F229896

General Info

Members Datasets Scaffolds Average Seq Length
158 110 157 446

Family's Representative Sequence

Representative Sequence 3300026041|Ga0207639_10004327|Ga0207639_100043274
Length 490
Sequence MGSRFALSGFQLLIINCSLLIIIASCSVEKQIARSAKANVLDTKALQTAHVGISIFDPGTNKYLYNYQGDKYFVPASNTKIPTCYAAMKYLGDSLVGLKYGFSEAKDSAEMILVILPTGDPTFMHEDFIKQPIWDFLSTKAKGYKEQAAILDTIWQEKHLGSGWSWTDYDASYMPERNTMPIYGNVIDIRLNSVSERKIKDTGDFQASTTTLFKTQNHYFDKLVNANTYLLSRDAILDKQPMVEIRRTIGQNTFWIDEGRKKFVNTSIPFVTGDMNGPWGNSHLTTSEIISEKFNFRFGSIYPRGNDTLFTFNCPDCRSRVIKIKNWYKIHSQPTDSLLKPMMHRSDNFFAEQSLLMVSNERLGVMNDEKIIDTLLKTDFKDLPQKPRWVDGSGLSRYNLFTPQDFVAILNKMKNEFGMERIKVIFATGGEGTISSYYKADSGYIYGKTGTLSGVVALLIFSTLVNNHQASATEVRRAVEKFLQGIRNTY

Samples

Sample ID Description Type Environment
1 2818991444 Filimonas endophytica 3197 Isolate Unclassified
2 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
3 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
4 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
5 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
6 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
7 3300005328 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG Metagenome Rhizosphere
8 3300005330 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3H metaG Metagenome Rhizosphere
9 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
10 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
11 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
12 3300005336 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG Metagenome Rhizosphere
13 3300005337 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3L metaG Metagenome Rhizosphere
14 3300005338 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 Metagenome Rhizosphere
15 3300005343 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG Metagenome Rhizosphere
16 3300005347 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG Metagenome Rhizosphere
17 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
18 3300005355 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG Metagenome Rhizosphere
19 3300005364 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG Metagenome Rhizosphere
20 3300005438 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-2 metaG Metagenome Rhizosphere
21 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
22 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
23 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
24 3300005466 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3L metaG Metagenome Rhizosphere
25 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
26 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
27 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
28 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
29 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
30 3300005564 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG Metagenome Rhizosphere
31 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
32 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
33 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
34 3300005718 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M2-2 Metagenome Rhizosphere
35 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
36 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
37 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
38 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
39 3300006358 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 Metagenome Rhizosphere
40 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
41 3300006847 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 Metagenome Rhizosphere
42 3300006880 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 Metagenome Rhizosphere
43 3300006881 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M1-2 Metagenome Rhizosphere
44 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
45 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
46 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
47 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
48 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
49 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
50 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
51 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
52 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
53 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
54 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
55 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
56 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
57 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
58 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
59 3300014745 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M5-5 metaG Metagenome Rhizosphere
60 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
61 3300017792 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S4-5 metaG Metagenome Rhizosphere
62 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
63 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025972 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300026023 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes) (version 2) Metagenome Rhizosphere
86 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026116 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C7-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026142 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 (SPAdes) (version 2) Metagenome Rhizosphere
93 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
94 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300031251 Rhizosphere microbial communities from Carex aquatilis grown in University of Washington, Seatle, WA, United States - 4-16-21 metaG Metagenome Rhizosphere
96 3300031456 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 15_EM Metagenome Unclassified
97 3300031852 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-3 Metagenome Rhizosphere
98 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
99 3300044712 Rhizosphere soil microbial communities from rice plants in Newark, Delaware, United States - Rhiz_9IH_GED Metagenome Rhizosphere
100 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
101 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
102 3300047472 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - SKWD-24-1-Co2_54_22 rhizosphere Metagenome Rhizosphere
103 3300049568 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_01 Metagenome Rhizosphere
104 3300049569 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - WT_TR_GHRAS_02 Metagenome Rhizosphere
105 3300049571 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L1_TR_GHRAS_01 Metagenome Rhizosphere
106 3300049579 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_01 Metagenome Rhizosphere
107 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
108 3300050509 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 re-annotation Metagenome Rhizosphere
109 3300050511 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 re-annotation Metagenome Rhizosphere
110 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 99.37
Metatranscriptomes 0
Isolates 0.63

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 2.53
Nodule 0
Rhizoplane 0
Rhizosphere 93.67
Stem 0
Stem Tuber 0
Unclassified 3.8

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 rootL2_10061800 3300003322 Bacteria 8020
2 rootH1_10135474 3300003323 Bacteria 1506
3 rootH1_10144604 3300003323 Unclassified 3937
4 rootH1_10164791 3300003323 Bacteria 2648
5 JGI25160J50197_1010307 3300003354 Bacteria 3390
6 Ga0065712_10000434 3300005290 Bacteria 11955
7 Ga0070658_10080577 3300005327 Bacteria 2674
8 Ga0070676_10123469 3300005328 Bacteria 1628
9 Ga0070690_100009903 3300005330 Bacteria 5529
10 Ga0070670_100023966 3300005331 Bacteria 5250
11 Ga0070670_100049547 3300005331 Bacteria 3611
12 Ga0070670_100147153 3300005331 Bacteria 2038
13 Ga0070677_10018762 3300005333 Unclassified 2496
14 Ga0068869_100100703 3300005334 Bacteria 2185
15 Ga0068869_100230681 3300005334 Bacteria 1471
16 Ga0070680_100078871 3300005336 Bacteria 2713
17 Ga0070682_100063994 3300005337 Bacteria 2334
18 Ga0068868_100035914 3300005338 Bacteria 3833
19 Ga0070687_100065124 3300005343 Bacteria 1938
20 Ga0070668_100084908 3300005347 Bacteria 2487
21 Ga0070675_100048676 3300005354 Bacteria 3476
22 Ga0070675_100122112 3300005354 Bacteria 2213
23 Ga0070671_100020125 3300005355 Bacteria 5438
24 Ga0070673_100049368 3300005364 Bacteria 3285
25 Ga0070673_100121378 3300005364 Bacteria 2180
26 Ga0070673_100176673 3300005364 Bacteria 1825
27 Ga0070701_10029999 3300005438 Bacteria 2687
28 Ga0070700_100084531 3300005441 Bacteria 2057
29 Ga0070678_100034218 3300005456 Bacteria 3537
30 Ga0068867_100115357 3300005459 Bacteria 2069
31 Ga0070685_10001538 3300005466 Bacteria 12167
32 Ga0070698_100001254 3300005471 Bacteria 28366
33 Ga0070679_100024317 3300005530 Bacteria 5936
34 Ga0068853_100082535 3300005539 Bacteria 2815
35 Ga0068853_100119427 3300005539 Bacteria 2350
36 Ga0070672_100041604 3300005543 Bacteria 3534
37 Ga0070665_100086692 3300005548 Bacteria 3136
38 Ga0070664_100094401 3300005564 Bacteria 2594
39 Ga0068852_100010021 3300005616 Bacteria 7051
40 Ga0068859_100005534 3300005617 Bacteria 12865
41 Ga0068859_100110067 3300005617 Bacteria 2816
42 Ga0068859_100116210 3300005617 Unclassified 2740
43 Ga0068864_100054938 3300005618 Unclassified 3437
44 Ga0068866_10065738 3300005718 Bacteria 1898
45 Ga0068870_10014527 3300005840 Bacteria 3721
46 Ga0068870_10030143 3300005840 Bacteria 2740
47 Ga0068870_10038003 3300005840 Bacteria 2484
48 Ga0068863_100005104 3300005841 Bacteria 12952
49 Ga0068863_100016212 3300005841 Bacteria 7149
50 Ga0068863_100026858 3300005841 Bacteria 5491
51 Ga0068863_100227197 3300005841 Unclassified 1799
52 Ga0068860_100132515 3300005843 Bacteria 2393
53 Ga0068860_100249082 3300005843 Bacteria 1729
54 Ga0075366_10039429 3300006195 Bacteria 2793
55 Ga0068871_100081206 3300006358 Bacteria 2686
56 Ga0075430_100015148 3300006846 Bacteria 6564
57 Ga0075431_100113904 3300006847 Unclassified 2791
58 Ga0075429_100041932 3300006880 Bacteria 3984
59 Ga0068865_100035313 3300006881 Bacteria 3360
60 Ga0097620_100005534 3300006931 Bacteria 12865
61 Ga0097620_100110069 3300006931 Bacteria 2816
62 Ga0097620_100116211 3300006931 Unclassified 2740
63 Ga0111539_10273953 3300009094 Bacteria 1964
64 Ga0114129_10091782 3300009147 Bacteria 4207
65 Ga0105242_10002533 3300009176 Bacteria 14345
66 Ga0105242_10030627 3300009176 Bacteria 4297
67 Ga0105242_10068915 3300009176 Bacteria 2928
68 Ga0105242_10073689 3300009176 Bacteria 2840
69 Ga0105237_10015293 3300009545 Bacteria 7993
70 Ga0105249_10031101 3300009553 Bacteria 4826
71 Ga0105249_10135006 3300009553 Bacteria 2360
72 Ga0157371_10171113 3300013102 Bacteria 1552
73 Ga0157370_10017464 3300013104 Bacteria 7239
74 Ga0157374_10162777 3300013296 Bacteria 2173
75 Ga0157378_10005036 3300013297 Bacteria 11601
76 Ga0157378_10066901 3300013297 Bacteria 3219
77 Ga0157378_10108665 3300013297 Bacteria 2540
78 Ga0163162_10147451 3300013306 Bacteria 2470
79 Ga0157372_10024818 3300013307 Bacteria 6515
80 Ga0157372_10059916 3300013307 Bacteria 4259
81 Ga0157372_10084279 3300013307 Bacteria 3602
82 Ga0157375_10022049 3300013308 Bacteria 5857
83 Ga0163163_10205777 3300014325 Bacteria 2016
84 Ga0157380_10010298 3300014326 Bacteria 6722
85 Ga0157380_10067048 3300014326 Bacteria 2889
86 Ga0157377_10018573 3300014745 Bacteria 3616
87 Ga0157376_10023997 3300014969 Bacteria 4783
88 Ga0163161_10079080 3300017792 Unclassified 2417
89 Ga0207426_1000023 3300025302 Bacteria 545465
90 Ga0207682_10014630 3300025893 Bacteria 3058
91 Ga0207682_10053578 3300025893 Bacteria 1673
92 Ga0207680_10063274 3300025903 Bacteria 2264
93 Ga0207647_10000064 3300025904 Bacteria 82970
94 Ga0207645_10073648 3300025907 Bacteria 2186
95 Ga0207643_10017293 3300025908 Bacteria 3942
96 Ga0207643_10028936 3300025908 Bacteria 3080
97 Ga0207705_10088096 3300025909 Bacteria 2270
98 Ga0207660_10060583 3300025917 Bacteria 2722
99 Ga0207662_10016115 3300025918 Bacteria 4213
100 Ga0207657_10017030 3300025919 Bacteria 6990
101 Ga0207652_10012618 3300025921 Bacteria 6830
102 Ga0207681_10030531 3300025923 Bacteria 3514
103 Ga0207644_10129455 3300025931 Bacteria 1930
104 Ga0207690_10005005 3300025932 Bacteria 7828
105 Ga0207706_10081454 3300025933 Bacteria 2844
106 Ga0207686_10000464 3300025934 Bacteria 26868
107 Ga0207686_10038753 3300025934 Bacteria 2886
108 Ga0207686_10055428 3300025934 Bacteria 2487
109 Ga0207691_10004686 3300025940 Bacteria 13245
110 Ga0207691_10078105 3300025940 Bacteria 2980
111 Ga0207691_10192155 3300025940 Bacteria 1780
112 Ga0207689_10002915 3300025942 Bacteria 15788
113 Ga0207689_10068117 3300025942 Bacteria 2925
114 Ga0207661_10098521 3300025944 Bacteria 2450
115 Ga0207679_10094675 3300025945 Bacteria 2320
116 Ga0207651_10040438 3300025960 Bacteria 3085
117 Ga0207712_10000590 3300025961 Bacteria 29093
118 Ga0207712_10001092 3300025961 Bacteria 18944
119 Ga0207712_10181880 3300025961 Bacteria 1652
120 Ga0207668_10059618 3300025972 Bacteria 2675
121 Ga0207677_10076540 3300026023 Bacteria 2383
122 Ga0207677_10111886 3300026023 Bacteria 2035
123 Ga0207639_10004327 3300026041 Bacteria 9571
124 Ga0207641_10000345 3300026088 Bacteria 55589
125 Ga0207641_10012313 3300026088 Bacteria 7017
126 Ga0207676_10010776 3300026095 Bacteria 6520
127 Ga0207676_10036053 3300026095 Bacteria 3760
128 Ga0207674_10134558 3300026116 Bacteria 2434
129 Ga0207675_100032056 3300026118 Bacteria 4894
130 Ga0207675_100141847 3300026118 Bacteria 2283
131 Ga0207675_100253987 3300026118 Bacteria 1702
132 Ga0207683_10056708 3300026121 Bacteria 3437
133 Ga0207683_10076942 3300026121 Bacteria 2955
134 Ga0207683_10248869 3300026121 Unclassified 1622
135 Ga0207698_10001613 3300026142 Bacteria 13129
136 Ga0207698_10202802 3300026142 Unclassified 1777
137 Ga0268265_10049294 3300028380 Bacteria 3166
138 Ga0268264_10017761 3300028381 Bacteria 5823
139 Ga0268264_10296693 3300028381 Bacteria 1520
140 Ga0265327_10000404 3300031251 Bacteria 80704
141 Ga0265327_10082523 3300031251 Bacteria 1584
142 Ga0307513_10202083 3300031456 Bacteria 1827
143 Ga0307410_10141931 3300031852 Bacteria 1778
144 Ga0395905_0018470 3300037471 Bacteria 6618
145 Ga0395905_0025068 3300037471 Bacteria 5625
146 Ga0453684_0028805 3300044712 Bacteria 7908
147 Ga0451576_0370847 3300045051 Bacteria 1500
148 Ga0495650_0022592 3300046471 Bacteria 3014
149 Ga0495686_0002945 3300047472 Bacteria 15232
150 Ga0501031_0002148 3300049568 Bacteria 12437
151 Ga0501032_0077813 3300049569 Unclassified 2208
152 Ga0501034_0014195 3300049571 Bacteria 8210
153 Ga0501043_0012496 3300049579 Bacteria 6644
154 nmdc:mga09592_36345_c1 3300050508 Bacteria 4125
155 nmdc:mga0qj67_61327_c1 3300050509 Bacteria 2986
156 nmdc:mga08y16_92949_c1 3300050511 Bacteria 3143
157 Ga0500611_000016 3300053727 Bacteria 118185

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300049571 Ga0501034_0014195 Ga0501034_0014195_159_1418 384
2 3300025921 Ga0207652_10012618 Ga0207652_100126183 391
3 3300009545 Ga0105237_10015293 Ga0105237_100152934 397
4 3300053727 Ga0500611_000016 Ga0500611_000016_114029_115345 397
5 3300003323 rootH1_10144604 rootH1_101446042 400
6 3300049569 Ga0501032_0077813 Ga0501032_0077813_122_1375 400
7 3300049579 Ga0501043_0012496 Ga0501043_0012496_818_2071 400
8 3300003323 rootH1_10135474 rootH1_101354741 405
9 3300005617 Ga0068859_100110067 Ga0068859_1001100672 405
10 3300006931 Ga0097620_100110069 Ga0097620_1001100692 405
11 3300046471 Ga0495650_0022592 Ga0495650_0022592_923_2269 406
12 3300028381 Ga0268264_10017761 Ga0268264_100177612 407
13 3300026095 Ga0207676_10036053 Ga0207676_100360532 409
14 3300005539 Ga0068853_100082535 Ga0068853_1000825352 410
15 3300005841 Ga0068863_100026858 Ga0068863_1000268582 413
16 3300037471 Ga0395905_0018470 Ga0395905_0018470_88_1389 413
17 3300045051 Ga0451576_0370847 Ga0451576_0370847_45_1328 413
18 3300013102 Ga0157371_10171113 Ga0157371_101711132 415
19 3300006847 Ga0075431_100113904 Ga0075431_1001139042 416
20 3300005336 Ga0070680_100078871 Ga0070680_1000788712 418
21 3300005337 Ga0070682_100063994 Ga0070682_1000639942 418
22 3300005530 Ga0070679_100024317 Ga0070679_1000243175 418
23 3300009176 Ga0105242_10030627 Ga0105242_100306272 418
24 3300013307 Ga0157372_10059916 Ga0157372_100599161 418
25 3300013307 Ga0157372_10084279 Ga0157372_100842791 418
26 3300025917 Ga0207660_10060583 Ga0207660_100605831 418
27 3300025919 Ga0207657_10017030 Ga0207657_100170302 418
28 3300025934 Ga0207686_10038753 Ga0207686_100387532 418
29 3300031251 Ga0265327_10000404 Ga0265327_1000040438 418
30 3300005616 Ga0068852_100010021 Ga0068852_1000100212 419
31 3300025904 Ga0207647_10000064 Ga0207647_1000006475 419
32 3300025932 Ga0207690_10005005 Ga0207690_100050053 419
33 3300026142 Ga0207698_10001613 Ga0207698_100016138 419
34 3300031852 Ga0307410_10141931 Ga0307410_101419312 419
35 3300005327 Ga0070658_10080577 Ga0070658_100805772 420
36 3300025961 Ga0207712_10000590 Ga0207712_1000059015 420
37 3300005330 Ga0070690_100009903 Ga0070690_1000099032 421
38 3300005334 Ga0068869_100230681 Ga0068869_1002306811 421
39 3300005343 Ga0070687_100065124 Ga0070687_1000651242 421
40 3300005354 Ga0070675_100048676 Ga0070675_1000486762 421
41 3300005355 Ga0070671_100020125 Ga0070671_1000201253 421
42 3300005364 Ga0070673_100049368 Ga0070673_1000493682 421
43 3300005438 Ga0070701_10029999 Ga0070701_100299992 421
44 3300005459 Ga0068867_100115357 Ga0068867_1001153571 421
45 3300005840 Ga0068870_10030143 Ga0068870_100301432 421
46 3300006880 Ga0075429_100041932 Ga0075429_1000419323 421
47 3300013297 Ga0157378_10005036 Ga0157378_100050365 421
48 3300013307 Ga0157372_10024818 Ga0157372_100248186 421
49 3300014745 Ga0157377_10018573 Ga0157377_100185732 421
50 3300025918 Ga0207662_10016115 Ga0207662_100161152 421
51 3300026142 Ga0207698_10202802 Ga0207698_102028021 421
52 3300050508 nmdc:mga09592_36345_c1 nmdc:mga09592_36345_c1_1122_2468 421
53 3300005333 Ga0070677_10018762 Ga0070677_100187622 422
54 3300005338 Ga0068868_100035914 Ga0068868_1000359142 422
55 3300005564 Ga0070664_100094401 Ga0070664_1000944012 422
56 3300009094 Ga0111539_10273953 Ga0111539_102739531 422
57 3300013296 Ga0157374_10162777 Ga0157374_101627772 422
58 3300025909 Ga0207705_10088096 Ga0207705_100880962 422
59 3300025944 Ga0207661_10098521 Ga0207661_100985212 422
60 3300025945 Ga0207679_10094675 Ga0207679_100946751 422
61 3300025960 Ga0207651_10040438 Ga0207651_100404382 422
62 3300026023 Ga0207677_10076540 Ga0207677_100765402 422
63 3300026116 Ga0207674_10134558 Ga0207674_101345582 422
64 3300026121 Ga0207683_10248869 Ga0207683_102488691 422
65 3300031251 Ga0265327_10082523 Ga0265327_100825231 422
66 3300050511 nmdc:mga08y16_92949_c1 nmdc:mga08y16_92949_c1_1707_3056 422
67 3300005328 Ga0070676_10123469 Ga0070676_101234691 423
68 3300005331 Ga0070670_100023966 Ga0070670_1000239664 423
69 3300005364 Ga0070673_100121378 Ga0070673_1001213782 423
70 3300005456 Ga0070678_100034218 Ga0070678_1000342182 423
71 3300005539 Ga0068853_100119427 Ga0068853_1001194272 423
72 3300005548 Ga0070665_100086692 Ga0070665_1000866922 423
73 3300005617 Ga0068859_100005534 Ga0068859_1000055342 423
74 3300005618 Ga0068864_100054938 Ga0068864_1000549383 423
75 3300005840 Ga0068870_10014527 Ga0068870_100145274 423
76 3300005843 Ga0068860_100249082 Ga0068860_1002490822 423
77 3300006881 Ga0068865_100035313 Ga0068865_1000353132 423
78 3300006931 Ga0097620_100005534 Ga0097620_1000055347 423
79 3300009176 Ga0105242_10073689 Ga0105242_100736892 423
80 3300013104 Ga0157370_10017464 Ga0157370_100174643 423
81 3300013297 Ga0157378_10066901 Ga0157378_100669011 423
82 3300013306 Ga0163162_10147451 Ga0163162_101474512 423
83 3300025893 Ga0207682_10014630 Ga0207682_100146302 423
84 3300025903 Ga0207680_10063274 Ga0207680_100632742 423
85 3300025907 Ga0207645_10073648 Ga0207645_100736482 423
86 3300025908 Ga0207643_10017293 Ga0207643_100172932 423
87 3300025923 Ga0207681_10030531 Ga0207681_100305311 423
88 3300025933 Ga0207706_10081454 Ga0207706_100814542 423
89 3300025934 Ga0207686_10055428 Ga0207686_100554282 423
90 3300025940 Ga0207691_10078105 Ga0207691_100781052 423
91 3300025942 Ga0207689_10068117 Ga0207689_100681172 423
92 3300026023 Ga0207677_10111886 Ga0207677_101118862 423
93 3300026095 Ga0207676_10010776 Ga0207676_100107763 423
94 3300026118 Ga0207675_100253987 Ga0207675_1002539872 423
95 3300026121 Ga0207683_10056708 Ga0207683_100567082 423
96 3300028380 Ga0268265_10049294 Ga0268265_100492942 423
97 3300005331 Ga0070670_100147153 Ga0070670_1001471532 424
98 3300005347 Ga0070668_100084908 Ga0070668_1000849082 424
99 3300005441 Ga0070700_100084531 Ga0070700_1000845312 424
100 3300005718 Ga0068866_10065738 Ga0068866_100657382 424
101 3300009176 Ga0105242_10068915 Ga0105242_100689152 424
102 3300025942 Ga0207689_10002915 Ga0207689_1000291514 424
103 3300025972 Ga0207668_10059618 Ga0207668_100596182 424
104 3300026118 Ga0207675_100032056 Ga0207675_1000320562 424
105 3300049568 Ga0501031_0002148 Ga0501031_0002148_9118_10443 424
106 iso_pu_bacteria 2818991444 2819585510 424
107 3300003323 rootH1_10164791 rootH1_101647913 425
108 3300005354 Ga0070675_100122112 Ga0070675_1001221122 425
109 3300005543 Ga0070672_100041604 Ga0070672_1000416043 425
110 3300005841 Ga0068863_100016212 Ga0068863_1000162123 425
111 3300006358 Ga0068871_100081206 Ga0068871_1000812062 425
112 3300009176 Ga0105242_10002533 Ga0105242_100025339 425
113 3300013297 Ga0157378_10108665 Ga0157378_101086652 425
114 3300014325 Ga0163163_10205777 Ga0163163_102057771 425
115 3300014326 Ga0157380_10010298 Ga0157380_100102983 425
116 3300014969 Ga0157376_10023997 Ga0157376_100239972 425
117 3300025893 Ga0207682_10053578 Ga0207682_100535781 425
118 3300025934 Ga0207686_10000464 Ga0207686_1000046410 425
119 3300025940 Ga0207691_10004686 Ga0207691_1000468613 425
120 3300025961 Ga0207712_10181880 Ga0207712_101818801 425
121 3300026041 Ga0207639_10004327 Ga0207639_100043274 425
122 3300026088 Ga0207641_10012313 Ga0207641_100123133 425
123 3300026121 Ga0207683_10076942 Ga0207683_100769422 425
124 3300031456 Ga0307513_10202083 Ga0307513_102020832 425
125 3300044712 Ga0453684_0028805 Ga0453684_0028805_1514_2845 425
126 3300005290 Ga0065712_10000434 Ga0065712_100004345 426
127 3300005331 Ga0070670_100049547 Ga0070670_1000495473 426
128 3300005334 Ga0068869_100100703 Ga0068869_1001007032 426
129 3300005466 Ga0070685_10001538 Ga0070685_100015385 426
130 3300005617 Ga0068859_100116210 Ga0068859_1001162102 426
131 3300005840 Ga0068870_10038003 Ga0068870_100380031 426
132 3300005841 Ga0068863_100227197 Ga0068863_1002271972 426
133 3300005843 Ga0068860_100132515 Ga0068860_1001325152 426
134 3300006195 Ga0075366_10039429 Ga0075366_100394292 426
135 3300006931 Ga0097620_100116211 Ga0097620_1001162112 426
136 3300009553 Ga0105249_10031101 Ga0105249_100311013 426
137 3300009553 Ga0105249_10135006 Ga0105249_101350062 426
138 3300013308 Ga0157375_10022049 Ga0157375_100220492 426
139 3300014326 Ga0157380_10067048 Ga0157380_100670482 426
140 3300017792 Ga0163161_10079080 Ga0163161_100790802 426
141 3300025908 Ga0207643_10028936 Ga0207643_100289363 426
142 3300025940 Ga0207691_10192155 Ga0207691_101921552 426
143 3300025961 Ga0207712_10001092 Ga0207712_1000109210 426
144 3300026118 Ga0207675_100141847 Ga0207675_1001418471 426
145 3300028381 Ga0268264_10296693 Ga0268264_102966931 426
146 3300047472 Ga0495686_0002945 Ga0495686_0002945_4628_6058 426
147 3300005471 Ga0070698_100001254 Ga0070698_1000012544 427
148 3300006846 Ga0075430_100015148 Ga0075430_1000151482 428
149 3300009147 Ga0114129_10091782 Ga0114129_100917822 428
150 3300037471 Ga0395905_0025068 Ga0395905_0025068_1282_2700 428
151 3300050509 nmdc:mga0qj67_61327_c1 nmdc:mga0qj67_61327_c1_1322_2713 428
152 3300003354 JGI25160J50197_1010307 JGI25160J50197_10103072 429
153 3300005841 Ga0068863_100005104 Ga0068863_1000051048 429
154 3300025302 Ga0207426_1000023 Ga0207426_1000023264 429
155 3300026088 Ga0207641_10000345 Ga0207641_100003453 429
156 3300025931 Ga0207644_10129455 Ga0207644_101294552 430
157 3300005364 Ga0070673_100176673 Ga0070673_1001766731 431
158 3300003322 rootL2_10061800 rootL2_100618003 440

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02113

Peptidase_S13

D-Ala-D-Ala carboxypeptidase 3 (S13) family

322

484

0.85

PF02113

Peptidase_S13

D-Ala-D-Ala carboxypeptidase 3 (S13) family

33

245

0.8

Structural Annotation

Top 5 Hits

ID Description Score Start End
1w5d-assembly1.cif.gz_A crystal structure of pbp4a from bacillus subtilis 0.7766 33 437
7fds-assembly1.cif.gz_A high resolution crystal structure of lpqh from mycobacterium tuberculosis 0.7743 382 423
1w8y-assembly4.cif.gz_D crystal structure of the nitrocefin acyl-dd-peptidase from actinomadura r39. 0.7552 34 437
2ex9-assembly1.cif.gz_A crystal structure of penicillin binding protein 4 (dacb) from escherichia coli, complexed with penicillin-v 0.7333 50 440
1w5d-assembly1.cif.gz_A crystal structure of pbp4a from bacillus subtilis 0.7195 33 437
ID Description Score Start End Superfamily
2j9pB01 Alpha Beta;3-Layer(aba) Sandwich;Beta-lactamase;DD-peptidase/beta-lactamase superfamily 0.8577 273 437 3.40.710.10
3a3fB01 Alpha Beta;3-Layer(aba) Sandwich;Beta-lactamase;DD-peptidase/beta-lactamase superfamily 0.8378 273 438 3.40.710.10
2exaA01 Alpha Beta;3-Layer(aba) Sandwich;Beta-lactamase;DD-peptidase/beta-lactamase superfamily 0.8195 273 440 3.40.710.10
1w79A01 Alpha Beta;3-Layer(aba) Sandwich;Beta-lactamase;DD-peptidase/beta-lactamase superfamily 0.8085 270 437 3.40.710.10
af_Q86I79_322_517_3.40.710.10 Alpha Beta;3-Layer(aba) Sandwich;Beta-lactamase;DD-peptidase/beta-lactamase superfamily 0.7901 258 438 3.40.710.10
ID Description Score Start End GO Terms
AF-A0A523NC47-F1-model_v4 Peptidase M15 0.9413 382 438 GO:0000270
GO:0004185
GO:0006508
AF-A0A519T5W8-F1-model_v4 deleted 0.9295 327 440
AF-A0A3B9RCY9-F1-model_v4 D-alanyl-D-alanine carboxypeptidase 0.9265 294 440 GO:0000270
GO:0004185
GO:0006508
AF-A0A258LI71-F1-model_v4 D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase 0.9264 275 440 GO:0000270
GO:0004185
GO:0006508
AF-A0A3D0SMC9-F1-model_v4 deleted 0.9234 346 437

Feature Viewer

pLDDT pTM Quality
78.83 0.8 High
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Predicted Structure (AlphaFold2)

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