|
Taxon Oid |
3300000043
|
| Ncbi Domain |
*Microbiome |
| Sequencing Status |
Draft |
| Study Name |
Arabidopsis rhizosphere microbial communities from the University of North Carolina |
| Genome Name Sample Name |
Arabidopsis rhizosphere microbial communities from the University of North Carolina - sample from Arabidopsis cpr5 young rhizosphere |
| Sequencing Center |
DOE Joint Genome Institute (JGI) |
| Img Genome Id |
3300000043 |
| Ncbi Phylum |
Host-associated |
| Ncbi Class |
Plants |
| Ncbi Order |
Roots |
| Ncbi Family |
Rhizosphere |
| Ncbi Genus |
Unclassified |
| Ncbi Species |
Arabidopsis rhizosphere microbial communities from the University of North Carolina |
| Img Submission Id |
7114 |
|
Gold Analysis Project Id
|
Ga0026158
|
| Gold Analysis Project Type |
Metagenome Analysis |
|
Gold Sequencing Project Id
|
Gp0053516
|
|
Gold Study Id
|
Gs0046726
|
| Add Date |
04/07/2012 00:00:00 |
| Assembly Method |
SOAPdenovo, Newbler, Minimus2 |
| Comments |
released based on JGI ITS |
| Funding Agency |
DOE; NSF |
| Has Coverage |
True |
| Public Release Date |
01/22/2022 00:00:00 |
| Submission Type |
Primary |
| In File |
Yes |
| Submitter Name |
Stephanie Malfatti |
| Rnd Project |
True |
| Alt2 Contact Emails |
[email protected]; [email protected] |
| Alt2 Contact Names |
Susannah Tringe; Jeff Dangl |
| Contact Email |
[email protected], [email protected]; [email protected] |
| Contact Name |
Susannah Tringe, Susannah Tringe; Jeff Dangl |
| Award Doi |
10.46936/10.25585/60007486 |
| Funding Program |
Grand Challenge |
| Funding Year |
2009 |
| Is Published |
True |
| Pmo Project Id |
404983 |
| Pubmed Id |
22859206 |
| Ncbi Bioproject Accession |
PRJNA336722 |
| Ncbi Biosample Accession |
SAMN05518391 |
| Sequencing Method |
Illumina HiSeq 2000 |
| Sequencing Strategy |
Metagenome |
| Ecosystem |
Host-associated |
| Ecosystem Category |
Plants |
| Ecosystem Subtype |
Rhizosphere |
| Ecosystem Type |
Roots |
| Specific Ecosystem |
Unclassified |
| Cultured |
False |
| Elevation In Meters |
130.000000 |
| Geographic Location |
University of North Carolina, USA |
| Habitat |
Arabidopsis rhizosphere |
| Isolation |
Arabidopsis rhizosphere from growth chamber and greenhouse at University of North Carolina, USA |
| Isolation Country |
8855 |
| Latitude |
35.9 |
| Longitude |
-79.05 |
| Sample Collection Date |
2011/6/5 |
| Host Name |
Arabidopsis thaliana |
| Genome Size Assembled |
81273565 |
| Gene Count Assembled |
240846 |