F230205

General Info

Members Datasets Scaffolds Average Seq Length
158 94 158 592

Family's Representative Sequence

Representative Sequence 3300039062|Ga0400483_268854|Ga0400483_268854_1204_3177
Length 657
Sequence MASILNIGVSALQAYQRSLTTTGHNIANSETEGYSRQRVEYGTRVPMGSGVGWLGTGVQVEDITRMYDDFLATQTRTSLSSASQLDTYYTHASRVDNLMGDKLTGLDPAIQDFFDALNVVADDPASTTSRQILLSDAQSLVDRFHDLNQQFENERQIMNAQLQSATSEVSSIAESIALLNQKIVEAYGVSGNSDPNDLLDQREVLLNHLAEKIDISVVPQDNGAWNVFVGKGQSLVMGSQSASIGTARSSTDASKLDIVYSTSTNSQVITDQMAGGEIGGLLTFRDEILDQAQNTLGLIAVGISDRLNSQHRLGLDLNGQLGGDMFSTPSIGVSSSSLTAPTVTASFVDVGNLTSSDYVLTAGAAADDFTLTRTSDGQTWSFNTGGGYPYTYPPAGDLDGFSISISGAASAGDEYLIRPTHSAARSLSLEITDPRQIAAASPVRSDPSTNAITSGINLGNASITQPEISDLTNIPLAGPITLEYDSAIPGFTVTGGPGGTIAYDPSTQSGGASFTFAAYGGMTFEIEGIPQDGDTFVLANNTSGVGDNRNALALAELQNENTMLGQTGGTLETATFQAVYGQIISDVGTKTRSAEINADAANGALEANQMALSSVNGVNLDEEAANLVKFQQAYQAAAQVISVSNTIFDSLLGAVRR

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 3300003775 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 Metagenome Endosphere
3 3300003781 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 Metagenome Endosphere
4 3300003791 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 Metagenome Endosphere
5 3300005289 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v2 (version 2) Metagenome Rhizosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
8 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
9 3300005340 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG Metagenome Rhizosphere
10 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
11 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
12 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
13 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
14 3300005458 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C8-3B metaG Metagenome Rhizosphere
15 3300005546 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-3 metaG Metagenome Rhizosphere
16 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
17 3300005578 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 Metagenome Rhizosphere
18 3300005614 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 Metagenome Rhizosphere
19 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
20 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
21 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
22 3300005844 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 Metagenome Rhizosphere
23 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
24 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
25 3300009093 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-4 metaG Metagenome Rhizosphere
26 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
27 3300009101 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-4 metaG Metagenome Rhizosphere
28 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
29 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
30 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
31 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
32 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
33 3300025256 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mMS (SPAdes) (version 2) Metagenome Unclassified
34 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
35 3300025292 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mLB_r2 (SPAdes) (version 2) Metagenome Endosphere
36 3300025294 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mLB (SPAdes) (version 2) Metagenome Endosphere
37 3300025295 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mMF_r2 (SPAdes) (version 3) Metagenome Endosphere
38 3300025298 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
39 3300025299 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Col_mCL_r2 (SPAdes) (version 3) Metagenome Endosphere
40 3300025304 Arabidopsis root microbial communities from North Carolina, USA - plate scrape MF_Cvi_mCL_r2 (SPAdes) (version 2) Metagenome Endosphere
41 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
42 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
43 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
44 3300025924 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
45 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
46 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
47 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
48 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
49 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
50 3300025981 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C4-2 (SPAdes) (version 2) Metagenome Rhizosphere
51 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
52 3300026078 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C6-2 (SPAdes) (version 2) Metagenome Rhizosphere
53 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
54 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
55 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
56 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
57 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
58 3300032168 Metatranscriptome of rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S5-7_160517rA (Metagenome Metatranscriptome) Metatranscriptome Rhizosphere
59 3300033180 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 12_EM Metagenome Unclassified
60 3300036647 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - J_170502JArCrA Metagenome Rhizosphere
61 3300036712 Rhizosphere microbial communities from salt marsh grasses in Alabama, United States - S_170502SBrCrA Metagenome Rhizosphere
62 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
63 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
64 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
65 3300038725 Seagrass microbial communities from Seahorse Key, FL, USA - HV0818 Metagenome Unclassified
66 3300038726 Seagrass microbial communities from Seahorse Key, FL, USA - TH0319 Metagenome Unclassified
67 3300038727 Seagrass microbial communities from Seahorse Key, FL, USA - TV0818 Metagenome Unclassified
68 3300038735 Seagrass microbial communities from Seahorse Key, FL, USA - SH0319 Metagenome Unclassified
69 3300038741 Seagrass microbial communities from Seahorse Key, FL, USA - SV0818 Metagenome Unclassified
70 3300038742 Seagrass microbial communities from Seahorse Key, FL, USA - SH0818 Metagenome Unclassified
71 3300039062 Seagrass microbial communities from Seahorse Key, FL, USA - HH0818 Metagenome Unclassified
72 3300039093 Seagrass microbial communities from Seahorse Key, FL, USA - TH0818 Metagenome Unclassified
73 3300039110 Seagrass microbial communities from Seahorse Key, FL, USA - SV0319 Metagenome Unclassified
74 3300041413 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - SB0710WE14Z080117_6839 Metagenome Rhizosphere
75 3300042007 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0612DE14Z070717_5290 Metagenome Rhizosphere
76 3300042010 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0503WE14Z080117_5431 Metagenome Rhizosphere
77 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
78 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
79 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
80 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
81 3300046557 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-388-CL1_25_34 rhizosphere Metagenome Rhizosphere
82 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
83 3300048905 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_1c N15 Metagenome Rhizoplane
84 3300048918 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - KLW rhizoplane_6d N15 Metagenome Rhizoplane
85 3300048921 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_1f N15 Metagenome Unclassified
86 3300048924 Root microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR root_3e N15 Metagenome Unclassified
87 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
88 3300049742 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L4_T2_FRAS_02 Metagenome Rhizosphere
89 3300049776 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - H24_A_5_drought Metagenome Rhizosphere
90 3300049822 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_02 Metagenome Rhizosphere
91 3300049823 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_02 Metagenome Rhizosphere
92 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
93 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
94 3300060353 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L5_T2_FRAS_01 Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.37
Metatranscriptomes 0.63
Isolates 0

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.76
Nodule 0
Rhizoplane 1.9
Rhizosphere 53.8
Stem 0
Stem Tuber 0
Unclassified 33.54

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_2840378 2162886007 Bacteria 7294
2 Ga0055524_1015499 3300003775 Bacteria 2775
3 Ga0055536_1017782 3300003781 Bacteria 2310
4 Ga0055536_1020846 3300003781 Bacteria 2009
5 Ga0055530_10002077 3300003791 Bacteria 13428
6 Ga0065704_10070579 3300005289 Bacteria 19940
7 Ga0070658_10033539 3300005327 Bacteria 4131
8 Ga0070666_10000013 3300005335 Bacteria 230442
9 Ga0070666_10047216 3300005335 Bacteria 2890
10 Ga0068868_100011487 3300005338 Bacteria 6450
11 Ga0070689_100024910 3300005340 Bacteria 4491
12 Ga0070661_100040110 3300005344 Bacteria 3414
13 Ga0070668_100016439 3300005347 Bacteria 5531
14 Ga0070668_100046902 3300005347 Bacteria 3320
15 Ga0070671_100000186 3300005355 Bacteria 41665
16 Ga0070667_100000057 3300005367 Bacteria 150501
17 Ga0070667_100008638 3300005367 Bacteria 8443
18 Ga0070681_10054003 3300005458 Bacteria 4003
19 Ga0070696_100013700 3300005546 Bacteria 5445
20 Ga0070665_100000026 3300005548 Bacteria 365176
21 Ga0070665_100053059 3300005548 Bacteria 4066
22 Ga0068854_100002390 3300005578 Bacteria 11589
23 Ga0068856_100002720 3300005614 Bacteria 18121
24 Ga0068859_100006211 3300005617 Bacteria 12132
25 Ga0068859_100059406 3300005617 Bacteria 3852
26 Ga0068864_100041377 3300005618 Bacteria 3941
27 Ga0068860_100089490 3300005843 Bacteria 2931
28 Ga0068862_100000103 3300005844 Bacteria 101651
29 Ga0068862_100086750 3300005844 Bacteria 2722
30 Ga0097621_100041227 3300006237 Bacteria 3715
31 Ga0097620_100006211 3300006931 Bacteria 12132
32 Ga0097620_100059406 3300006931 Bacteria 3852
33 Ga0105240_10042397 3300009093 Bacteria 5799
34 Ga0105245_10127744 3300009098 Unclassified 2381
35 Ga0105247_10013747 3300009101 Bacteria 4854
36 Ga0105238_10000098 3300009551 Bacteria 98005
37 Ga0105239_10022741 3300010375 Bacteria 6912
38 Ga0163162_10000919 3300013306 Bacteria 27373
39 Ga0163163_10038638 3300014325 Bacteria 4653
40 Ga0163163_10086998 3300014325 Bacteria 3135
41 Ga0157379_10094439 3300014968 Bacteria 2683
42 Ga0157379_10120814 3300014968 Bacteria 2356
43 Ga0209759_1003133 3300025256 Bacteria 6759
44 Ga0209130_1005798 3300025284 Bacteria 4179
45 Ga0209676_1001870 3300025292 Bacteria 17283
46 Ga0209676_1008247 3300025292 Bacteria 4686
47 Ga0209025_1003622 3300025294 Bacteria 14382
48 Ga0209564_1012884 3300025295 Bacteria 3603
49 Ga0209050_1002007 3300025298 Bacteria 19010
50 Ga0209256_1008588 3300025299 Bacteria 4697
51 Ga0209256_1008760 3300025299 Bacteria 4606
52 Ga0209257_1005182 3300025304 Bacteria 9381
53 Ga0209257_1006074 3300025304 Bacteria 8031
54 Ga0209257_1006804 3300025304 Bacteria 7190
55 Ga0207680_10000001 3300025903 Bacteria 1091453
56 Ga0207705_10053468 3300025909 Bacteria 2909
57 Ga0207649_10058505 3300025920 Bacteria 2414
58 Ga0207694_10000345 3300025924 Bacteria 43822
59 Ga0207644_10000116 3300025931 Bacteria 58949
60 Ga0207690_10063756 3300025932 Bacteria 2514
61 Ga0207670_10016016 3300025936 Bacteria 4496
62 Ga0207667_10000648 3300025949 Bacteria 45080
63 Ga0207668_10047111 3300025972 Bacteria 2950
64 Ga0207640_10001381 3300025981 Bacteria 13137
65 Ga0207640_10061145 3300025981 Bacteria 2494
66 Ga0207658_10000551 3300025986 Bacteria 33984
67 Ga0207658_10013103 3300025986 Bacteria 5663
68 Ga0207702_10003108 3300026078 Bacteria 15388
69 Ga0207702_10065562 3300026078 Bacteria 3111
70 Ga0207683_10124002 3300026121 Bacteria 2321
71 Ga0268266_10000001 3300028379 Bacteria 4040580
72 Ga0268266_10000059 3300028379 Bacteria 269485
73 Ga0268265_10000612 3300028380 Bacteria 35633
74 Ga0268265_10025278 3300028380 Bacteria 4213
75 Ga0268264_10046536 3300028381 Bacteria 3603
76 Ga0307406_10065405 3300031901 Bacteria 2363
77 Ga0316593_10000187 3300032168 Bacteria 9434
78 Ga0307510_10000070 3300033180 Bacteria 77054
79 Ga0307510_10139714 3300033180 Bacteria 2069
80 Ga0316582_0012006 3300036647 Bacteria 4820
81 Ga0316584_0121551 3300036712 Unclassified 1951
82 Ga0395900_0049464 3300037418 Bacteria 4331
83 Ga0395898_0060430 3300037466 Bacteria 3683
84 Ga0395898_0074912 3300037466 Bacteria 3269
85 Ga0395901_0052465 3300038443 Bacteria 4238
86 Ga0400484_02015 3300038725 Bacteria 8316
87 Ga0400484_38403 3300038725 Bacteria 20838
88 Ga0400484_40788 3300038725 Bacteria 10167
89 Ga0400490_00046 3300038726 Bacteria 6102
90 Ga0400490_22896 3300038726 Bacteria 19307
91 Ga0400490_41264 3300038726 Bacteria 84677
92 Ga0400490_43033 3300038726 Bacteria 24360
93 Ga0400490_45648 3300038726 Bacteria 8111
94 Ga0400490_45747 3300038726 Bacteria 3769
95 Ga0400490_47752 3300038726 Bacteria 3276
96 Ga0400490_55495 3300038726 Bacteria 35408
97 Ga0400490_56871 3300038726 Bacteria 10915
98 Ga0400491_20009 3300038727 Bacteria 3763
99 Ga0400485_02375 3300038735 Bacteria 13888
100 Ga0400485_18896 3300038735 Bacteria 72885
101 Ga0400488_05274 3300038741 Bacteria 6782
102 Ga0400488_16678 3300038741 Bacteria 3297
103 Ga0400488_43978 3300038741 Bacteria 16431
104 Ga0400488_45185 3300038741 Bacteria 6519
105 Ga0400488_45686 3300038741 Bacteria 5206
106 Ga0400488_52380 3300038741 Bacteria 7168
107 Ga0400486_13872 3300038742 Bacteria 13522
108 Ga0400486_19627 3300038742 Bacteria 369894
109 Ga0400486_26899 3300038742 Bacteria 13479
110 Ga0400486_30861 3300038742 Bacteria 9484
111 Ga0400483_007194 3300039062 Bacteria 2602
112 Ga0400483_013606 3300039062 Bacteria 5118
113 Ga0400483_043006 3300039062 Bacteria 6639
114 Ga0400483_099091 3300039062 Bacteria 19727
115 Ga0400483_112161 3300039062 Bacteria 6392
116 Ga0400483_121867 3300039062 Bacteria 19038
117 Ga0400483_124456 3300039062 Bacteria 2757
118 Ga0400483_139224 3300039062 Bacteria 7987
119 Ga0400483_157294 3300039062 Bacteria 17208
120 Ga0400483_171302 3300039062 Bacteria 2421
121 Ga0400483_185310 3300039062 Bacteria 7138
122 Ga0400483_192491 3300039062 Bacteria 12196
123 Ga0400483_195523 3300039062 Bacteria 14201
124 Ga0400483_258177 3300039062 Bacteria 2275
125 Ga0400483_268854 3300039062 Unclassified 3292
126 Ga0400483_274558 3300039062 Bacteria 11793
127 Ga0400489_20465 3300039093 Bacteria 19132
128 Ga0400487_18381 3300039110 Bacteria 6775
129 Ga0400487_20531 3300039110 Bacteria 10180
130 Ga0400487_31408 3300039110 Bacteria 34683
131 Ga0400487_32957 3300039110 Bacteria 61224
132 Ga0400487_66235 3300039110 Bacteria 58022
133 Ga0439465_0003640 3300041413 Bacteria 5024
134 Ga0439449_0019661 3300042007 Bacteria 2531
135 Ga0439452_004304 3300042010 Bacteria 4804
136 Ga0466959_0049757 3300045049 Bacteria 3078
137 Ga0495638_0000874 3300046460 Bacteria 31216
138 Ga0495638_0008090 3300046460 Bacteria 7479
139 Ga0495650_0000206 3300046471 Bacteria 127713
140 Ga0495650_0000369 3300046471 Bacteria 78529
141 Ga0495606_0001757 3300046507 Bacteria 27795
142 Ga0495606_0020164 3300046507 Bacteria 4928
143 Ga0495622_0007905 3300046557 Bacteria 4933
144 Ga0495649_0001586 3300046694 Bacteria 17018
145 Ga0496102_0063320 3300048905 Bacteria 3386
146 Ga0496115_0003376 3300048918 Bacteria 11455
147 Ga0496115_0020597 3300048918 Bacteria 5087
148 Ga0496118_0001369 3300048921 Bacteria 36742
149 Ga0496118_0009719 3300048921 Bacteria 9656
150 Ga0496121_0015780 3300048924 Bacteria 7868
151 Ga0501043_0002141 3300049579 Bacteria 16860
152 Ga0501080_0058101 3300049742 Bacteria 3601
153 Ga0501280_000378 3300049776 Bacteria 10860
154 Ga0501035_0023666 3300049822 Bacteria 5636
155 Ga0501044_0011390 3300049823 Bacteria 9632
156 Ga0500651_0000304 3300053093 Bacteria 28479
157 Ga0500568_0001290 3300053139 Bacteria 16451
158 Ga0501082_0000996 3300060353 Bacteria 24996

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300053139 Ga0500568_0001290 Ga0500568_0001290_7216_9087 457
2 3300039062 Ga0400483_043006 Ga0400483_043006_1226_3190 467
3 3300033180 Ga0307510_10000070 Ga0307510_1000007066 470
4 3300005548 Ga0070665_100053059 Ga0070665_1000530592 471
5 3300005347 Ga0070668_100046902 Ga0070668_1000469022 472
6 3300038735 Ga0400485_18896 Ga0400485_18896_70126_71931 481
7 3300038741 Ga0400488_05274 Ga0400488_05274_4654_6459 481
8 3300038742 Ga0400486_19627 Ga0400486_19627_79889_81694 481
9 3300039110 Ga0400487_31408 Ga0400487_31408_10317_12122 481
10 3300009093 Ga0105240_10042397 Ga0105240_100423975 484
11 3300033180 Ga0307510_10139714 Ga0307510_101397141 484
12 3300038726 Ga0400490_47752 Ga0400490_47752_206_1978 484
13 3300046471 Ga0495650_0000369 Ga0495650_0000369_71541_73415 484
14 3300060353 Ga0501082_0000996 Ga0501082_0000996_21212_23071 484
15 3300031901 Ga0307406_10065405 Ga0307406_100654052 485
16 3300005548 Ga0070665_100000026 Ga0070665_1000000268 486
17 3300028379 Ga0268266_10000001 Ga0268266_100000011261 486
18 3300048921 Ga0496118_0001369 Ga0496118_0001369_4544_6415 487
19 3300009098 Ga0105245_10127744 Ga0105245_101277442 491
20 3300048905 Ga0496102_0063320 Ga0496102_0063320_1084_2976 491
21 3300048921 Ga0496118_0009719 Ga0496118_0009719_462_2354 491
22 3300005546 Ga0070696_100013700 Ga0070696_1000137002 496
23 3300005578 Ga0068854_100002390 Ga0068854_1000023903 496
24 3300025949 Ga0207667_10000648 Ga0207667_1000064834 496
25 3300025981 Ga0207640_10001381 Ga0207640_100013815 496
26 3300039062 Ga0400483_185310 Ga0400483_185310_3345_5153 496
27 3300006237 Ga0097621_100041227 Ga0097621_1000412272 499
28 3300005335 Ga0070666_10000013 Ga0070666_1000001343 500
29 3300005367 Ga0070667_100008638 Ga0070667_1000086384 500
30 3300005458 Ga0070681_10054003 Ga0070681_100540033 500
31 3300009551 Ga0105238_10000098 Ga0105238_1000009892 500
32 3300013306 Ga0163162_10000919 Ga0163162_1000091912 500
33 3300025903 Ga0207680_10000001 Ga0207680_10000001128 500
34 3300025924 Ga0207694_10000345 Ga0207694_100003459 500
35 3300025986 Ga0207658_10013103 Ga0207658_100131032 500
36 3300048924 Ga0496121_0015780 Ga0496121_0015780_5483_7357 500
37 3300049742 Ga0501080_0058101 Ga0501080_0058101_1212_3083 500
38 3300014968 Ga0157379_10120814 Ga0157379_101208142 501
39 3300028379 Ga0268266_10000059 Ga0268266_10000059135 501
40 3300003775 Ga0055524_1015499 Ga0055524_10154992 502
41 3300003781 Ga0055536_1020846 Ga0055536_10208461 502
42 3300003791 Ga0055530_10002077 Ga0055530_100020774 502
43 3300005338 Ga0068868_100011487 Ga0068868_1000114874 502
44 3300005618 Ga0068864_100041377 Ga0068864_1000413773 502
45 3300025284 Ga0209130_1005798 Ga0209130_10057982 502
46 3300025292 Ga0209676_1008247 Ga0209676_10082473 502
47 3300025295 Ga0209564_1012884 Ga0209564_10128842 502
48 3300025298 Ga0209050_1002007 Ga0209050_10020073 502
49 3300025299 Ga0209256_1008588 Ga0209256_10085883 502
50 3300025299 Ga0209256_1008760 Ga0209256_10087603 502
51 3300025304 Ga0209257_1005182 Ga0209257_10051823 502
52 3300025304 Ga0209257_1006074 Ga0209257_10060747 502
53 3300025304 Ga0209257_1006804 Ga0209257_10068043 502
54 3300025981 Ga0207640_10061145 Ga0207640_100611452 502
55 3300026078 Ga0207702_10065562 Ga0207702_100655622 502
56 3300026121 Ga0207683_10124002 Ga0207683_101240022 502
57 3300003781 Ga0055536_1017782 Ga0055536_10177822 503
58 3300025292 Ga0209676_1001870 Ga0209676_100187017 503
59 3300046507 Ga0495606_0020164 Ga0495606_0020164_2584_4458 503
60 3300049579 Ga0501043_0002141 Ga0501043_0002141_11051_12931 503
61 3300046460 Ga0495638_0008090 Ga0495638_0008090_1942_3816 504
62 3300046471 Ga0495650_0000206 Ga0495650_0000206_41823_43697 504
63 3300005327 Ga0070658_10033539 Ga0070658_100335392 509
64 3300025909 Ga0207705_10053468 Ga0207705_100534682 509
65 3300005335 Ga0070666_10047216 Ga0070666_100472162 511
66 3300005367 Ga0070667_100000057 Ga0070667_100000057132 511
67 3300005617 Ga0068859_100059406 Ga0068859_1000594063 511
68 3300006931 Ga0097620_100059406 Ga0097620_1000594063 511
69 3300009101 Ga0105247_10013747 Ga0105247_100137474 511
70 3300014968 Ga0157379_10094439 Ga0157379_100944392 511
71 3300025986 Ga0207658_10000551 Ga0207658_1000055120 511
72 3300038741 Ga0400488_16678 Ga0400488_16678_1324_3270 511
73 3300005617 Ga0068859_100006211 Ga0068859_1000062113 512
74 3300006931 Ga0097620_100006211 Ga0097620_10000621111 512
75 3300025932 Ga0207690_10063756 Ga0207690_100637562 513
76 3300039062 Ga0400483_139224 Ga0400483_139224_1865_3811 513
77 3300038741 Ga0400488_45686 Ga0400488_45686_3120_5066 515
78 3300039062 Ga0400483_195523 Ga0400483_195523_568_2514 516
79 3300005347 Ga0070668_100016439 Ga0070668_1000164393 517
80 3300005844 Ga0068862_100000103 Ga0068862_1000001038 517
81 3300025972 Ga0207668_10047111 Ga0207668_100471112 517
82 3300028380 Ga0268265_10000612 Ga0268265_1000061227 517
83 3300038726 Ga0400490_41264 Ga0400490_41264_7742_9652 517
84 3300045049 Ga0466959_0049757 Ga0466959_0049757_650_2521 517
85 3300010375 Ga0105239_10022741 Ga0105239_100227413 518
86 3300037418 Ga0395900_0049464 Ga0395900_0049464_1535_3433 520
87 3300037466 Ga0395898_0074912 Ga0395898_0074912_1314_3212 520
88 3300025294 Ga0209025_1003622 Ga0209025_100362215 522
89 3300037466 Ga0395898_0060430 Ga0395898_0060430_513_2387 522
90 3300038443 Ga0395901_0052465 Ga0395901_0052465_1902_3776 522
91 3300049822 Ga0501035_0023666 Ga0501035_0023666_2466_4358 522
92 3300049823 Ga0501044_0011390 Ga0501044_0011390_5538_7430 522
93 3300005614 Ga0068856_100002720 Ga0068856_10000272017 525
94 3300026078 Ga0207702_10003108 Ga0207702_1000310813 525
95 3300038725 Ga0400484_02015 Ga0400484_02015_1151_3097 525
96 3300038725 Ga0400484_40788 Ga0400484_40788_6641_8557 533
97 3300038735 Ga0400485_02375 Ga0400485_02375_274_2202 533
98 3300038742 Ga0400486_26899 Ga0400486_26899_4928_6856 533
99 3300039062 Ga0400483_121867 Ga0400483_121867_11556_13484 533
100 3300039062 Ga0400483_192491 Ga0400483_192491_4584_6512 533
101 3300005340 Ga0070689_100024910 Ga0070689_1000249102 534
102 3300005344 Ga0070661_100040110 Ga0070661_1000401102 534
103 3300005843 Ga0068860_100089490 Ga0068860_1000894902 534
104 3300005844 Ga0068862_100086750 Ga0068862_1000867502 534
105 3300025256 Ga0209759_1003133 Ga0209759_10031333 534
106 3300025936 Ga0207670_10016016 Ga0207670_100160163 534
107 3300028380 Ga0268265_10025278 Ga0268265_100252782 534
108 3300028381 Ga0268264_10046536 Ga0268264_100465362 534
109 3300048918 Ga0496115_0020597 Ga0496115_0020597_1494_3368 534
110 3300041413 Ga0439465_0003640 Ga0439465_0003640_1733_3613 537
111 3300042007 Ga0439449_0019661 Ga0439449_0019661_514_2394 537
112 3300042010 Ga0439452_004304 Ga0439452_004304_2787_4667 537
113 3300005355 Ga0070671_100000186 Ga0070671_1000001864 538
114 3300025931 Ga0207644_10000116 Ga0207644_1000011637 538
115 3300053093 Ga0500651_0000304 Ga0500651_0000304_2313_4190 539
116 3300014325 Ga0163163_10086998 Ga0163163_100869982 543
117 3300038726 Ga0400490_43033 Ga0400490_43033_6912_8873 543
118 3300038726 Ga0400490_45648 Ga0400490_45648_4723_6669 543
119 3300038726 Ga0400490_45747 Ga0400490_45747_920_2866 543
120 3300038726 Ga0400490_55495 Ga0400490_55495_32102_34063 543
121 3300038727 Ga0400491_20009 Ga0400491_20009_1351_3312 543
122 3300038741 Ga0400488_43978 Ga0400488_43978_9843_11789 543
123 3300038742 Ga0400486_13872 Ga0400486_13872_3282_5246 543
124 3300039062 Ga0400483_112161 Ga0400483_112161_18_1979 543
125 3300039062 Ga0400483_124456 Ga0400483_124456_155_2116 543
126 3300039062 Ga0400483_258177 Ga0400483_258177_54_2015 543
127 3300039110 Ga0400487_18381 Ga0400487_18381_3512_5458 543
128 3300039110 Ga0400487_32957 Ga0400487_32957_58488_60449 543
129 3300039110 Ga0400487_66235 Ga0400487_66235_47122_49068 543
130 3300049776 Ga0501280_000378 Ga0501280_000378_7489_9432 543
131 3300039062 Ga0400483_007194 Ga0400483_007194_509_2476 545
132 3300039062 Ga0400483_171302 Ga0400483_171302_285_2252 545
133 3300046460 Ga0495638_0000874 Ga0495638_0000874_3624_5498 545
134 3300046507 Ga0495606_0001757 Ga0495606_0001757_13944_15818 545
135 3300046557 Ga0495622_0007905 Ga0495622_0007905_2265_4139 545
136 3300046694 Ga0495649_0001586 Ga0495649_0001586_3506_5380 545
137 3300048918 Ga0496115_0003376 Ga0496115_0003376_7862_9736 545
138 3300032168 Ga0316593_10000187 Ga0316593_100001872 547
139 3300036647 Ga0316582_0012006 Ga0316582_0012006_162_2060 547
140 3300036712 Ga0316584_0121551 Ga0316584_0121551_22_1920 547
141 3300038725 Ga0400484_38403 Ga0400484_38403_2957_4960 552
142 3300038726 Ga0400490_00046 Ga0400490_00046_330_2300 552
143 3300038726 Ga0400490_22896 Ga0400490_22896_15012_17015 552
144 3300038726 Ga0400490_56871 Ga0400490_56871_8802_10811 552
145 3300038741 Ga0400488_45185 Ga0400488_45185_3617_5587 552
146 3300038741 Ga0400488_52380 Ga0400488_52380_4826_6835 552
147 3300038742 Ga0400486_30861 Ga0400486_30861_7191_9161 552
148 3300039062 Ga0400483_013606 Ga0400483_013606_1596_3569 552
149 3300039062 Ga0400483_099091 Ga0400483_099091_6570_8543 552
150 3300039062 Ga0400483_157294 Ga0400483_157294_12102_14075 552
151 3300039062 Ga0400483_268854 Ga0400483_268854_1204_3177 552
152 3300039062 Ga0400483_274558 Ga0400483_274558_873_2846 552
153 3300039093 Ga0400489_20465 Ga0400489_20465_8797_10767 552
154 3300039110 Ga0400487_20531 Ga0400487_20531_26_2035 552
155 3300014325 Ga0163163_10038638 Ga0163163_100386383 553
156 3300025920 Ga0207649_10058505 Ga0207649_100585052 553
157 2162886007 SwRhRL2b_contig_2840378 SwRhRL2b_0434.00001750 554
158 3300005289 Ga0065704_10070579 Ga0065704_1007057911 554

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00460

Flg_bb_rod

Flagella basal body rod protein

5

34

0.98

PF22638

FlgK_D1

Flagellar hook-associated protein FlgK helical domain

92

326

0.98

PF06429

Flg_bbr_C

Flagellar basal body rod FlgEFG protein C-terminal

609

654

0.93

Structural Annotation

Top 5 Hits

ID Description Score Start End
2d4y-assembly1.cif.gz_A crystal structure of a 49k fragment of hap1 (flgk) 0.8294 71 510
2d4y-assembly2.cif.gz_B crystal structure of a 49k fragment of hap1 (flgk) 0.8021 71 509
7cg0-assembly1.cif.gz_h cryo-em structure of the flagellar proximal rod with flif peptides from salmonella 0.765 3 68
7bin-assembly1.cif.gz_W salmonella export gate and rod refined in focussed c1 map 0.7429 1 69
4ut1-assembly1.cif.gz_A the structure of the flagellar hook junction protein flgk from burkholderia pseudomallei 0.6664 3 509
ID Description Score Start End Superfamily
3k8vB01 Mainly Alpha;Up-down Bundle;f41 fragment of flagellin, N-terminal domain;f41 fragment of flagellin, N-terminal domain 0.5592 477 554 1.20.1330.10
af_A0A2R8QB14_1579_1688_3.30.160.780 Alpha Beta;2-Layer Sandwich;Double Stranded RNA Binding Domain; 0.5092 169 216 3.30.160.780
2qa4I01 Alpha Beta;2-Layer Sandwich;Ribosomal protein L11, N-terminal domain;Ribosomal protein L11/L12, N-terminal domain 0.4672 117 159 3.30.1550.10
2qa4I01 Alpha Beta;2-Layer Sandwich;Ribosomal protein L11, N-terminal domain;Ribosomal protein L11/L12, N-terminal domain 0.3851 117 159 3.30.1550.10
af_A4HXF7_7_363_3.40.850.10 Alpha Beta;3-Layer(aba) Sandwich;Kinesin;Kinesin motor domain 0.3736 274 330 3.40.850.10
ID Description Score Start End GO Terms
AF-A0A3C1KLJ0-F1-model_v4 Flagellar hook-associated protein 1 0.9286 124 496 GO:0005198
GO:0005576
GO:0009424
GO:0044780
AF-A0A6L7CKV4-F1-model_v4 Flagellar hook-associated protein 1 (HAP1) 0.9127 205 495 GO:0005198
GO:0005576
GO:0009424
GO:0044780
AF-A0A3C1KLJ0-F1-model_v4 Flagellar hook-associated protein 1 0.9052 124 496 GO:0005198
GO:0005576
GO:0009424
GO:0044780
AF-A0A6L7CKV4-F1-model_v4 Flagellar hook-associated protein 1 (HAP1) 0.9002 205 495 GO:0005198
GO:0005576
GO:0009424
GO:0044780
AF-A0A2W4NTW1-F1-model_v4 Flagellar hook-associated protein 1 (HAP1) 0.8947 196 554 GO:0005198
GO:0005576
GO:0009424
GO:0044780

Feature Viewer

pLDDT pTM Quality
76.88 0.63 Medium
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Predicted Structure (AlphaFold2)

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