F229294

General Info

Members Datasets Scaffolds Average Seq Length
158 122 148 716

Family's Representative Sequence

Representative Sequence 3300005841|Ga0068863_100014144|Ga0068863_1000141442
Length 751
Sequence MRFILLKAVSLLCHIHFHAVVAVFNQQLLHTSLFFMKKHFVNILTLICSFTAVAQTGKPIIIEAKTVALVLMVDNNQNVHQSYLGKKLNTAEYGQLRGGQEVYLTAGTENQFEPSIRMIHADGNPSLELKYVSHQTTVDGNVSQTTILLKDPVYPVEITLHYSSYFNEDVIRTWTEIKHKEAKPVLLTHYNSSLLHFTADEYWLTQFHGDWAREMNMVEEKLTNGIKAIESKLGTRANFYQSQAFFLSLNKPSTETTGELIAGLLDWTGNFKYSFEVDQRNGLRFHAGINPYASEYNLPSGENFTTPAFTFTYSANGKGQASRNLHRWARKYGVLDGEAPRMVLLNNWEATHTNFTETGLVELFDEAKKLGADLFLLDDGWFGNKFPRNDDKAGLGDWQEDKKKLPSGIGFLVKEAEKKGIKFGIWLEPEMVNPKSELYEKHPDWILKLPNRPESYGRNQLVLDLINPKVQDFVFSIVDDMLTKYPGLAFIKWDCNRSMTNAYSPYLKEKQTHLYIEYTKSLYKIMDRIRAKYPHFPIMLCSGGGGRIDYGAMKYFTEFWPSDNTDGLERIFIQWGYSYFFPANTISAHVTSMGKQSLKFRTDVAMMGKLGYDIRVNSFTAQELQFSQEAVQTYKRINDIIWFGDLYRLISPYEENRAVLMYVNENKSKAILFNYTTNIRRKDIFSRVLLRGLDPGKKYRFKEINLFPETRSFQPDNDKLLTGEYLMNIGINLSAGRVSSLTSNVYELSAE

Samples

Sample ID Description Type Environment
1 2162886007 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL2 v1 Metagenome Rhizosphere
2 2599185184 Mucilaginibacter sp. NFR10 Isolate Rhizoplane
3 2738541278 Niastella sp. CF465 Isolate Unclassified
4 2818991460 Chitinophaga polysaccharea 1209 Isolate Unclassified
5 2919186247 Pedobacter africanus 2697 Isolate Rhizosphere
6 2919437846 Mucilaginibacter pocheonensis 3262 Isolate Rhizosphere
7 2928078545 Mucilaginibacter rubeus 1215 Isolate Unclassified
8 2928147474 Mucilaginibacter rubeus 2025 Isolate Unclassified
9 2929177148 Chitinophaga sp. R-72269 Hybrid assembly Isolate Unclassified
10 2939664404 Pedobacter africanus 2990 Isolate Rhizosphere
11 2946013367 Chitinophaga sp. W3I9 Isolate Rhizosphere
12 3300000043 Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 young rhizosphere Metagenome Rhizosphere
13 3300001989 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5 Metagenome Rhizosphere
14 3300003320 Sugarcane root Sample H2 Metagenome Unclassified
15 3300003323 Sugarcane root Sample H1 Metagenome Unclassified
16 3300003354 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS Metagenome Endosphere
17 3300005327 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG Metagenome Rhizosphere
18 3300005329 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG Metagenome Rhizosphere
19 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
20 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
21 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
22 3300005344 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG Metagenome Rhizosphere
23 3300005366 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG Metagenome Rhizosphere
24 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
25 3300005455 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG Metagenome Rhizosphere
26 3300005471 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-50-2 metaG Metagenome Rhizosphere
27 3300005530 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG Metagenome Rhizosphere
28 3300005563 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 Metagenome Rhizosphere
29 3300005616 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C2-2 Metagenome Rhizosphere
30 3300005617 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 Metagenome Rhizosphere
31 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
32 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
33 3300005842 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 Metagenome Rhizosphere
34 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
35 3300006195 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 Metagenome Endosphere
36 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
37 3300006931 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S2-2 (version 2) (version 2) Metagenome Rhizosphere
38 3300009147 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 (version 2) (version 2) Metagenome Rhizosphere
39 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
40 3300009545 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG Metagenome Rhizosphere
41 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
42 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
43 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
44 3300013102 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C4-5 metaG Metagenome Rhizosphere
45 3300013104 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C3-5 metaG Metagenome Rhizosphere
46 3300013296 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M2-5 metaG Metagenome Rhizosphere
47 3300013297 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M6-5 metaG Metagenome Rhizosphere
48 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
49 3300013307 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C5-5 metaG Metagenome Rhizosphere
50 3300014325 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S6-5 metaG Metagenome Rhizosphere
51 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
52 3300014969 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M4-5 metaG Metagenome Rhizosphere
53 3300025208 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mTSA (SPAdes) (version 2) Metagenome Endosphere
54 3300025242 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mTSA_r2 (SPAdes) (version 2) Metagenome Endosphere
55 3300025246 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mTSA (SPAdes) (version 2) Metagenome Unclassified
56 3300025250 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape CL_Col_mCL (SPAdes) (version 2) Metagenome Unclassified
57 3300025254 Arabidopsis root microbial communities from North Carolina, USA - plate scrape CL_Col_mMF_r2 (SPAdes) (version 2) Metagenome Endosphere
58 3300025284 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mLB (SPAdes) (version 2) Metagenome Endosphere
59 3300025302 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Cvi_mMS (SPAdes) (version 2) Metagenome Endosphere
60 3300025321 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C1-2 (SPAdes) (version 2) Metagenome Rhizosphere
61 3300025903 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
62 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
63 3300025909 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
64 3300025914 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
65 3300025917 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
66 3300025919 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
67 3300025920 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
68 3300025921 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes) (version 2) Metagenome Rhizosphere
69 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025932 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025942 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025944 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025949 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C5-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025961 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025986 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300026035 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes) (version 2) Metagenome Rhizosphere
77 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
78 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
79 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
80 3300028380 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S5-2 (SPAdes) (version 2) Metagenome Rhizosphere
81 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
82 3300028794 Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 17_EM Metagenome Unclassified
83 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
84 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
85 3300032004 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-3 Metagenome Rhizosphere
86 3300035695 Populus rhizosphere microbial communities from soil in Oregon, United States - GW9791_Oregon_NoN_19 Metagenome Rhizosphere
87 3300037312 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_B SG_2 Metagenome Rhizosphere
88 3300037418 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_C SG_3 Metagenome Rhizosphere
89 3300037466 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_A SG_1 Metagenome Rhizosphere
90 3300037471 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Control_C SG_11 Metagenome Rhizosphere
91 3300038443 Enriched cells from switchgrass rhizosphere in EcoFAB chamber, Walnut Creek, California, United States - Plant-Nitrogen_D SG_4 Metagenome Rhizosphere
92 3300042014 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0216WE14Z070717_5275 Metagenome Rhizosphere
93 3300044656 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COA1R Metagenome Rhizosphere
94 3300044658 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC1R Metagenome Rhizosphere
95 3300044684 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC4R Metagenome Rhizosphere
96 3300044842 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - CSA2R Metagenome Rhizosphere
97 3300045049 Rhizosphere microbial communities from millet plant in semiarid region near Thies, Senegal - COC3R Metagenome Rhizosphere
98 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
99 3300046471 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co3_9_34 rhizosphere Metagenome Rhizosphere
100 3300046492 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-13-Co3_21_57 rhizosphere Metagenome Rhizosphere
101 3300046507 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co2_62_14 rhizosphere Metagenome Rhizosphere
102 3300046512 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co2_50_17 rhizosphere Metagenome Rhizosphere
103 3300046513 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-351-Co2_42_17 rhizosphere Metagenome Rhizosphere
104 3300046524 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co1_12_9 rhizosphere Metagenome Rhizosphere
105 3300046558 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-56-Co3_6_53 rhizosphere Metagenome Rhizosphere
106 3300046616 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-4579-Co1_14_4 rhizosphere Metagenome Rhizosphere
107 3300046660 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-388-Co1_32_7 rhizosphere Metagenome Rhizosphere
108 3300046665 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-904-Co3_16_51 rhizosphere Metagenome Rhizosphere
109 3300046692 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 rhizosphere Metagenome Rhizosphere
110 3300046694 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-847-Co2_69_13 rhizosphere Metagenome Rhizosphere
111 3300049703 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J2_A_2_control Metagenome Rhizosphere
112 3300050005 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E22_A_7_drought Metagenome Rhizosphere
113 3300050493 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-1 re-annotation Metagenome Endosphere
114 3300050507 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD1 re-annotation Metagenome Rhizosphere
115 3300053088 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-7986-Co1_37_5 endosphere Metagenome Endosphere
116 3300053092 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-331-Co3_15_40 endosphere Metagenome Endosphere
117 3300053093 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - GW-9591-Co2_62_24 endosphere Metagenome Endosphere
118 3300053108 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-133-Co2_50_25 endosphere Metagenome Endosphere
119 3300053125 Root microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-847-CL1_28_5 endosphere Metagenome Endosphere
120 3300053139 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-234-Co1_23_3 endosphere Metagenome Endosphere
121 3300053142 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-307-Co1_31_6 endosphere Metagenome Endosphere
122 3300053727 Root microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 endosphere Metagenome Endosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.67
Metatranscriptomes 0
Isolates 6.33

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 10.76
Nodule 0
Rhizoplane 0.63
Rhizosphere 81.01
Stem 0
Stem Tuber 0
Unclassified 7.59

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 SwRhRL2b_contig_1482229 2162886007 Bacteria 32470
2 ARcpr5yngRDRAFT_c001192 3300000043 Bacteria 2927
3 JGI24739J22299_10001206 3300001989 Bacteria 9682
4 JGI24739J22299_10002324 3300001989 Bacteria 7327
5 rootH2_10014335 3300003320 Bacteria 6955
6 rootH1_10351552 3300003323 Bacteria 2676
7 JGI25160J50197_1013444 3300003354 Bacteria 2790
8 Ga0070658_10002567 3300005327 Bacteria 15136
9 Ga0070683_100004733 3300005329 Bacteria 11255
10 Ga0070683_100035417 3300005329 Bacteria 4563
11 Ga0070670_100027316 3300005331 Bacteria 4910
12 Ga0070670_100042122 3300005331 Bacteria 3924
13 Ga0068869_100008883 3300005334 Bacteria 6501
14 Ga0070666_10000409 3300005335 Bacteria 26703
15 Ga0070661_100026404 3300005344 Bacteria 4177
16 Ga0070659_100008722 3300005366 Bacteria 7419
17 Ga0070667_100011454 3300005367 Bacteria 7333
18 Ga0070663_100076145 3300005455 Bacteria 2453
19 Ga0070698_100094162 3300005471 Bacteria 2974
20 Ga0070679_100004268 3300005530 Bacteria 13186
21 Ga0070679_100068837 3300005530 Unclassified 3531
22 Ga0068855_100003577 3300005563 Bacteria 18988
23 Ga0068852_100008971 3300005616 Bacteria 7400
24 Ga0068859_100000030 3300005617 Bacteria 175435
25 Ga0068859_100009860 3300005617 Bacteria 9643
26 Ga0068864_100004763 3300005618 Bacteria 11118
27 Ga0068863_100014144 3300005841 Bacteria 7688
28 Ga0068858_100026655 3300005842 Bacteria 5368
29 Ga0068860_100005755 3300005843 Bacteria 12501
30 Ga0068860_100031433 3300005843 Bacteria 5104
31 Ga0075366_10000514 3300006195 Bacteria 17870
32 Ga0097621_100055581 3300006237 Bacteria 3233
33 Ga0097620_100000030 3300006931 Bacteria 175435
34 Ga0097620_100009860 3300006931 Bacteria 9643
35 Ga0114129_10001614 3300009147 Bacteria 30617
36 Ga0105241_10009088 3300009174 Bacteria 7312
37 Ga0105241_10019486 3300009174 Bacteria 5003
38 Ga0105237_10018269 3300009545 Bacteria 7256
39 Ga0105249_10000967 3300009553 Bacteria 25430
40 Ga0105249_10001594 3300009553 Bacteria 19871
41 Ga0105246_10005699 3300011119 Bacteria 7600
42 Ga0157373_10000018 3300013100 Bacteria 169293
43 Ga0157373_10000109 3300013100 Bacteria 64743
44 Ga0157373_10032585 3300013100 Bacteria 3750
45 Ga0157371_10001565 3300013102 Bacteria 23529
46 Ga0157371_10003012 3300013102 Bacteria 15641
47 Ga0157371_10003262 3300013102 Bacteria 14878
48 Ga0157371_10006666 3300013102 Bacteria 9450
49 Ga0157371_10011813 3300013102 Bacteria 6706
50 Ga0157370_10009659 3300013104 Bacteria 10260
51 Ga0157374_10036274 3300013296 Bacteria 4515
52 Ga0157378_10018094 3300013297 Bacteria 6188
53 Ga0163162_10000323 3300013306 Bacteria 43956
54 Ga0163162_10000348 3300013306 Bacteria 42027
55 Ga0157372_10000449 3300013307 Bacteria 45309
56 Ga0157372_10000631 3300013307 Bacteria 38536
57 Ga0157372_10002976 3300013307 Bacteria 18253
58 Ga0157372_10003467 3300013307 Bacteria 17018
59 Ga0157372_10108827 3300013307 Bacteria 3173
60 Ga0163163_10005863 3300014325 Bacteria 10689
61 Ga0157379_10007725 3300014968 Bacteria 9309
62 Ga0157376_10064598 3300014969 Bacteria 3088
63 Ga0209436_102272 3300025208 Bacteria 5918
64 Ga0209258_100081 3300025242 Bacteria 254564
65 Ga0209646_1001422 3300025246 Bacteria 6451
66 Ga0209026_1000499 3300025250 Bacteria 28538
67 Ga0209148_1000276 3300025254 Bacteria 80610
68 Ga0209130_1000510 3300025284 Bacteria 39344
69 Ga0207426_1000024 3300025302 Bacteria 534075
70 Ga0207656_10019527 3300025321 Bacteria 2682
71 Ga0207680_10000347 3300025903 Bacteria 22173
72 Ga0207647_10001251 3300025904 Bacteria 19541
73 Ga0207705_10000494 3300025909 Bacteria 33635
74 Ga0207671_10026364 3300025914 Bacteria 4358
75 Ga0207660_10047377 3300025917 Bacteria 3038
76 Ga0207657_10050893 3300025919 Bacteria 3602
77 Ga0207649_10012573 3300025920 Bacteria 4701
78 Ga0207652_10000043 3300025921 Bacteria 128581
79 Ga0207650_10057075 3300025925 Bacteria 2903
80 Ga0207690_10034191 3300025932 Bacteria 3274
81 Ga0207689_10003612 3300025942 Bacteria 14132
82 Ga0207689_10036015 3300025942 Bacteria 4108
83 Ga0207661_10071753 3300025944 Bacteria 2831
84 Ga0207667_10001665 3300025949 Bacteria 27992
85 Ga0207712_10000718 3300025961 Bacteria 25508
86 Ga0207658_10007305 3300025986 Bacteria 7535
87 Ga0207703_10002529 3300026035 Bacteria 15802
88 Ga0207641_10000530 3300026088 Bacteria 42749
89 Ga0207648_10011221 3300026089 Bacteria 8449
90 Ga0207676_10003086 3300026095 Bacteria 11892
91 Ga0268265_10043738 3300028380 Bacteria 3331
92 Ga0268264_10002872 3300028381 Bacteria 14997
93 Ga0268264_10004356 3300028381 Bacteria 12082
94 Ga0268264_10018465 3300028381 Bacteria 5703
95 Ga0307515_10000001 3300028794 Bacteria 4259510
96 Ga0307515_10000071 3300028794 Bacteria 238152
97 Ga0307515_10001828 3300028794 Bacteria 47434
98 Ga0307408_100000365 3300031548 Bacteria 41732
99 Ga0307408_100001503 3300031548 Bacteria 17317
100 Ga0307412_10000009 3300031911 Bacteria 445987
101 Ga0307412_10002911 3300031911 Bacteria 9492
102 Ga0307414_10006550 3300032004 Bacteria 6499
103 Ga0373927_0037379 3300035695 Bacteria 3156
104 Ga0395899_0043820 3300037312 Bacteria 3335
105 Ga0395900_0025028 3300037418 Bacteria 6109
106 Ga0395898_0014463 3300037466 Bacteria 8105
107 Ga0395898_0093921 3300037466 Bacteria 2882
108 Ga0395905_0002927 3300037471 Bacteria 18592
109 Ga0395901_0012564 3300038443 Bacteria 8593
110 Ga0439457_001691 3300042014 Bacteria 6539
111 Ga0466969_0000151 3300044656 Bacteria 37632
112 Ga0466972_0000007 3300044658 Bacteria 277010
113 Ga0466972_0015389 3300044658 Bacteria 3823
114 Ga0466966_0000113 3300044684 Bacteria 49984
115 Ga0466957_0002318 3300044842 Bacteria 10206
116 Ga0466957_0010013 3300044842 Bacteria 5426
117 Ga0466959_0000015 3300045049 Bacteria 149242
118 Ga0466959_0007637 3300045049 Bacteria 7603
119 Ga0451576_0029716 3300045051 Bacteria 5846
120 Ga0451576_0119513 3300045051 Bacteria 2743
121 Ga0495650_0000003 3300046471 Bacteria 900730
122 Ga0495585_0000704 3300046492 Bacteria 30119
123 Ga0495606_0000002 3300046507 Bacteria 554637
124 Ga0495610_0006986 3300046512 Bacteria 7636
125 Ga0495616_0007142 3300046513 Bacteria 6700
126 Ga0495648_0006172 3300046524 Bacteria 9818
127 Ga0495633_0000043 3300046558 Bacteria 172356
128 Ga0495633_0017742 3300046558 Bacteria 3630
129 Ga0495668_0000127 3300046616 Bacteria 114097
130 Ga0495668_0006381 3300046616 Bacteria 7729
131 Ga0495625_0000005 3300046660 Bacteria 596135
132 Ga0495625_0000993 3300046660 Bacteria 37558
133 Ga0495661_0016448 3300046665 Bacteria 4903
134 Ga0495671_0021455 3300046692 Bacteria 3393
135 Ga0495649_0000003 3300046694 Bacteria 880817
136 Ga0501219_000047 3300049703 Bacteria 19832
137 Ga0501284_00011 3300050005 Bacteria 131008
138 nmdc:mga0k408_4417_c1 3300050493 Bacteria 7467
139 nmdc:mga0k408_570_c1 3300050493 Bacteria 20339
140 nmdc:mga05p37_18464_c1 3300050507 Bacteria 8425
141 Ga0500644_0000263 3300053088 Bacteria 29657
142 Ga0500583_0000053 3300053092 Bacteria 74724
143 Ga0500651_0000143 3300053093 Bacteria 44885
144 Ga0500562_000011 3300053108 Bacteria 179510
145 Ga0500618_000036 3300053125 Bacteria 118803
146 Ga0500568_0000792 3300053139 Bacteria 22308
147 Ga0500577_0004810 3300053142 Bacteria 3592
148 Ga0500611_000002 3300053727 Bacteria 345991

MSA Aligner

Download Fasta Download Aligned Fasta

Family Sequences

Sample Scaffold Protein Protein Length
1 3300044842 Ga0466957_0002318 Ga0466957_0002318_6907_8904 613
2 3300053092 Ga0500583_0000053 Ga0500583_0000053_5554_7707 669
3 3300025914 Ga0207671_10026364 Ga0207671_100263644 672
4 3300013104 Ga0157370_10009659 Ga0157370_100096594 679
5 3300044656 Ga0466969_0000151 Ga0466969_0000151_32246_34402 679
6 3300044684 Ga0466966_0000113 Ga0466966_0000113_38462_40618 679
7 3300045049 Ga0466959_0000015 Ga0466959_0000015_45275_47431 679
8 3300025942 Ga0207689_10036015 Ga0207689_100360152 681
9 iso_pu_bacteria 2928078545 2928079886 682
10 iso_pu_bacteria 2928147474 2928147661 682
11 3300005843 Ga0068860_100031433 Ga0068860_1000314333 690
12 3300028380 Ga0268265_10043738 Ga0268265_100437383 690
13 3300013307 Ga0157372_10003467 Ga0157372_100034676 692
14 3300003320 rootH2_10014335 rootH2_100143353 693
15 3300045051 Ga0451576_0029716 Ga0451576_0029716_396_2597 695
16 3300013102 Ga0157371_10006666 Ga0157371_100066664 699
17 3300013307 Ga0157372_10002976 Ga0157372_100029768 699
18 3300014325 Ga0163163_10005863 Ga0163163_100058633 701
19 3300005329 Ga0070683_100035417 Ga0070683_1000354173 703
20 3300005344 Ga0070661_100026404 Ga0070661_1000264042 703
21 3300025920 Ga0207649_10012573 Ga0207649_100125732 703
22 3300025944 Ga0207661_10071753 Ga0207661_100717532 703
23 3300035695 Ga0373927_0037379 Ga0373927_0037379_301_2415 703
24 3300037471 Ga0395905_0002927 Ga0395905_0002927_4803_6959 704
25 3300005334 Ga0068869_100008883 Ga0068869_1000088834 706
26 3300005335 Ga0070666_10000409 Ga0070666_100004099 706
27 3300005617 Ga0068859_100000030 Ga0068859_10000003020 706
28 3300005842 Ga0068858_100026655 Ga0068858_1000266553 706
29 3300006931 Ga0097620_100000030 Ga0097620_100000030124 706
30 3300009174 Ga0105241_10009088 Ga0105241_100090884 706
31 3300009545 Ga0105237_10018269 Ga0105237_100182693 706
32 3300009553 Ga0105249_10000967 Ga0105249_100009673 706
33 3300013306 Ga0163162_10000348 Ga0163162_100003484 706
34 3300014968 Ga0157379_10007725 Ga0157379_100077254 706
35 3300025903 Ga0207680_10000347 Ga0207680_100003478 706
36 3300025942 Ga0207689_10003612 Ga0207689_100036123 706
37 3300025961 Ga0207712_10000718 Ga0207712_100007183 706
38 3300026035 Ga0207703_10002529 Ga0207703_1000252910 706
39 3300026088 Ga0207641_10000530 Ga0207641_1000053023 706
40 3300028381 Ga0268264_10004356 Ga0268264_100043567 706
41 3300011119 Ga0105246_10005699 Ga0105246_100056995 707
42 iso_pu_bacteria 2818991460 2819676896 708
43 3300013102 Ga0157371_10011813 Ga0157371_100118132 709
44 3300025242 Ga0209258_100081 Ga0209258_10008112 709
45 3300025254 Ga0209148_1000276 Ga0209148_100027612 709
46 3300037466 Ga0395898_0014463 Ga0395898_0014463_1905_4037 709
47 3300038443 Ga0395901_0012564 Ga0395901_0012564_2860_4992 709
48 3300053088 Ga0500644_0000263 Ga0500644_0000263_18443_20575 709
49 3300053142 Ga0500577_0004810 Ga0500577_0004810_332_2464 709
50 3300005329 Ga0070683_100004733 Ga0070683_1000047334 710
51 3300013100 Ga0157373_10000018 Ga0157373_1000001852 710
52 3300013307 Ga0157372_10000631 Ga0157372_100006319 710
53 3300025250 Ga0209026_1000499 Ga0209026_10004999 710
54 iso_pu_bacteria 2929177148 2929177747 710
55 iso_pu_bacteria 2946013367 2946014044 710
56 3300045049 Ga0466959_0007637 Ga0466959_0007637_290_2428 712
57 3300003354 JGI25160J50197_1013444 JGI25160J50197_10134441 713
58 3300013306 Ga0163162_10000323 Ga0163162_1000032325 713
59 3300025208 Ga0209436_102272 Ga0209436_1022722 713
60 3300025284 Ga0209130_1000510 Ga0209130_100051024 713
61 3300025302 Ga0207426_1000024 Ga0207426_100002426 713
62 3300025919 Ga0207657_10050893 Ga0207657_100508932 714
63 3300000043 ARcpr5yngRDRAFT_c001192 ARcpr5yngRDRAFT_0011922 715
64 3300005366 Ga0070659_100008722 Ga0070659_1000087222 715
65 3300005616 Ga0068852_100008971 Ga0068852_1000089714 715
66 3300013296 Ga0157374_10036274 Ga0157374_100362743 715
67 3300014969 Ga0157376_10064598 Ga0157376_100645982 715
68 3300025246 Ga0209646_1001422 Ga0209646_10014224 715
69 3300025904 Ga0207647_10001251 Ga0207647_100012517 715
70 3300025932 Ga0207690_10034191 Ga0207690_100341912 715
71 3300028381 Ga0268264_10018465 Ga0268264_100184653 715
72 3300046616 Ga0495668_0006381 Ga0495668_0006381_2432_4585 715
73 3300049703 Ga0501219_000047 Ga0501219_000047_2229_4379 715
74 3300050005 Ga0501284_00011 Ga0501284_00011_93766_95916 715
75 3300053108 Ga0500562_000011 Ga0500562_000011_47536_49686 715
76 3300005331 Ga0070670_100027316 Ga0070670_1000273162 716
77 3300005331 Ga0070670_100042122 Ga0070670_1000421221 716
78 3300005367 Ga0070667_100011454 Ga0070667_1000114542 716
79 3300005530 Ga0070679_100004268 Ga0070679_1000042683 716
80 3300005617 Ga0068859_100009860 Ga0068859_1000098607 716
81 3300005618 Ga0068864_100004763 Ga0068864_1000047633 716
82 3300005841 Ga0068863_100014144 Ga0068863_1000141442 716
83 3300005843 Ga0068860_100005755 Ga0068860_1000057556 716
84 3300006237 Ga0097621_100055581 Ga0097621_1000555811 716
85 3300006931 Ga0097620_100009860 Ga0097620_1000098602 716
86 3300009174 Ga0105241_10019486 Ga0105241_100194862 716
87 3300009553 Ga0105249_10001594 Ga0105249_1000159411 716
88 3300013100 Ga0157373_10032585 Ga0157373_100325853 716
89 3300013297 Ga0157378_10018094 Ga0157378_100180943 716
90 3300013307 Ga0157372_10108827 Ga0157372_101088272 716
91 3300025321 Ga0207656_10019527 Ga0207656_100195272 716
92 3300025917 Ga0207660_10047377 Ga0207660_100473772 716
93 3300025921 Ga0207652_10000043 Ga0207652_1000004310 716
94 3300025925 Ga0207650_10057075 Ga0207650_100570752 716
95 3300025986 Ga0207658_10007305 Ga0207658_100073057 716
96 3300026095 Ga0207676_10003086 Ga0207676_100030867 716
97 3300028381 Ga0268264_10002872 Ga0268264_1000287211 716
98 3300028794 Ga0307515_10000071 Ga0307515_1000007123 716
99 3300037312 Ga0395899_0043820 Ga0395899_0043820_1141_3294 716
100 3300044658 Ga0466972_0000007 Ga0466972_0000007_244129_246336 716
101 3300044658 Ga0466972_0015389 Ga0466972_0015389_519_2726 716
102 3300044842 Ga0466957_0010013 Ga0466957_0010013_1589_3811 716
103 3300045051 Ga0451576_0119513 Ga0451576_0119513_263_2419 716
104 3300053727 Ga0500611_000002 Ga0500611_000002_9516_11669 716
105 3300005327 Ga0070658_10002567 Ga0070658_100025673 717
106 3300005455 Ga0070663_100076145 Ga0070663_1000761451 717
107 3300005471 Ga0070698_100094162 Ga0070698_1000941622 717
108 3300005530 Ga0070679_100068837 Ga0070679_1000688372 717
109 3300005563 Ga0068855_100003577 Ga0068855_1000035773 717
110 3300009147 Ga0114129_10001614 Ga0114129_1000161413 717
111 3300013102 Ga0157371_10003262 Ga0157371_100032629 717
112 3300013307 Ga0157372_10000449 Ga0157372_1000044918 717
113 3300025909 Ga0207705_10000494 Ga0207705_100004949 717
114 3300025949 Ga0207667_10001665 Ga0207667_100016653 717
115 3300026089 Ga0207648_10011221 Ga0207648_100112214 717
116 3300028794 Ga0307515_10000001 Ga0307515_100000013023 717
117 3300037418 Ga0395900_0025028 Ga0395900_0025028_3390_5588 717
118 3300037466 Ga0395898_0093921 Ga0395898_0093921_109_2307 717
119 3300042014 Ga0439457_001691 Ga0439457_001691_2751_4907 717
120 3300050507 nmdc:mga05p37_18464_c1 nmdc:mga05p37_18464_c1_1413_3569 717
121 3300053139 Ga0500568_0000792 Ga0500568_0000792_10184_12394 717
122 iso_pu_bacteria 2599185184 2599477926 717
123 iso_pu_bacteria 2738541278 2738724374 717
124 iso_pu_bacteria 2919437846 2919438829 717
125 iso_pu_bacteria 2919186247 2919187425 718
126 iso_pu_bacteria 2939664404 2939665308 718
127 3300031548 Ga0307408_100000365 Ga0307408_1000003658 719
128 3300031548 Ga0307408_100001503 Ga0307408_1000015039 720
129 3300031911 Ga0307412_10002911 Ga0307412_100029112 720
130 2162886007 SwRhRL2b_contig_1482229 SwRhRL2b_0127.00001620 721
131 3300001989 JGI24739J22299_10001206 JGI24739J22299_100012062 721
132 3300001989 JGI24739J22299_10002324 JGI24739J22299_100023246 721
133 3300003323 rootH1_10351552 rootH1_103515522 721
134 3300006195 Ga0075366_10000514 Ga0075366_100005148 721
135 3300013100 Ga0157373_10000109 Ga0157373_1000010940 721
136 3300013102 Ga0157371_10001565 Ga0157371_1000156512 721
137 3300013102 Ga0157371_10003012 Ga0157371_100030126 721
138 3300028794 Ga0307515_10001828 Ga0307515_1000182820 721
139 3300031911 Ga0307412_10000009 Ga0307412_10000009187 721
140 3300032004 Ga0307414_10006550 Ga0307414_100065502 721
141 3300046471 Ga0495650_0000003 Ga0495650_0000003_472023_474191 721
142 3300046492 Ga0495585_0000704 Ga0495585_0000704_18665_20833 721
143 3300046507 Ga0495606_0000002 Ga0495606_0000002_478426_480594 721
144 3300046512 Ga0495610_0006986 Ga0495610_0006986_2566_4737 721
145 3300046513 Ga0495616_0007142 Ga0495616_0007142_2335_4503 721
146 3300046524 Ga0495648_0006172 Ga0495648_0006172_215_2383 721
147 3300046558 Ga0495633_0000043 Ga0495633_0000043_151347_153518 721
148 3300046558 Ga0495633_0017742 Ga0495633_0017742_605_2776 721
149 3300046616 Ga0495668_0000127 Ga0495668_0000127_13247_15415 721
150 3300046660 Ga0495625_0000005 Ga0495625_0000005_407585_409753 721
151 3300046660 Ga0495625_0000993 Ga0495625_0000993_1887_4055 721
152 3300046665 Ga0495661_0016448 Ga0495661_0016448_840_3008 721
153 3300046692 Ga0495671_0021455 Ga0495671_0021455_54_2222 721
154 3300046694 Ga0495649_0000003 Ga0495649_0000003_588343_590511 721
155 3300050493 nmdc:mga0k408_4417_c1 nmdc:mga0k408_4417_c1_5247_7415 721
156 3300050493 nmdc:mga0k408_570_c1 nmdc:mga0k408_570_c1_5824_7992 721
157 3300053093 Ga0500651_0000143 Ga0500651_0000143_23205_25370 721
158 3300053125 Ga0500618_000036 Ga0500618_000036_67529_69697 721

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF02065

Melibiase

Melibiase

303

644

0.97

PF16874

Glyco_hydro_36C

Glycosyl hydrolase family 36 C-terminal domain

657

748

0.94

PF16875

Glyco_hydro_36N

Glycosyl hydrolase family 36 N-terminal domain

73

299

0.9

PF02638

GHL10

Glycosyl hydrolase-like 10

392

531

0.79

Structural Annotation

Top 5 Hits

ID Description Score Start End
4fnu-assembly1.cif.gz_D crystal structure of gh36 alpha-galactosidase agaa a355e d478a from geobacillus stearothermophilus in complex with stachyose 0.9078 25 720
4fns-assembly1.cif.gz_D crystal structure of gh36 alpha-galactosidase agaa a355e from geobacillus stearothermophilus in complex with 1-deoxygalactonojirimycin 0.9058 25 720
4fnt-assembly1.cif.gz_D crystal structure of gh36 alpha-galactosidase agaa a355e d548n from geobacillus stearothermophilus in complex with raffinose 0.9028 25 720
2xn0-assembly1.cif.gz_A structure of alpha-galactosidase from lactobacillus acidophilus ncfm, ptcl4 derivative 0.9008 24 721
3mi6-assembly1.cif.gz_D crystal structure of the alpha-galactosidase from lactobacillus brevis, northeast structural genomics consortium target lbr11. 0.8992 22 721
ID Description Score Start End Superfamily
2yfnA01 Mainly Beta;Distorted Sandwich;Beta-galactosidase; Chain A, domain 5;alpha-galactosidase from lactobacil brevis 0.9093 24 286 2.70.98.60
2xn2A01 Mainly Beta;Distorted Sandwich;Beta-galactosidase; Chain A, domain 5;alpha-galactosidase from lactobacil brevis 0.9043 24 291 2.70.98.60
2xn0A03 Mainly Beta;Sandwich;Immunoglobulin-like;Golgi alpha-mannosidase II 0.8952 612 721 2.60.40.1180
4fnqA01 Mainly Beta;Distorted Sandwich;Beta-galactosidase; Chain A, domain 5;alpha-galactosidase from lactobacil brevis 0.8932 21 291 2.70.98.60
3mi6D01 Mainly Beta;Distorted Sandwich;Beta-galactosidase; Chain A, domain 5;alpha-galactosidase from lactobacil brevis 0.8827 22 286 2.70.98.60
ID Description Score Start End GO Terms
AF-A0A819Z475-F1-model_v4 alpha-galactosidase (EC 3.2.1.22) 0.9697 25 318 GO:0004557
GO:0016052
AF-A0A7J5J963-F1-model_v4 alpha-galactosidase (EC 3.2.1.22) 0.9669 92 455 GO:0004557
GO:0016052
AF-A0A5J4RS62-F1-model_v4 alpha-galactosidase (EC 3.2.1.22) 0.966 151 531 GO:0004557
GO:0016052
AF-A0A5J4RS62-F1-model_v4 alpha-galactosidase (EC 3.2.1.22) 0.9635 151 531 GO:0004557
GO:0016052
AF-A0A820HUL2-F1-model_v4 Glycosyl hydrolase family 36 N-terminal domain-containing protein 0.9629 25 263

Feature Viewer

pLDDT pTM Quality
83.54 0.88 High
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Predicted Structure (AlphaFold2)

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