacteria 3569
60 Ga0265330_10151175 3300031235 Bacteria 986
61 Ga0265332_10126833 3300031238 Bacteria 1071
62 Ga0265325_10075187 3300031241 Bacteria 1687
63 Ga0265329_10000165 3300031242 Bacteria 33013
64 Ga0265329_10036924 3300031242 Bacteria 1574
65 Ga0265339_10000006 3300031249 Bacteria 259593
66 Ga0265339_10328210 3300031249 Unclassified 725
67 Ga0265331_10307613 3300031250 Unclassified 710
68 Ga0265316_10000565 3300031344 Bacteria 41380
69 Ga0265316_10000829 3300031344 Bacteria 34213
70 Ga0265316_10007368 3300031344 Bacteria 10368
71 Ga0265316_10015645 3300031344 Bacteria 6622
72 Ga0265316_10109017 3300031344 Bacteria 2098
73 Ga0265316_10130673 3300031344 Bacteria 1891
74 Ga0265316_10267862 3300031344 Bacteria 1251
75 Ga0307408_101290812 3300031548 Bacteria 684
76 Ga0265313_10005731 3300031595 Bacteria 9040
77 Ga0265314_10144465 3300031711 Bacteria 1467
78 Ga0265314_10203585 3300031711 Bacteria 1168
79 Ga0265342_10001627 3300031712 Bacteria 20731
80 Ga0265342_10012083 3300031712 Bacteria 5861
81 Ga0265342_10029872 3300031712 Bacteria 3381
82 Ga0316576_10027752 3300031727 Bacteria 3982
83 Ga0316578_10091812 3300031728 Bacteria 1814
84 Ga0307405_10774584 3300031731 Bacteria 801
85 Ga0307407_10158333 3300031903 Bacteria 1479
86 Ga0307409_100191615 3300031995 Bacteria 1820
87 Ga0307416_100270312 3300032002 Bacteria 1668
88 Ga0316587_1000142 3300033529 Bacteria 5705
89 Ga0373928_0005221 3300035084 Bacteria 2478
90 Ga0373932_0026679 3300035112 Bacteria 1573
91 Ga0373939_0011300 3300035114 Bacteria 2250
92 Ga0373954_0075695 3300035118 Bacteria 1603
93 Ga0373960_0014909 3300035121 Bacteria 1976
94 Ga0373931_0272525 3300035691 Unclassified 1036
95 Ga0373937_1617007 3300036401 Unclassified 595
96 Ga0436360_1155007 3300039438 Unclassified 748
97 Ga0436361_0831671 3300039447 Bacteria 1994
98 Ga0436362_0060764 3300039453 Bacteria 667
99 Ga0451577_0141725 3300042876 Unclassified 2160
100 Ga0466969_0003518 3300044656 Bacteria 8319
101 Ga0453683_0005011 3300044673 Bacteria 9303
102 Ga0453683_0214096 3300044673 Bacteria 1224
103 Ga0466966_0010119 3300044684 Bacteria 6257
104 Ga0453684_0000115 3300044712 Bacteria 355501
105 Ga0453684_0019626 3300044712 Bacteria 10272
106 Ga0453684_0343013 3300044712 Unclassified 1686
107 Ga0453684_0403992 3300044712 Bacteria 1529
108 Ga0453684_0640796 3300044712 Bacteria 1160
109 Ga0466959_0000598 3300045049 Bacteria 21059
110 Ga0466967_1252527 3300045976 Bacteria 739
111 Ga0495604_0925989 3300047317 Unclassified 543
112 Ga0495636_0495760 3300047318 Bacteria 590
113 Ga0496102_1142666 3300048905 Unclassified 698
114 Ga0496104_0053947 3300048907 Bacteria 3799
115 Ga0496104_0791900 3300048907 Bacteria 854
116 Ga0496114_0003239 3300048917 Bacteria 12489
117 Ga0501306_010172 3300049127 Bacteria 1180
118 Ga0501037_0240082 3300049573 Bacteria 1270
119 Ga0501038_0151455 3300049574 Bacteria 1890
120 Ga0501043_0190627 3300049579 Bacteria 1594
121 Ga0501047_0027468 3300049581 Bacteria 5483
122 Ga0501067_0017215 3300049583 Bacteria 3994
123 Ga0501068_0000594 3300049584 Bacteria 18417
124 Ga0501068_0330902 3300049584 Bacteria 977
125 Ga0501069_0002460 3300049585 Bacteria 9448
126 Ga0501069_0015270 3300049585 Bacteria 4115
127 Ga0501070_0000512 3300049586 Bacteria 35492
128 Ga0501070_0119994 3300049586 Bacteria 2173
129 Ga0501072_0000087 3300049588 Bacteria 67661
130 Ga0501073_0009062 3300049589 Bacteria 7347
131 Ga0501073_0039849 3300049589 Bacteria 3327
132 Ga0501074_0001341 3300049590 Bacteria 16335
133 Ga0501074_0975818 3300049590 Bacteria 596
134 Ga0501076_0152429 3300049592 Bacteria 1880
135 Ga0501077_0003984 3300049593 Bacteria 8912
136 Ga0501079_0001369 3300049741 Bacteria 17149
137 Ga0501079_0471445 3300049741 Bacteria 986
138 Ga0501080_0041097 3300049742 Bacteria 4310
139 Ga0501080_0085107 3300049742 Bacteria 2938
140 Ga0501080_0508115 3300049742 Bacteria 1076
141 Ga0501080_0572887 3300049742 Unclassified 1004
142 Ga0501080_0789531 3300049742 Bacteria 833
143 Ga0501081_0070720 3300049743 Bacteria 2432
144 Ga0501044_0007399 3300049823 Bacteria 12077
145 nmdc:mga05p37_25580_c1 3300050507 Bacteria 7181
146 nmdc:mga08y16_205197_c1 3300050511 Bacteria 2042
147 nmdc:mga0n895_149516_c1 3300050512 Bacteria 2365
148 nmdc:mga0n895_19395_c1 3300050512 Bacteria 6320
149 nmdc:mga0rr50_175225_c1 3300050513 Bacteria 1750
150 nmdc:mga0rr50_281970_c1 3300050513 Bacteria 1386
151 nmdc:mga0rr50_995909_c1 3300050513 Unclassified 714
152 nmdc:mga0a205_6896_c1 3300050515 Bacteria 10268
153 Ga0500644_0026687 3300053088 Unclassified 1790
154 Ga0501084_0000410 3300054114 Bacteria 33132
155 Ga0501084_0620440 3300054114 Bacteria 913
156 Ga0501082_0003138 3300060353 Bacteria 14420
157 Ga0501082_0023472 3300060353 Bacteria 5321
158 Ga0530510_0394526 3300061734 Unclassified 1042
159 Ga0451577_0751500
160 Ga0070658_11375827
161 Ga0070683_100312016
162 Ga0070683_100788344
163 Ga0070680_101165521
164 Ga0070675_100565874
165 Ga0070708_100019977
166 Ga0070708_100186868
167 Ga0070706_100167644
168 Ga0070706_100625054
169 Ga0070707_100005101
170 Ga0070699_100035056
171 Ga0070699_101135028
172 Ga0070679_100028349
173 Ga0070679_100285930
174 Ga0070679_101053068
175 Ga0070697_100035200
176 Ga0070697_100052846
177 Ga0070697_100536982
178 Ga0070693_100468001
179 Ga0068855_100061821
180 Ga0068856_101091534
181 Ga0068862_100409285
182 Ga0075428_100442469
183 Ga0075428_101438099
184 Ga0075433_10144056
185 Ga0075434_100009490
186 Ga0075435_100143468
187 Ga0075435_100461680
188 Ga0099794_10262023
189 Ga0111539_10018742
190 Ga0111539_10334917
191 Ga0114129_10000203
192 Ga0157374_10502766
193 Ga0157375_11185374
194 Ga0157380_11538221
195 Ga0207426_1010851
196 Ga0207684_10181282
197 Ga0207684_10533506
198 Ga0207660_11042591
199 Ga0207652_10043704
200 Ga0207661_10929171
201 Ga0207667_10378467
202 Ga0207702_10059266
203 Ga0268265_10446489
204 Ga0265326_10008108
205 Ga0265334_10005809
206 Ga0265334_10167296
207 Ga0265323_10001941
208 Ga0265323_10006243
209 Ga0265323_10018394
210 Ga0265323_10056421
211 Ga0265323_10084307
212 Ga0265338_10076400
213 Ga0265338_10156795
214 Ga0265324_10000390
215 Ga0265324_10022421
216 Ga0265330_10000466
217 Ga0265330_10015157
218 Ga0265330_10151175
219 Ga0265332_10126833
220 Ga0265325_10075187
221 Ga0265329_10000165
222 Ga0265329_10036924
223 Ga0265339_10000006
224 Ga0265339_10328210
225 Ga0265331_10307613
226 Ga0265316_10000565
227 Ga0265316_10000829
228 Ga0265316_10007368
229 Ga0265316_10015645
230 Ga0265316_10109017
231 Ga0265316_10130673
232 Ga0265316_10267862
233 Ga0307408_101290812
234 Ga0265313_10005731
235 Ga0265314_10144465
236 Ga0265314_10203585
237 Ga0265342_10001627
238 Ga0265342_10012083
239 Ga0265342_10029872
240 Ga0316576_10027752
241 Ga0316578_10091812
242 Ga0307405_10774584
243 Ga0307407_10158333
244 Ga0307409_100191615
245 Ga0307416_100270312
246 Ga0316587_1000142
247 Ga0373928_0005221
248 Ga0373932_0026679
249 Ga0373939_0011300
250 Ga0373954_0075695
251 Ga0373960_0014909
252 Ga0373931_0272525
253 Ga0373937_1617007
254 Ga0436360_1155007
255 Ga0436361_0831671
256 Ga0436362_0060764
257 Ga0451577_0141725
258 Ga0466969_0003518
259 Ga0453683_0005011
260 Ga0453683_0214096
261 Ga0466966_0010119
262 Ga0453684_0000115
263 Ga0453684_0019626
264 Ga0453684_0343013
265 Ga0453684_0403992
266 Ga0453684_0640796
267 Ga0466959_0000598
268 Ga0466967_1252527
269 Ga0495604_0925989
270 Ga0495636_0495760
271 Ga0496102_1142666
272 Ga0496104_0053947
273 Ga0496104_0791900
274 Ga0496114_0003239
275 Ga0501306_010172
276 Ga0501037_0240082
277 Ga0501038_0151455
278 Ga0501043_0190627
279 Ga0501047_0027468
280 Ga0501067_0017215
281 Ga0501068_0000594
282 Ga0501068_0330902
283 Ga0501069_0002460
284 Ga0501069_0015270
285 Ga0501070_0000512
286 Ga0501070_0119994
287 Ga0501072_0000087
288 Ga0501073_0009062
289 Ga0501073_0039849
290 Ga0501074_0001341
291 Ga0501074_0975818
292 Ga0501076_0152429
293 Ga0501077_0003984
294 Ga0501079_0001369
295 Ga0501079_0471445
296 Ga0501080_0041097
297 Ga0501080_0085107
298 Ga0501080_0508115
299 Ga0501080_0572887
300 Ga0501080_0789531
301 Ga0501081_0070720
302 Ga0501044_0007399
303 nmdc:mga05p37_25580_c1
304 nmdc:mga08y16_205197_c1
305 nmdc:mga0n895_149516_c1
306 nmdc:mga0n895_19395_c1
307 nmdc:mga0rr50_175225_c1
308 nmdc:mga0rr50_281970_c1
309 nmdc:mga0rr50_995909_c1
310 nmdc:mga0a205_6896_c1
311 Ga0500644_0026687
312 Ga0501084_0000410
313 Ga0501084_0620440
314 Ga0501082_0003138
315 Ga0501082_0023472
316 Ga0530510_0394526

MSA Aligner

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Family Sequences

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00213

OSCP

ATP synthase delta (OSCP) subunit

6

177

0.99

Structural Annotation

Top 5 Hits

ID Description Score Start End
6tmh-assembly1.cif.gz_G cryo-em structure of toxoplasma gondii mitochondrial atp synthase dimer, oscp/f1/c-ring model 0.9421 5 97
6re7-assembly1.cif.gz_P cryo-em structure of polytomella f-atp synthase, rotary substate 2c, focussed refinement of f1 head and rotor 0.9298 5 103
6rea-assembly1.cif.gz_P cryo-em structure of polytomella f-atp synthase, rotary substate 2d, focussed refinement of f1 head and rotor 0.923 5 103
6rde-assembly1.cif.gz_P cryoem structure of polytomella f-atp synthase, primary rotary state 2, focussed refinement of f1 head and rotor 0.9227 5 101
6reu-assembly1.cif.gz_P cryo-em structure of polytomella f-atp synthase, rotary substate 3c, focussed refinement of f1 head and rotor 0.9218 5 103
ID Description Score Start End Superfamily
af_Q8IEL5_76_171_1.10.520.20 Mainly Alpha;Orthogonal Bundle;Peroxidase; domain 1;N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.9576 4 94 1.10.520.20
af_Q84R40_123_196_3.30.2320.30 Alpha Beta;2-Layer Sandwich;hypothetical protein PF0899 fold;ATP synthase, E subunit, C-terminal 0.9511 104 171 3.30.2320.30
af_Q7JNG1_50_145_1.10.520.20 Mainly Alpha;Orthogonal Bundle;Peroxidase; domain 1;N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.9467 4 95 1.10.520.20
af_Q96251_57_149_1.10.520.20 Mainly Alpha;Orthogonal Bundle;Peroxidase; domain 1;N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.9459 6 94 1.10.520.20
af_Q9DB20_36_129_1.10.520.20 Mainly Alpha;Orthogonal Bundle;Peroxidase; domain 1;N-terminal domain of the delta subunit of the F1F0-ATP synthase 0.944 4 94 1.10.520.20
ID Description Score Start End GO Terms
AF-A0A6N8YQB1-F1-model_v4 ATP synthase subunit delta (ATP synthase F(1) sector subunit delta) (F-type ATPase subunit delta) (F-ATPase subunit delta) 0.967 3 175 GO:0005886
GO:0045261
GO:0046933
AF-A0A7T9HRN2-F1-model_v4 deleted 0.9641 1 175
AF-A0A2E5HJL4-F1-model_v4 ATP synthase subunit delta (ATP synthase F(1) sector subunit delta) (F-type ATPase subunit delta) (F-ATPase subunit delta) 0.96 2 175 GO:0005886
GO:0045261
GO:0046933
AF-A0A1J5E9H4-F1-model_v4 ATP synthase subunit delta (ATP synthase F(1) sector subunit delta) (F-type ATPase subunit delta) (F-ATPase subunit delta) 0.9574 4 173 GO:0005886
GO:0045261
GO:0046933
AF-A0A2D7PEP3-F1-model_v4 ATP synthase subunit delta (ATP synthase F(1) sector subunit delta) (F-type ATPase subunit delta) (F-ATPase subunit delta) 0.9557 4 171 GO:0005886
GO:0045261
GO:0046933

Map