F228516

General Info

Members Datasets Scaffolds Average Seq Length
157 130 148 420

Family's Representative Sequence

Representative Sequence iso_pu_bacteria|2874604998|2874606717
Length 484
Sequence DRPRPRAQLPGQRAIGCAQGFSEYLRRLPMIFSLDVRRARKGDCLLLHFGTKQEPGLIMIDGGPRSVYAPHLKPRLMEIREARKIKKNDPLPIDVLMVSHVDDDHIQGILDFTREEIANVEAHKPRLLNVFSLWHNSFDDIIGGQPAELTAKVNATFKTEASTGAVELSDEKVESVEDIFIDQNPGGNDAADAEVVGSSLKVLASIAQGFRLRRDADRLGYGRNAEFGGKLIAAPQGKAPTRIANSLDVTVIGPMLEEIEALHKDHQKWLEDLKKQGKTPEEALAAYVDKSVPNLSSIVVLVEVDKRRMLLTGDARGDKILKGLQLAGKLDKDDGTKIEVDLLKVPHHGSSNNLDKDFFERIIAKHYVFSGDGEHGNPERESLEMLLKARKDGDYQIHLTYPLKEIDQLREEDWNKERNKQIARKKKSGKGTVREEWSAQDHGLLALFDANPQFKGKLRIVDKKKPHIIDLGDPLAASWPALAN

Samples

Sample ID Description Type Environment
1 2617270741 Bradyrhizobium yuanmingense CCBAU 10071 Isolate Nodule
2 2738541274 Mycobacterium sp. YR708 Isolate Unclassified
3 2738543028 Mycobacterium sp. YR782 Isolate Unclassified
4 2824679649 Bradyrhizobium sp.HAMBI 2116 Isolate Unclassified
5 2824732956 Bradyrhizobium sp. HAMBI 2153 Isolate Unclassified
6 2824746037 Bradyrhizobium sp. HAMBI 2299 Isolate Unclassified
7 2857509624 Bradyrhizobium sp. R-73088 Isolate Unclassified
8 2874604998 Bradyrhizobium sp. LMTR 3 Isolate Nodule
9 2908775508 Bradyrhizobium sp. SUTN9-2 Isolate Unclassified
10 2922393267 Bradyrhizobium sp. WBAH10 Isolate Nodule
11 3300003215 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF Metagenome Endosphere
12 3300003316 Sugarcane root Sample L1 Metagenome Unclassified
13 3300003322 Sugarcane root Sample L2 Metagenome Unclassified
14 3300005290 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Rhizosphere Soil Replicate 1: eDNA_1 v3 (version 3) Metagenome Rhizosphere
15 3300005293 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, MSU, sample Bulk Soil Replicate 1 : eDNA_1 v2 (version 2) Metagenome Rhizosphere
16 3300005295 Switchgrass rhizosphere bacterial communities from Rose Lake, Michigan, USA - RL3 v2 (version 2) Metagenome Rhizosphere
17 3300005331 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG Metagenome Rhizosphere
18 3300005333 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG Metagenome Rhizosphere
19 3300005334 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M5-2 Metagenome Rhizosphere
20 3300005335 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG Metagenome Rhizosphere
21 3300005345 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-2 metaG Metagenome Rhizosphere
22 3300005354 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG Metagenome Rhizosphere
23 3300005367 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3 metaG Metagenome Rhizosphere
24 3300005434 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG Metagenome Rhizosphere
25 3300005436 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-2 metaG Metagenome Rhizosphere
26 3300005440 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-3 metaG Metagenome Rhizosphere
27 3300005441 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-1 metaG Metagenome Rhizosphere
28 3300005444 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-25-1 metaG Metagenome Rhizosphere
29 3300005456 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG Metagenome Rhizosphere
30 3300005459 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 Metagenome Rhizosphere
31 3300005539 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 Metagenome Rhizosphere
32 3300005543 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG Metagenome Rhizosphere
33 3300005544 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3L metaG Metagenome Rhizosphere
34 3300005547 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K1-10-3 metaG Metagenome Rhizosphere
35 3300005548 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG Metagenome Rhizosphere
36 3300005549 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-25-2 metaG Metagenome Rhizosphere
37 3300005615 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-10-3 metaG Metagenome Rhizosphere
38 3300005618 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 Metagenome Rhizosphere
39 3300005840 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 Metagenome Rhizosphere
40 3300005841 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 Metagenome Rhizosphere
41 3300005843 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 Metagenome Rhizosphere
42 3300005937 Tabebuia heterophylla rhizosphere microbial communities from the University of Puerto Rico - S3T2R1 Metagenome Rhizosphere
43 3300006175 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L8-1 metaG Metagenome Rhizosphere
44 3300006178 Populus endosphere microbial communities from Tennessee, USA - Endosphere MetaG P. TD hybrid TD303-2 Metagenome Endosphere
45 3300006237 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M7-2 (version 2) (version 2) Metagenome Rhizosphere
46 3300006846 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD4 Metagenome Rhizosphere
47 3300006852 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 Metagenome Rhizosphere
48 3300006914 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD5 Metagenome Rhizosphere
49 3300007076 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 Metagenome Rhizosphere
50 3300009094 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD1 (version 2) (version 2) Metagenome Rhizosphere
51 3300009098 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG Metagenome Rhizosphere
52 3300009174 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-4 metaG Metagenome Rhizosphere
53 3300009176 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG Metagenome Rhizosphere
54 3300009177 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-4 metaG Metagenome Rhizosphere
55 3300009551 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C3-4 metaG Metagenome Rhizosphere
56 3300009553 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG Metagenome Rhizosphere
57 3300010375 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C4-4 metaG Metagenome Rhizosphere
58 3300011119 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-4 metaG Metagenome Rhizosphere
59 3300013100 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C6-5 metaG Metagenome Rhizosphere
60 3300013306 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S5-5 metaG Metagenome Rhizosphere
61 3300013308 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - M3-5 metaG Metagenome Rhizosphere
62 3300014326 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S3-5 metaG Metagenome Rhizosphere
63 3300014968 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - S2-5 metaG Metagenome Rhizosphere
64 3300021320 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS3 Metagenome Nodule
65 3300021321 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS1 Metagenome Nodule
66 3300021324 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS4 Metagenome Nodule
67 3300021327 Root nodule microbial communities from cowpea collected in UCLA plant growth center, Los Angeles, California, USA - CNSS2 Metagenome Nodule
68 3300025297 Arabidopsis root microbial communities from the University of North Carolina, USA - plate scrape MF_Col_mMF (SPAdes) (version 2) Metagenome Endosphere
69 3300025893 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
70 3300025904 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - C2 (SPAdes) (version 2) Metagenome Rhizosphere
71 3300025906 Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L5-1 metaG (SPAdes) (version 2) Metagenome Rhizosphere
72 3300025907 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
73 3300025908 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M6-2 (SPAdes) (version 2) Metagenome Rhizosphere
74 3300025918 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S3-3L metaG (SPAdes) (version 2) Metagenome Rhizosphere
75 3300025923 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
76 3300025925 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S6-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
77 3300025926 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M4-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
78 3300025927 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M5-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
79 3300025933 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C5-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
80 3300025934 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
81 3300025935 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-4 metaG (SPAdes) (version 2) Metagenome Rhizosphere
82 3300025936 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3H metaG (SPAdes) (version 2) Metagenome Rhizosphere
83 3300025937 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M3-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
84 3300025940 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
85 3300025945 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
86 3300025960 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M2-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
87 3300026041 Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Corn C3-2 (SPAdes) (version 2) Metagenome Rhizosphere
88 3300026088 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S6-2 (SPAdes) (version 2) Metagenome Rhizosphere
89 3300026089 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes) (version 2) Metagenome Rhizosphere
90 3300026095 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S7-2 (SPAdes) (version 2) Metagenome Rhizosphere
91 3300026118 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S4-2 (SPAdes) (version 2) Metagenome Rhizosphere
92 3300026121 Miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
93 3300028379 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S1-3 metaG (SPAdes) (version 2) Metagenome Rhizosphere
94 3300028381 Switchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S3-2 (SPAdes) (version 2) Metagenome Rhizosphere
95 3300031548 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-3 Metagenome Rhizosphere
96 3300031901 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-C-2 Metagenome Rhizosphere
97 3300031911 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-1 Metagenome Rhizosphere
98 3300031995 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - 322HYB-O-2 Metagenome Rhizosphere
99 3300032005 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-O-1 Metagenome Rhizosphere
100 3300032126 Maize rhizosphere microbial communities from greenhouse at UC Davis, California, United States - DK15-C-2 Metagenome Rhizosphere
101 3300035091 Populus rhizosphere microbial communities from soil in West Virginia, United States - GW9791_WV_N_4 Metagenome Rhizosphere
102 3300036401 Populus rhizosphere microbial communities from soil in Oregon, United States - WV94_Oregon_NoN_16 Metagenome Rhizosphere
103 3300042156 Rhizosphere microbial communities from Sorghum plant, Scottsbluff, Nebraska, USA - SB0116WE14Z082817_5593 Metagenome Rhizosphere
104 3300042461 Rhizosphere microbial communities from Sorghum plant, Central City, Nebraska, USA - CC0612LE14Z071817_5366 Metagenome Rhizosphere
105 3300045051 Rhizosphere soil microbial communities from rice plant in Newark, Delaware, United States - Rhiz_9BH_GED Metagenome Rhizosphere
106 3300046455 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-307-CL1_26_33 rhizosphere Metagenome Rhizosphere
107 3300046460 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-833-Co3_31_37 rhizosphere Metagenome Rhizosphere
108 3300046499 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-234-CL1_24_28 rhizosphere Metagenome Rhizosphere
109 3300046522 Rhizosphere soil microbial communities from poplar common garden site in Corvallis, Oregon, USA - BESC-845-Co2_60_28 rhizosphere Metagenome Rhizosphere
110 3300046642 Rhizosphere soil microbial communities from poplar common garden site in Clatskanie, Oregon, USA - BESC-833-CL2_42_16 rhizosphere Metagenome Rhizosphere
111 3300048909 Rhizoplane soil microbial communities from switchgrass plant in W.K. Kellogg Biological Station, Michigan, USA - CIR rhizoplane_3c N15 Metagenome Rhizoplane
112 3300049519 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C22_B_7_drought Metagenome Rhizosphere
113 3300049521 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - E25_B_7_drought Metagenome Rhizosphere
114 3300049523 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - J25_B_7_control Metagenome Rhizosphere
115 3300049574 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_02 Metagenome Rhizosphere
116 3300049575 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L2_TR_GHRAS_03 Metagenome Rhizosphere
117 3300049578 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L3_TR_GHRAS_03 Metagenome Rhizosphere
118 3300049587 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L1_T2_FRAS_02 Metagenome Rhizosphere
119 3300049592 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_01 Metagenome Rhizosphere
120 3300049593 Sugarcane rhizosphere microbial communities from experimental field in University of Florida, Reddick, FL, USA - L3_T2_FRAS_02 Metagenome Rhizosphere
121 3300049660 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - D2_B_0_control Metagenome Rhizosphere
122 3300049661 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - I5_B_0_control Metagenome Rhizosphere
123 3300049669 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_B_2_drought Metagenome Rhizosphere
124 3300049705 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C1_A_2_drought Metagenome Rhizosphere
125 3300049779 Panicgrass rhizosphere microbial communities from growth chamber in LBNL, Berkeley, California, USA - C22_A_7_drought Metagenome Rhizosphere
126 3300049824 Sugarcane rhizosphere microbial communities from a greenhouse in University of Florida, Reddick, FL, USA - L4_TR_GHRAS_03 Metagenome Rhizosphere
127 3300050508 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD3 re-annotation Metagenome Rhizosphere
128 3300050510 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. deltoides SRZDD5 re-annotation Metagenome Rhizosphere
129 3300050513 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD4 re-annotation Metagenome Rhizosphere
130 3300050515 Populus rhizosphere microbial communities from Tennessee, USA - Rhizosphere MetaG P. TD hybrid SRZTD2 re-annotation Metagenome Rhizosphere

Type Distribution

Type Percentage (%)
Metagenomes 93.63
Metatranscriptomes 0
Isolates 6.37

Biome Distribution

Category Percentage (%)
Aerial Root 0
Bulb 0
Endosphere 1.91
Nodule 4.46
Rhizoplane 0.64
Rhizosphere 86.62
Stem 0
Stem Tuber 0
Unclassified 6.37

Taxonomy

Scaffolds

Scaffold Dataset Taxonomy Length
1 JGI25153J46596_10006748 3300003215 Bacteria 5757
2 rootH1_10000039 3300003316 Bacteria 23242
3 rootH1_10000039 3300003323 Bacteria 6950
4 rootL2_10130208 3300003322 Bacteria 3680
5 rootL2_10254657 3300003322 Bacteria 1820
6 Ga0065712_10003098 3300005290 Unclassified 3941
7 Ga0065715_10022829 3300005293 Unclassified 2072
8 Ga0065707_10085878 3300005295 Bacteria 5825
9 Ga0070670_100082572 3300005331 Unclassified 2761
10 Ga0070670_100129002 3300005331 Unclassified 2183
11 Ga0070677_10049057 3300005333 Bacteria 1698
12 Ga0070677_10070087 3300005333 Bacteria 1472
13 Ga0068869_100128047 3300005334 Bacteria 1949
14 Ga0070666_10076335 3300005335 Bacteria 2286
15 Ga0070692_10044551 3300005345 Unclassified 2286
16 Ga0070675_100012017 3300005354 Bacteria 6786
17 Ga0070675_100026455 3300005354 Bacteria 4656
18 Ga0070667_100059149 3300005367 Bacteria 3241
19 Ga0070667_100235214 3300005367 Bacteria 1634
20 Ga0070709_10000009 3300005434 Bacteria 178953
21 Ga0070713_100042660 3300005436 Bacteria 3704
22 Ga0070705_100000804 3300005440 Bacteria 17709
23 Ga0070700_100091959 3300005441 Bacteria 1982
24 Ga0070694_100009506 3300005444 Bacteria 5964
25 Ga0070694_100015758 3300005444 Bacteria 4754
26 Ga0070678_100021864 3300005456 Unclassified 4228
27 Ga0068867_100277697 3300005459 Bacteria 1373
28 Ga0068853_100018495 3300005539 Bacteria 5769
29 Ga0070672_100039834 3300005543 Bacteria 3602
30 Ga0070672_100079204 3300005543 Bacteria 2629
31 Ga0070686_100014619 3300005544 Bacteria 4528
32 Ga0070693_100003840 3300005547 Bacteria 7039
33 Ga0070665_100027597 3300005548 Bacteria 5718
34 Ga0070704_100069295 3300005549 Bacteria 2555
35 Ga0070702_100003280 3300005615 Bacteria 7208
36 Ga0068864_100031717 3300005618 Bacteria 4485
37 Ga0068864_100236312 3300005618 Bacteria 1692
38 Ga0068864_100270303 3300005618 Bacteria 1584
39 Ga0068870_10002974 3300005840 Bacteria 7150
40 Ga0068870_10016315 3300005840 Bacteria 3545
41 Ga0068870_10106979 3300005840 Bacteria 1591
42 Ga0068863_100109274 3300005841 Bacteria 2632
43 Ga0068863_100264318 3300005841 Bacteria 1664
44 Ga0068860_100038781 3300005843 Bacteria 4557
45 Ga0081455_10038325 3300005937 Bacteria 4245
46 Ga0081455_10056287 3300005937 Bacteria 3340
47 Ga0070712_100180560 3300006175 Unclassified 1644
48 Ga0075367_10108734 3300006178 Unclassified 1700
49 Ga0097621_100005248 3300006237 Bacteria 9116
50 Ga0075430_100228145 3300006846 Bacteria 1544
51 Ga0075433_10034513 3300006852 Bacteria 4345
52 Ga0075436_100064987 3300006914 Bacteria 2522
53 Ga0075435_100010355 3300007076 Bacteria 6817
54 Ga0111539_10254901 3300009094 Bacteria 2043
55 Ga0105245_10025991 3300009098 Bacteria 5151
56 Ga0105241_10139565 3300009174 Unclassified 1972
57 Ga0105242_10020373 3300009176 Bacteria 5199
58 Ga0105248_10078523 3300009177 Bacteria 3710
59 Ga0105238_10037444 3300009551 Unclassified 4931
60 Ga0105238_10058854 3300009551 Unclassified 3851
61 Ga0105249_10189508 3300009553 Bacteria 2006
62 Ga0105239_10117377 3300010375 Bacteria 2953
63 Ga0105246_10166843 3300011119 Unclassified 1682
64 Ga0157373_10087418 3300013100 Unclassified 2196
65 Ga0163162_10047676 3300013306 Unclassified 4294
66 Ga0157375_10134643 3300013308 Bacteria 2593
67 Ga0157375_10367761 3300013308 Unclassified 1604
68 Ga0157380_10030878 3300014326 Bacteria 4108
69 Ga0157379_10200419 3300014968 Unclassified 1805
70 Ga0214544_1000004 3300021320 Bacteria 455869
71 Ga0214542_1000442 3300021321 Bacteria 74244
72 Ga0214545_1000001 3300021324 Bacteria 1092817
73 Ga0214543_1000006 3300021327 Bacteria 443395
74 Ga0209758_1006581 3300025297 Bacteria 8248
75 Ga0207682_10012913 3300025893 Bacteria 3257
76 Ga0207647_10003766 3300025904 Bacteria 11337
77 Ga0207699_10000020 3300025906 Bacteria 179154
78 Ga0207645_10039320 3300025907 Bacteria 3031
79 Ga0207643_10014583 3300025908 Bacteria 4272
80 Ga0207643_10017527 3300025908 Bacteria 3917
81 Ga0207643_10024294 3300025908 Bacteria 3343
82 Ga0207643_10053329 3300025908 Bacteria 2297
83 Ga0207662_10008163 3300025918 Bacteria 5724
84 Ga0207681_10100100 3300025923 Unclassified 2089
85 Ga0207650_10006031 3300025925 Bacteria 8269
86 Ga0207659_10007290 3300025926 Bacteria 6794
87 Ga0207659_10098763 3300025926 Unclassified 2196
88 Ga0207687_10031378 3300025927 Bacteria 3590
89 Ga0207706_10038020 3300025933 Bacteria 4270
90 Ga0207686_10038255 3300025934 Unclassified 2902
91 Ga0207709_10134085 3300025935 Bacteria 1692
92 Ga0207670_10122586 3300025936 Bacteria 1892
93 Ga0207669_10158127 3300025937 Bacteria 1597
94 Ga0207691_10010594 3300025940 Bacteria 8842
95 Ga0207679_10149750 3300025945 Bacteria 1897
96 Ga0207651_10043216 3300025960 Bacteria 3006
97 Ga0207639_10024882 3300026041 Bacteria 4337
98 Ga0207641_10178642 3300026088 Bacteria 1943
99 Ga0207648_10046291 3300026089 Bacteria 3814
100 Ga0207648_10062165 3300026089 Bacteria 3256
101 Ga0207676_10038967 3300026095 Unclassified 3632
102 Ga0207676_10259374 3300026095 Bacteria 1568
103 Ga0207675_100094444 3300026118 Bacteria 2813
104 Ga0207683_10224807 3300026121 Bacteria 1711
105 Ga0268266_10037692 3300028379 Bacteria 4117
106 Ga0268264_10050959 3300028381 Bacteria 3448
107 Ga0307408_100055308 3300031548 Bacteria 2873
108 Ga0307406_10034953 3300031901 Bacteria 3087
109 Ga0307412_10063559 3300031911 Unclassified 2491
110 Ga0307412_10103320 3300031911 Bacteria 2020
111 Ga0307409_100101349 3300031995 Bacteria 2389
112 Ga0307411_10132220 3300032005 Unclassified 1826
113 Ga0307415_100051656 3300032126 Unclassified 2791
114 Ga0307415_100059052 3300032126 Bacteria 2643
115 Ga0373951_0009253 3300035091 Bacteria 2219
116 Ga0373937_0052435 3300036401 Bacteria 3740
117 Ga0439446_0024502 3300042156 Bacteria 1722
118 Ga0439460_0003162 3300042461 Bacteria 3977
119 Ga0451576_0058314 3300045051 Bacteria 4035
120 Ga0495603_0007213 3300046455 Bacteria 6673
121 Ga0495638_0007521 3300046460 Bacteria 7798
122 Ga0495594_0038097 3300046499 Bacteria 2624
123 Ga0495643_0003244 3300046522 Bacteria 12053
124 Ga0495634_0058542 3300046642 Bacteria 2568
125 Ga0496106_0014821 3300048909 Bacteria 5764
126 Ga0501296_000848 3300049519 Unclassified 3003
127 Ga0501298_003989 3300049521 Bacteria 2305
128 Ga0501300_005920 3300049523 Bacteria 1799
129 Ga0501038_0004785 3300049574 Bacteria 12578
130 Ga0501039_0003610 3300049575 Bacteria 11603
131 Ga0501039_0134720 3300049575 Bacteria 1939
132 Ga0501042_0009244 3300049578 Bacteria 6558
133 Ga0501071_0125586 3300049587 Unclassified 1904
134 Ga0501076_0032500 3300049592 Bacteria 4073
135 Ga0501076_0117998 3300049592 Unclassified 2148
136 Ga0501077_0008448 3300049593 Bacteria 6381
137 Ga0501216_008199 3300049660 Bacteria 1639
138 Ga0501217_007984 3300049661 Bacteria 2280
139 Ga0501235_012322 3300049669 Bacteria 1880
140 Ga0501225_0001508 3300049705 Bacteria 7305
141 Ga0501283_002914 3300049779 Bacteria 2242
142 Ga0501045_0175616 3300049824 Bacteria 1596
143 nmdc:mga09592_53861_c1 3300050508 Unclassified 3398
144 nmdc:mga06r32_306730_c1 3300050510 Bacteria 1573
145 nmdc:mga06r32_79559_c1 3300050510 Bacteria 3188
146 nmdc:mga0rr50_20343_c1 3300050513 Bacteria 4505
147 nmdc:mga0rr50_86451_c1 3300050513 Unclassified 2432
148 nmdc:mga0a205_41892_c1 3300050515 Bacteria 4411

MSA Aligner

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Family Sequences

Sample Scaffold Protein Protein Length
1 3300049578 Ga0501042_0009244 Ga0501042_0009244_77_1312 365
2 3300005444 Ga0070694_100009506 Ga0070694_1000095065 373
3 3300003316 rootH1_10000039 rootH1_1000003911 377
4 3300003322 rootL2_10130208 rootL2_101302082 377
5 3300005367 Ga0070667_100059149 Ga0070667_1000591493 379
6 3300014326 Ga0157380_10030878 Ga0157380_100308782 383
7 3300031911 Ga0307412_10103320 Ga0307412_101033202 384
8 3300003322 rootL2_10254657 rootL2_102546571 385
9 3300031901 Ga0307406_10034953 Ga0307406_100349533 386
10 3300010375 Ga0105239_10117377 Ga0105239_101173772 387
11 3300049587 Ga0501071_0125586 Ga0501071_0125586_23_1297 387
12 3300049592 Ga0501076_0117998 Ga0501076_0117998_376_1650 387
13 3300005841 Ga0068863_100264318 Ga0068863_1002643181 388
14 3300014968 Ga0157379_10200419 Ga0157379_102004192 388
15 3300026088 Ga0207641_10178642 Ga0207641_101786422 388
16 3300048909 Ga0496106_0014821 Ga0496106_0014821_395_1648 388
17 3300006914 Ga0075436_100064987 Ga0075436_1000649872 389
18 3300007076 Ga0075435_100010355 Ga0075435_1000103553 389
19 3300031911 Ga0307412_10063559 Ga0307412_100635592 389
20 3300032005 Ga0307411_10132220 Ga0307411_101322202 389
21 3300032126 Ga0307415_100051656 Ga0307415_1000516562 389
22 3300049575 Ga0501039_0134720 Ga0501039_0134720_507_1799 389
23 3300050513 nmdc:mga0rr50_20343_c1 nmdc:mga0rr50_20343_c1_2052_3341 389
24 3300005440 Ga0070705_100000804 Ga0070705_1000008047 392
25 3300005539 Ga0068853_100018495 Ga0068853_1000184953 392
26 3300005547 Ga0070693_100003840 Ga0070693_1000038405 392
27 3300005615 Ga0070702_100003280 Ga0070702_1000032802 392
28 3300005843 Ga0068860_100038781 Ga0068860_1000387814 392
29 3300006237 Ga0097621_100005248 Ga0097621_1000052487 392
30 3300009176 Ga0105242_10020373 Ga0105242_100203733 392
31 3300009551 Ga0105238_10037444 Ga0105238_100374442 392
32 3300025904 Ga0207647_10003766 Ga0207647_100037667 392
33 3300025934 Ga0207686_10038255 Ga0207686_100382553 392
34 3300026041 Ga0207639_10024882 Ga0207639_100248822 392
35 3300028381 Ga0268264_10050959 Ga0268264_100509593 392
36 3300035091 Ga0373951_0009253 Ga0373951_0009253_837_2042 392
37 3300050510 nmdc:mga06r32_79559_c1 nmdc:mga06r32_79559_c1_1811_3121 393
38 3300049574 Ga0501038_0004785 Ga0501038_0004785_3527_4795 394
39 3300049575 Ga0501039_0003610 Ga0501039_0003610_6989_8311 394
40 3300049593 Ga0501077_0008448 Ga0501077_0008448_4348_5670 394
41 3300005345 Ga0070692_10044551 Ga0070692_100445512 395
42 3300005840 Ga0068870_10002974 Ga0068870_100029741 395
43 3300009174 Ga0105241_10139565 Ga0105241_101395652 395
44 3300011119 Ga0105246_10166843 Ga0105246_101668432 395
45 3300013100 Ga0157373_10087418 Ga0157373_100874183 395
46 3300013306 Ga0163162_10047676 Ga0163162_100476761 395
47 3300025908 Ga0207643_10024294 Ga0207643_100242942 395
48 3300025923 Ga0207681_10100100 Ga0207681_101001002 395
49 3300005937 Ga0081455_10056287 Ga0081455_100562872 396
50 3300042156 Ga0439446_0024502 Ga0439446_0024502_255_1514 396
51 3300049519 Ga0501296_000848 Ga0501296_000848_703_1968 396
52 3300049521 Ga0501298_003989 Ga0501298_003989_975_2240 396
53 3300049523 Ga0501300_005920 Ga0501300_005920_116_1381 396
54 3300049660 Ga0501216_008199 Ga0501216_008199_150_1415 396
55 3300049669 Ga0501235_012322 Ga0501235_012322_71_1336 396
56 3300049705 Ga0501225_0001508 Ga0501225_0001508_3419_4684 396
57 3300049779 Ga0501283_002914 Ga0501283_002914_849_2114 396
58 3300005290 Ga0065712_10003098 Ga0065712_100030984 397
59 3300005293 Ga0065715_10022829 Ga0065715_100228292 397
60 3300005331 Ga0070670_100082572 Ga0070670_1000825723 397
61 3300005333 Ga0070677_10049057 Ga0070677_100490571 397
62 3300005335 Ga0070666_10076335 Ga0070666_100763351 397
63 3300005354 Ga0070675_100026455 Ga0070675_1000264554 397
64 3300005441 Ga0070700_100091959 Ga0070700_1000919592 397
65 3300005459 Ga0068867_100277697 Ga0068867_1002776971 397
66 3300005543 Ga0070672_100079204 Ga0070672_1000792042 397
67 3300005618 Ga0068864_100031717 Ga0068864_1000317174 397
68 3300005840 Ga0068870_10016315 Ga0068870_100163151 397
69 3300009098 Ga0105245_10025991 Ga0105245_100259913 397
70 3300009553 Ga0105249_10189508 Ga0105249_101895082 397
71 3300013308 Ga0157375_10367761 Ga0157375_103677612 397
72 3300025893 Ga0207682_10012913 Ga0207682_100129133 397
73 3300025907 Ga0207645_10039320 Ga0207645_100393203 397
74 3300025908 Ga0207643_10014583 Ga0207643_100145832 397
75 3300025925 Ga0207650_10006031 Ga0207650_100060314 397
76 3300025926 Ga0207659_10007290 Ga0207659_100072903 397
77 3300025927 Ga0207687_10031378 Ga0207687_100313782 397
78 3300025933 Ga0207706_10038020 Ga0207706_100380203 397
79 3300025940 Ga0207691_10010594 Ga0207691_100105944 397
80 3300026089 Ga0207648_10046291 Ga0207648_100462914 397
81 3300026118 Ga0207675_100094444 Ga0207675_1000944442 397
82 3300049661 Ga0501217_007984 Ga0501217_007984_832_2097 397
83 3300009094 Ga0111539_10254901 Ga0111539_102549012 398
84 3300025908 Ga0207643_10017527 Ga0207643_100175275 398
85 3300025926 Ga0207659_10098763 Ga0207659_100987632 398
86 3300026089 Ga0207648_10062165 Ga0207648_100621653 398
87 3300005618 Ga0068864_100270303 Ga0068864_1002703031 399
88 3300026095 Ga0207676_10259374 Ga0207676_102593741 399
89 3300036401 Ga0373937_0052435 Ga0373937_0052435_938_2212 399
90 iso_pu_bacteria 2738541274 2738702997 401
91 iso_pu_bacteria 2738543028 2739333824 401
92 3300046460 Ga0495638_0007521 Ga0495638_0007521_3110_4387 402
93 3300046522 Ga0495643_0003244 Ga0495643_0003244_8684_9958 402
94 3300005295 Ga0065707_10085878 Ga0065707_100858781 403
95 3300005333 Ga0070677_10070087 Ga0070677_100700871 403
96 3300005456 Ga0070678_100021864 Ga0070678_1000218641 403
97 3300005543 Ga0070672_100039834 Ga0070672_1000398342 403
98 3300006852 Ga0075433_10034513 Ga0075433_100345133 403
99 3300009551 Ga0105238_10058854 Ga0105238_100588542 403
100 3300026121 Ga0207683_10224807 Ga0207683_102248071 403
101 3300031548 Ga0307408_100055308 Ga0307408_1000553082 403
102 3300031995 Ga0307409_100101349 Ga0307409_1001013491 403
103 3300032126 Ga0307415_100059052 Ga0307415_1000590522 403
104 3300050513 nmdc:mga0rr50_86451_c1 nmdc:mga0rr50_86451_c1_1042_2313 403
105 3300050515 nmdc:mga0a205_41892_c1 nmdc:mga0a205_41892_c1_2929_4200 403
106 3300006846 Ga0075430_100228145 Ga0075430_1002281451 404
107 3300025936 Ga0207670_10122586 Ga0207670_101225862 404
108 3300045051 Ga0451576_0058314 Ga0451576_0058314_1635_2939 404
109 3300050508 nmdc:mga09592_53861_c1 nmdc:mga09592_53861_c1_1975_3261 404
110 3300005444 Ga0070694_100015758 Ga0070694_1000157582 405
111 3300005549 Ga0070704_100069295 Ga0070704_1000692952 405
112 3300005618 Ga0068864_100236312 Ga0068864_1002363122 405
113 3300025937 Ga0207669_10158127 Ga0207669_101581271 405
114 3300026095 Ga0207676_10038967 Ga0207676_100389672 405
115 3300005434 Ga0070709_10000009 Ga0070709_1000000992 406
116 3300005841 Ga0068863_100109274 Ga0068863_1001092742 406
117 3300025906 Ga0207699_10000020 Ga0207699_1000002047 406
118 3300050510 nmdc:mga06r32_306730_c1 nmdc:mga06r32_306730_c1_249_1544 407
119 iso_pu_bacteria 2824679649 2824683055 408
120 iso_pu_bacteria 2824732956 2824735789 408
121 iso_pu_bacteria 2908775508 2908781009 408
122 iso_pu_bacteria 2922393267 2922397230 408
123 3300042461 Ga0439460_0003162 Ga0439460_0003162_2416_3726 409
124 iso_pu_bacteria 2857509624 2857512915 409
125 3300006175 Ga0070712_100180560 Ga0070712_1001805601 410
126 3300005331 Ga0070670_100129002 Ga0070670_1001290022 411
127 3300005334 Ga0068869_100128047 Ga0068869_1001280472 411
128 3300005354 Ga0070675_100012017 Ga0070675_1000120172 411
129 3300005367 Ga0070667_100235214 Ga0070667_1002352142 411
130 3300005544 Ga0070686_100014619 Ga0070686_1000146192 411
131 3300005840 Ga0068870_10106979 Ga0068870_101069792 411
132 3300009177 Ga0105248_10078523 Ga0105248_100785232 411
133 3300013308 Ga0157375_10134643 Ga0157375_101346432 411
134 3300025908 Ga0207643_10053329 Ga0207643_100533292 411
135 3300025918 Ga0207662_10008163 Ga0207662_100081633 411
136 3300025935 Ga0207709_10134085 Ga0207709_101340851 411
137 3300025945 Ga0207679_10149750 Ga0207679_101497501 411
138 3300025960 Ga0207651_10043216 Ga0207651_100432162 411
139 3300005937 Ga0081455_10038325 Ga0081455_100383253 412
140 3300006178 Ga0075367_10108734 Ga0075367_101087341 412
141 3300005548 Ga0070665_100027597 Ga0070665_1000275973 413
142 3300028379 Ga0268266_10037692 Ga0268266_100376923 413
143 iso_pu_bacteria 2617270741 2617372561 413
144 iso_pu_bacteria 2824746037 2824747010 413
145 3300046455 Ga0495603_0007213 Ga0495603_0007213_3429_4760 416
146 3300046499 Ga0495594_0038097 Ga0495594_0038097_695_2026 416
147 3300046642 Ga0495634_0058542 Ga0495634_0058542_195_1526 416
148 3300021320 Ga0214544_1000004 Ga0214544_1000004381 417
149 3300021321 Ga0214542_1000442 Ga0214542_100044230 417
150 3300021324 Ga0214545_1000001 Ga0214545_100000139 417
151 3300021327 Ga0214543_1000006 Ga0214543_100000636 417
152 3300005436 Ga0070713_100042660 Ga0070713_1000426602 418
153 3300049824 Ga0501045_0175616 Ga0501045_0175616_157_1473 421
154 3300049592 Ga0501076_0032500 Ga0501076_0032500_918_2255 423
155 iso_pu_bacteria 2874604998 2874606717 423
156 3300003215 JGI25153J46596_10006748 JGI25153J46596_100067483 431
157 3300025297 Ga0209758_1006581 Ga0209758_10065812 431

Functional Annotation

PFAM ID Name Description Start Position End Position Accuracy

PF00753

Lactamase_B

Metallo-beta-lactamase superfamily

40

176

0.88

Structural Annotation

Top 5 Hits

ID Description Score Start End
2bib-assembly1.cif.gz_A crystal structure of the complete modular teichioic acid phosphorylcholine esterase pce (cbpe) from streptococcus pneumoniae 0.6581 4 364
1zkp-assembly1.cif.gz_C 1.5a resolution crystal structure of a metallo beta lactamase family protein, the elac homolgue of bacillus anthracis, a putative ribonuclease 0.6251 4 368
5ve4-assembly1.cif.gz_A crystal structure of persulfide dioxygenase-rhodanese fusion protein with rhodanese domain inactivating mutation (c314s) from burkholderia phytofirmans 0.6193 1 113
1vjn-assembly1.cif.gz_A crystal structure of a putative zn-dependent hydrolase of the metallo-beta-lactamase superfamily (tm0207) from thermotoga maritima at 2.00 a resolution 0.6136 5 334
3x2y-assembly1.cif.gz_C crystal structure of metallo-beta-lactamase h8a from thermotoga maritima 0.6121 4 364
ID Description Score Start End Superfamily
af_Q2FXY4_446_708_3.60.15.10 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.7438 3 366 3.60.15.10
af_P37443_498_733_3.60.15.10 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.7358 4 366 3.60.15.10
af_D3Z8F1_383_500_3.40.20.10 Alpha Beta;3-Layer(aba) Sandwich;Severin;Severin 0.6944 4 56 3.40.20.10
af_Q2FXY4_446_708_3.60.15.10 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.6811 3 366 3.60.15.10
af_P37443_498_733_3.60.15.10 Alpha Beta;4-Layer Sandwich;Metallo-beta-lactamase; Chain A;Ribonuclease Z/Hydroxyacylglutathione hydrolase-like 0.6737 4 366 3.60.15.10
ID Description Score Start End GO Terms
AF-A0A533SFL5-F1-model_v4 MBL fold metallo-hydrolase 0.936 2 87 GO:0016787
AF-A0A5A9EL62-F1-model_v4 MBL fold metallo-hydrolase 0.8965 3 431
AF-A0A418VDZ4-F1-model_v4 Metallo-beta-lactamase domain-containing protein 0.8945 3 431
AF-A0A5A9EL62-F1-model_v4 MBL fold metallo-hydrolase 0.8923 3 431
AF-A0A418VDZ4-F1-model_v4 Metallo-beta-lactamase domain-containing protein 0.8904 3 431

Feature Viewer

pLDDT pTM Quality
82.5 0.84 High
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Predicted Structure (AlphaFold2)

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